RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 GRB14Q14449 540 aa15.77■□□□□ 0.12
CLK3-213ENST00000563842 MTFR1Q15390 333 aa15.77■□□□□ 0.12
CLK3-213ENST00000563842 RCSD1Q6JBY9 416 aa15.77■□□□□ 0.12
CLK3-213ENST00000563842 RIOX2Q8IUF8 465 aa15.77■□□□□ 0.12
CLK3-213ENST00000563842 ABRAQ8N0Z2 381 aa15.77■□□□□ 0.12
CLK3-213ENST00000563842 DCAF4Q8WV16 495 aa15.77■□□□□ 0.12
CLK3-213ENST00000563842 KIFC2Q96AC6 838 aa15.77■□□□□ 0.12
CLK3-213ENST00000563842 TMEM232C9JQI7 657 aa15.76■□□□□ 0.11
CLK3-213ENST00000563842 HOXC6P09630 235 aa15.76■□□□□ 0.11
CLK3-213ENST00000563842 FCER1AP12319 257 aa15.76■□□□□ 0.11
CLK3-213ENST00000563842 CASC1Q6TDU7 716 aa15.76■□□□□ 0.11
CLK3-213ENST00000563842 DPP9Q86TI2 863 aa15.76■□□□□ 0.11
CLK3-213ENST00000563842 DGKHQ86XP1 1220 aa15.76■□□□□ 0.11
CLK3-213ENST00000563842 TEX13BQ9BXU2 312 aa15.76■□□□□ 0.11
CLK3-213ENST00000563842 IL25Q9H293 177 aa15.76■□□□□ 0.11
CLK3-213ENST00000563842 ZNF214Q9UL59 606 aaPredicted RBP15.76■□□□□ 0.11
CLK3-213ENST00000563842 NEDD4P46934 1319 aa15.75■□□□□ 0.11
CLK3-213ENST00000563842 RPTORQ8N122 1335 aa15.75■□□□□ 0.11
CLK3-213ENST00000563842 ATP2A1O14983 1001 aa15.75■□□□□ 0.11
CLK3-213ENST00000563842 KDM4AO75164 1064 aa15.75■□□□□ 0.11
CLK3-213ENST00000563842 EN2P19622 333 aaPredicted RBP15.75■□□□□ 0.11
CLK3-213ENST00000563842 GJA8P48165 433 aa15.75■□□□□ 0.11
CLK3-213ENST00000563842 OAZ1P54368 228 aa15.75■□□□□ 0.11
CLK3-213ENST00000563842 MFSD14CQ5VZR4 134 aa15.75■□□□□ 0.11
CLK3-213ENST00000563842 REPS2Q8NFH8 660 aa15.75■□□□□ 0.11
CLK3-213ENST00000563842 TRIB2Q92519 343 aa15.75■□□□□ 0.11
CLK3-213ENST00000563842 TMEM47Q9BQJ4 181 aa15.75■□□□□ 0.11
CLK3-213ENST00000563842 UNC93B1Q9H1C4 597 aa15.75■□□□□ 0.11
CLK3-213ENST00000563842 SLC38A10Q9HBR0 1119 aa15.75■□□□□ 0.11
CLK3-213ENST00000563842 HMX1Q9NP08 348 aaPredicted RBP15.75■□□□□ 0.11
CLK3-213ENST00000563842 MYH6P13533 1939 aa15.74■□□□□ 0.11
CLK3-213ENST00000563842 B4E1Z4 1266 aa15.74■□□□□ 0.11
CLK3-213ENST00000563842 ADORA2AP29274 412 aa15.74■□□□□ 0.11
CLK3-213ENST00000563842 PTH1RQ03431 593 aa15.74■□□□□ 0.11
CLK3-213ENST00000563842 KCTD2Q14681 263 aa15.74■□□□□ 0.11
CLK3-213ENST00000563842 CCDC96Q2M329 555 aa15.74■□□□□ 0.11
CLK3-213ENST00000563842 SNRNP48Q6IEG0 339 aaKnown RBP15.74■□□□□ 0.11
CLK3-213ENST00000563842 MAP4K1Q92918 833 aa15.74■□□□□ 0.11
CLK3-213ENST00000563842 SGPL1O95470 568 aa15.73■□□□□ 0.11
CLK3-213ENST00000563842 KCTD1Q719H9 257 aa15.73■□□□□ 0.11
CLK3-213ENST00000563842 CPXCR1Q8N123 301 aa15.73■□□□□ 0.11
CLK3-213ENST00000563842 ZSCAN10Q96SZ4 725 aaPredicted RBP15.73■□□□□ 0.11
CLK3-213ENST00000563842 MMP19Q99542 508 aa15.73■□□□□ 0.11
CLK3-213ENST00000563842 ESYT1Q9BSJ8 1104 aa15.73■□□□□ 0.11
CLK3-213ENST00000563842 UBAC1Q9BSL1 405 aa15.73■□□□□ 0.11
CLK3-213ENST00000563842 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.73■□□□□ 0.112e-7■■■■□ 23.4
CLK3-213ENST00000563842 PAK6Q9NQU5 681 aaPredicted RBP15.73■□□□□ 0.11
CLK3-213ENST00000563842 ZSWIM5Q9P217 1185 aa15.73■□□□□ 0.11
CLK3-213ENST00000563842 FBXO40Q9UH90 709 aa15.73■□□□□ 0.11
CLK3-213ENST00000563842 MTMR7Q9Y216 660 aa15.73■□□□□ 0.11
