RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 SNRNP48Q6IEG0 339 aaKnown RBP20.47■□□□□ 0.87
VPS9D1-203ENST00000563798 SLC38A10Q9HBR0 1119 aa20.47■□□□□ 0.87
VPS9D1-203ENST00000563798 HELLSQ9NRZ9 838 aa20.47■□□□□ 0.87
VPS9D1-203ENST00000563798 RIPK3Q9Y572 518 aa20.47■□□□□ 0.87
VPS9D1-203ENST00000563798 MYH4Q9Y623 1939 aa20.47■□□□□ 0.87
VPS9D1-203ENST00000563798 DNAJC25-GNG10A0A024R161 153 aa20.46■□□□□ 0.87
VPS9D1-203ENST00000563798 ZBED4O75132 1171 aa20.46■□□□□ 0.87
VPS9D1-203ENST00000563798 FGRP09769 529 aa20.46■□□□□ 0.87
VPS9D1-203ENST00000563798 SOX1O00570 391 aaPredicted RBP20.45■□□□□ 0.86
VPS9D1-203ENST00000563798 PLA2G6O60733 806 aa20.45■□□□□ 0.86
VPS9D1-203ENST00000563798 BMP3P12645 472 aa20.45■□□□□ 0.86
VPS9D1-203ENST00000563798 NOVP48745 357 aa20.45■□□□□ 0.86
VPS9D1-203ENST00000563798 SNX17Q15036 470 aa20.45■□□□□ 0.86
VPS9D1-203ENST00000563798 LRIT3Q3SXY7 679 aa20.45■□□□□ 0.86
VPS9D1-203ENST00000563798 FAM47AQ5JRC9 791 aa20.45■□□□□ 0.86
VPS9D1-203ENST00000563798 GJC2Q5T442 439 aaPredicted RBP20.45■□□□□ 0.86
VPS9D1-203ENST00000563798 SLFN13Q68D06 897 aa20.45■□□□□ 0.86
VPS9D1-203ENST00000563798 GPR153Q6NV75 609 aa20.45■□□□□ 0.86
VPS9D1-203ENST00000563798 MAMDC4Q6UXC1 1216 aa20.45■□□□□ 0.86
VPS9D1-203ENST00000563798 CCDC129Q6ZRS4 1044 aa20.45■□□□□ 0.86
VPS9D1-203ENST00000563798 ZNF467Q7Z7K2 595 aaPredicted RBP20.45■□□□□ 0.86
VPS9D1-203ENST00000563798 SMC5Q8IY18 1101 aa20.45■□□□□ 0.86
VPS9D1-203ENST00000563798 LRRC47Q8N1G4 583 aaKnown RBP20.45■□□□□ 0.86
VPS9D1-203ENST00000563798 GMCL1Q96IK5 515 aa20.45■□□□□ 0.86
VPS9D1-203ENST00000563798 KBTBD13C9JR72 458 aa20.44■□□□□ 0.86
VPS9D1-203ENST00000563798 ZNF865P0CJ78 1059 aaPredicted RBP20.44■□□□□ 0.86
VPS9D1-203ENST00000563798 LRRC41Q15345 812 aa20.44■□□□□ 0.86
VPS9D1-203ENST00000563798 C1orf53Q5VUE5 145 aa20.44■□□□□ 0.86
VPS9D1-203ENST00000563798 TDHQ8IZJ6 230 aa20.44■□□□□ 0.86
VPS9D1-203ENST00000563798 FBXO40Q9UH90 709 aa20.44■□□□□ 0.86
VPS9D1-203ENST00000563798 SYNGAP1Q96PV0 1343 aa20.44■□□□□ 0.86
VPS9D1-203ENST00000563798 LAMA3Q16787 3333 aa20.43■□□□□ 0.86
VPS9D1-203ENST00000563798 PLXNA1Q9UIW2 1896 aa20.43■□□□□ 0.86
VPS9D1-203ENST00000563798 ORC4O43929 436 aa20.43■□□□□ 0.86
VPS9D1-203ENST00000563798 VPS53Q5VIR6 699 aa20.43■□□□□ 0.86
VPS9D1-203ENST00000563798 ANO1Q5XXA6 986 aa20.43■□□□□ 0.86
VPS9D1-203ENST00000563798 SLC39A5Q6ZMH5 540 aa20.43■□□□□ 0.86
VPS9D1-203ENST00000563798 CHST13Q8NET6 341 aa20.43■□□□□ 0.86
VPS9D1-203ENST00000563798 KIFC2Q96AC6 838 aa20.43■□□□□ 0.86
VPS9D1-203ENST00000563798 IL17RBQ9NRM6 502 aa20.43■□□□□ 0.86
VPS9D1-203ENST00000563798 DNAH12Q6ZR08 3092 aa20.43■□□□□ 0.86
VPS9D1-203ENST00000563798 RARBP10826 455 aa20.42■□□□□ 0.86
VPS9D1-203ENST00000563798 TAL1P17542 331 aaPredicted RBP20.42■□□□□ 0.86
VPS9D1-203ENST00000563798 ATN1P54259 1190 aaPredicted RBP20.42■□□□□ 0.86
VPS9D1-203ENST00000563798 RTP1P59025 263 aa20.42■□□□□ 0.86
VPS9D1-203ENST00000563798 CTDSPL2Q05D32 466 aa20.42■□□□□ 0.86
VPS9D1-203ENST00000563798 MCMDC2Q4G0Z9 681 aa20.42■□□□□ 0.86
VPS9D1-203ENST00000563798 FAM160B2Q86V87 743 aa20.42■□□□□ 0.86
VPS9D1-203ENST00000563798 CPXCR1Q8N123 301 aa20.42■□□□□ 0.86
VPS9D1-203ENST00000563798 CHURC1Q8WUH1 139 aa20.42■□□□□ 0.86
VPS9D1-203ENST00000563798 STAG1Q8WVM7 1258 aa20.42■□□□□ 0.86
VPS9D1-203ENST00000563798 DDX11Q96FC9 970 aa20.42■□□□□ 0.86
VPS9D1-203ENST00000563798 UBE2OQ9C0C9 1292 aaKnown RBP20.42■□□□□ 0.86
VPS9D1-203ENST00000563798 RAVER2Q9HCJ3 691 aaKnown RBP20.42■□□□□ 0.86
VPS9D1-203ENST00000563798 PHF24Q9UPV7 400 aa20.42■□□□□ 0.86
VPS9D1-203ENST00000563798 TACC3Q9Y6A5 838 aa20.42■□□□□ 0.86
VPS9D1-203ENST00000563798 ZMYM6O95789 1325 aa20.42■□□□□ 0.86
VPS9D1-203ENST00000563798 TSPY2A6NKD2 308 aa20.41■□□□□ 0.86
VPS9D1-203ENST00000563798 SNAI1O95863 264 aaPredicted RBP20.41■□□□□ 0.86
VPS9D1-203ENST00000563798 AKR1A1P14550 325 aa20.41■□□□□ 0.86
VPS9D1-203ENST00000563798 RWDD1Q9H446 243 aaPredicted RBP20.41■□□□□ 0.86
VPS9D1-203ENST00000563798 XPNPEP3Q9NQH7 507 aa20.41■□□□□ 0.86
VPS9D1-203ENST00000563798 CNPY2Q9Y2B0 182 aa20.41■□□□□ 0.86
VPS9D1-203ENST00000563798 CTDP1Q9Y5B0 961 aaPredicted RBP20.41■□□□□ 0.86
VPS9D1-203ENST00000563798 A0A0D9SFI3 127 aa20.4■□□□□ 0.86
VPS9D1-203ENST00000563798 TMEM232C9JQI7 657 aa20.4■□□□□ 0.86
VPS9D1-203ENST00000563798 FGAP02671 866 aa20.4■□□□□ 0.86
VPS9D1-203ENST00000563798 ADCYAP1R1P41586 468 aa20.4■□□□□ 0.86
VPS9D1-203ENST00000563798 STAT2P52630 851 aa20.4■□□□□ 0.86
VPS9D1-203ENST00000563798 RCSD1Q6JBY9 416 aa20.4■□□□□ 0.86
VPS9D1-203ENST00000563798 LRCH3Q96II8 777 aa20.4■□□□□ 0.86
VPS9D1-203ENST00000563798 FAM227BQ96M60 508 aa20.4■□□□□ 0.86
VPS9D1-203ENST00000563798 OSBPL3Q9H4L5 887 aa20.4■□□□□ 0.86
VPS9D1-203ENST00000563798 INCENPQ9NQS7 918 aa20.4■□□□□ 0.86
VPS9D1-203ENST00000563798 ZNF536O15090 1300 aa20.39■□□□□ 0.85
VPS9D1-203ENST00000563798 SLC1A4P43007 532 aa20.39■□□□□ 0.85
VPS9D1-203ENST00000563798 RNF180Q86T96 592 aa20.39■□□□□ 0.85
VPS9D1-203ENST00000563798 FGD4Q96M96 766 aa20.39■□□□□ 0.85
VPS9D1-203ENST00000563798 LNPKQ9C0E8 428 aa20.39■□□□□ 0.85
VPS9D1-203ENST00000563798 TCP11L1Q9NUJ3 509 aa20.39■□□□□ 0.85
VPS9D1-203ENST00000563798 STX8Q9UNK0 236 aa20.39■□□□□ 0.85
VPS9D1-203ENST00000563798 SMCHD1A6NHR9 2005 aa20.39■□□□□ 0.85
VPS9D1-203ENST00000563798 ADAMTS4O75173 837 aa20.38■□□□□ 0.85
VPS9D1-203ENST00000563798 HSPD1P10809 573 aaKnown RBP20.38■□□□□ 0.85
VPS9D1-203ENST00000563798 MCCP23508 829 aa20.38■□□□□ 0.85
VPS9D1-203ENST00000563798 MDM2Q00987 491 aaPredicted RBP20.38■□□□□ 0.85
VPS9D1-203ENST00000563798 TKFCQ3LXA3 575 aa20.38■□□□□ 0.85
VPS9D1-203ENST00000563798 ANKRD35Q8N283 1001 aa20.38■□□□□ 0.85
VPS9D1-203ENST00000563798 TSEN34Q9BSV6 310 aaKnown RBP20.38■□□□□ 0.85
VPS9D1-203ENST00000563798 FAM184BQ9ULE4 1060 aa20.38■□□□□ 0.85
VPS9D1-203ENST00000563798 RANBP6O60518 1105 aaKnown RBP20.37■□□□□ 0.85
VPS9D1-203ENST00000563798 NMT2O60551 498 aa20.37■□□□□ 0.85
VPS9D1-203ENST00000563798 NUCB1Q02818 461 aa20.37■□□□□ 0.85
VPS9D1-203ENST00000563798 CHD1LQ86WJ1 897 aa20.37■□□□□ 0.85
VPS9D1-203ENST00000563798 LBHD1Q9BQE6 289 aaPredicted RBP20.37■□□□□ 0.85
VPS9D1-203ENST00000563798 ACAD9Q9H845 621 aa20.37■□□□□ 0.85
VPS9D1-203ENST00000563798 PRKAG2Q9UGJ0 569 aa20.37■□□□□ 0.85
VPS9D1-203ENST00000563798 ATP11BQ9Y2G3 1177 aa20.37■□□□□ 0.85
VPS9D1-203ENST00000563798 PGK1P00558 417 aa20.36■□□□□ 0.85
VPS9D1-203ENST00000563798 PCP11498 1178 aaKnown RBP20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms