RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 RARBP10826 455 aa18.75■□□□□ 0.59
CLK3-211ENST00000563297 MX1P20591 662 aa18.75■□□□□ 0.59
CLK3-211ENST00000563297 PDE4BQ07343 736 aa18.75■□□□□ 0.59
CLK3-211ENST00000563297 SNX17Q15036 470 aa18.75■□□□□ 0.59
CLK3-211ENST00000563297 CPXCR1Q8N123 301 aa18.75■□□□□ 0.59
CLK3-211ENST00000563297 DEFB123Q8N688 67 aa18.75■□□□□ 0.59
CLK3-211ENST00000563297 KIFC2Q96AC6 838 aa18.75■□□□□ 0.59
CLK3-211ENST00000563297 DDX11Q96FC9 970 aa18.75■□□□□ 0.59
CLK3-211ENST00000563297 XPNPEP3Q9NQH7 507 aa18.75■□□□□ 0.59
CLK3-211ENST00000563297 PRKAG2Q9UGJ0 569 aa18.75■□□□□ 0.59
CLK3-211ENST00000563297 FEM1BQ9UK73 627 aa18.75■□□□□ 0.59
CLK3-211ENST00000563297 SYNPO2Q9UMS6 1093 aa18.75■□□□□ 0.59
CLK3-211ENST00000563297 SALL3Q9BXA9 1300 aa18.74■□□□□ 0.59
CLK3-211ENST00000563297 DNAJC25-GNG10A0A024R161 153 aa18.74■□□□□ 0.59
CLK3-211ENST00000563297 PGK1P00558 417 aa18.74■□□□□ 0.59
CLK3-211ENST00000563297 SLC4A3P48751 1232 aa18.74■□□□□ 0.59
CLK3-211ENST00000563297 RRP1P56182 461 aaKnown RBP18.74■□□□□ 0.59
CLK3-211ENST00000563297 TFAP4Q01664 338 aa18.74■□□□□ 0.59
CLK3-211ENST00000563297 PPARAQ07869 468 aa18.74■□□□□ 0.59
CLK3-211ENST00000563297 C1orf53Q5VUE5 145 aa18.74■□□□□ 0.59
CLK3-211ENST00000563297 Q7L0L9 218 aa18.74■□□□□ 0.59
CLK3-211ENST00000563297 LRRC47Q8N1G4 583 aaKnown RBP18.74■□□□□ 0.59
CLK3-211ENST00000563297 GMCL1P1Q8NEA9 526 aa18.74■□□□□ 0.59
CLK3-211ENST00000563297 NAPBQ9H115 298 aa18.74■□□□□ 0.59
CLK3-211ENST00000563297 SLC38A10Q9HBR0 1119 aa18.74■□□□□ 0.59
CLK3-211ENST00000563297 RAVER2Q9HCJ3 691 aaKnown RBP18.74■□□□□ 0.59
CLK3-211ENST00000563297 FOXP2O15409 715 aa18.73■□□□□ 0.59
CLK3-211ENST00000563297 SNAI1O95863 264 aaPredicted RBP18.73■□□□□ 0.59
CLK3-211ENST00000563297 TSPY3P0CV98 308 aa18.73■□□□□ 0.59
CLK3-211ENST00000563297 TSPY8P0CW00 308 aa18.73■□□□□ 0.59
CLK3-211ENST00000563297 TRIM60Q495X7 471 aa18.73■□□□□ 0.59
CLK3-211ENST00000563297 ANKRD45Q5TZF3 282 aa18.73■□□□□ 0.59
CLK3-211ENST00000563297 SLFN13Q68D06 897 aa18.73■□□□□ 0.59
CLK3-211ENST00000563297 MSL3Q8N5Y2 521 aaKnown RBP18.73■□□□□ 0.59
CLK3-211ENST00000563297 PHF24Q9UPV7 400 aa18.73■□□□□ 0.59
CLK3-211ENST00000563297 CTDP1Q9Y5B0 961 aaPredicted RBP18.73■□□□□ 0.59
CLK3-211ENST00000563297 SLC3A2P08195 630 aaKnown RBP18.72■□□□□ 0.59
CLK3-211ENST00000563297 BMP3P12645 472 aa18.72■□□□□ 0.59
CLK3-211ENST00000563297 AKR1A1P14550 325 aa18.72■□□□□ 0.59
CLK3-211ENST00000563297 MAMDC4Q6UXC1 1216 aa18.72■□□□□ 0.59
CLK3-211ENST00000563297 CCDC129Q6ZRS4 1044 aa18.72■□□□□ 0.59
CLK3-211ENST00000563297 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.72■□□□□ 0.59
CLK3-211ENST00000563297 RNF180Q86T96 592 aa18.72■□□□□ 0.59
CLK3-211ENST00000563297 INCENPQ9NQS7 918 aa18.72■□□□□ 0.59
CLK3-211ENST00000563297 MTMR10Q9NXD2 777 aa18.72■□□□□ 0.59
CLK3-211ENST00000563297 CNPY2Q9Y2B0 182 aa18.72■□□□□ 0.59
CLK3-211ENST00000563297 PLIN4Q96Q06 1357 aa18.71■□□□□ 0.59
CLK