CLK3-213ENST00000563842 CYP21A2P08686 494 aa15.72■□□□□ 0.11
CLK3-213ENST00000563842 MAP3K21Q5TCX8 1036 aa15.72■□□□□ 0.11
CLK3-213ENST00000563842 OLFML2BQ68BL8 750 aa15.72■□□□□ 0.11
CLK3-213ENST00000563842 RALYLQ86SE5 291 aaKnown RBP15.72■□□□□ 0.11
CLK3-213ENST00000563842 CHST13Q8NET6 341 aa15.72■□□□□ 0.11
CLK3-213ENST00000563842 U2AF1L4Q8WU68 220 aaKnown RBP15.72■□□□□ 0.11
CLK3-213ENST00000563842 ANKS1AQ92625 1134 aa15.72■□□□□ 0.11
CLK3-213ENST00000563842 ZKSCAN3Q9BRR0 538 aa15.72■□□□□ 0.11
CLK3-213ENST00000563842 KAT14Q9H8E8 782 aa15.72■□□□□ 0.11
CLK3-213ENST00000563842 PPP4R2Q9NY27 417 aa15.72■□□□□ 0.11
CLK3-213ENST00000563842 PNMA2Q9UL42 364 aa15.72■□□□□ 0.11
CLK3-213ENST00000563842 TFRCP02786 760 aaKnown RBP15.71■□□□□ 0.11
CLK3-213ENST00000563842 PDHBP11177 359 aa15.71■□□□□ 0.11
CLK3-213ENST00000563842 PRKAR2AP13861 404 aaKnown RBP15.71■□□□□ 0.11
CLK3-213ENST00000563842 SLC4A3P48751 1232 aa15.71■□□□□ 0.11
CLK3-213ENST00000563842 CACNB2Q08289 660 aaPredicted RBP15.71■□□□□ 0.11
CLK3-213ENST00000563842 CCL14Q16627 93 aa15.71■□□□□ 0.11
CLK3-213ENST00000563842 TKFCQ3LXA3 575 aa15.71■□□□□ 0.11
CLK3-213ENST00000563842 GPATCH4Q5T3I0 446 aaKnown RBP15.71■□□□□ 0.11
CLK3-213ENST00000563842 BTNL9Q6UXG8 535 aa15.71■□□□□ 0.11
CLK3-213ENST00000563842 NCOA7Q8NI08 942 aa15.71■□□□□ 0.11
CLK3-213ENST00000563842 NPLOC4Q8TAT6 608 aa15.71■□□□□ 0.11
CLK3-213ENST00000563842 DDX11Q96FC9 970 aa15.71■□□□□ 0.11
CLK3-213ENST00000563842 DEFB118Q96PH6 123 aa15.71■□□□□ 0.11
CLK3-213ENST00000563842 RAVER2Q9HCJ3 691 aaKnown RBP15.71■□□□□ 0.11
CLK3-213ENST00000563842 PRR12Q9ULL5 1215 aa15.71■□□□□ 0.11
CLK3-213ENST00000563842 DIS3Q9Y2L1 958 aaKnown RBP15.71■□□□□ 0.11
CLK3-213ENST00000563842 RBM8AQ9Y5S9 174 aaKnown RBP15.71■□□□□ 0.11
CLK3-213ENST00000563842 SMCHD1A6NHR9 2005 aa15.71■□□□□ 0.11
CLK3-213ENST00000563842 TNKSO95271 1327 aa15.7■□□□□ 0.1
CLK3-213ENST00000563842 ERICH2A1L162 156 aa15.7■□□□□ 0.1
CLK3-213ENST00000563842 CDC45O75419 566 aa15.7■□□□□ 0.1
CLK3-213ENST00000563842 SNHG28P0DPA3 235 aa15.7■□□□□ 0.1
CLK3-213ENST00000563842 SART3Q15020 963 aaKnown RBP15.7■□□□□ 0.1
CLK3-213ENST00000563842 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.7■□□□□ 0.1
CLK3-213ENST00000563842 PNMA1Q8ND90 353 aa15.7■□□□□ 0.1
CLK3-213ENST00000563842 CHMP4CQ96CF2 233 aa15.7■□□□□ 0.1
CLK3-213ENST00000563842 FRMPD3Q5JV73 1810 aa15.69■□□□□ 0.1
CLK3-213ENST00000563842 E7EWF7 191 aa15.69■□□□□ 0.1
CLK3-213ENST00000563842 MSCO60682 206 aa15.69■□□□□ 0.1
CLK3-213ENST00000563842 COBLO75128 1261 aa15.69■□□□□ 0.1
CLK3-213ENST00000563842 ZNF543Q08ER8 600 aa15.69■□□□□ 0.1
CLK3-213ENST00000563842 TRIM32Q13049 653 aa15.69■□□□□ 0.1
CLK3-213ENST00000563842 IFIT1BQ5T764 474 aaKnown RBP15.69■□□□□ 0.1
CLK3-213ENST00000563842 SYDE2Q5VT97 1194 aa15.69■□□□□ 0.1
CLK3-213ENST00000563842 SKAP1Q86WV1 359 aa15.69■□□□□ 0.1
CLK3-213ENST00000563842 ENAHQ8N8S7 591 aaPredicted RBP15.69■□□□□ 0.1
CLK3-213ENST00000563842 ANKLE1Q8NAG6 615 aa15.69■□□□□ 0.1
CLK3-213ENST00000563842 LSG1Q9H089 658 aaKnown RBP15.69■□□□□ 0.1
CLK3-213ENST00000563842 CRISPLD2Q9H0B8 497 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms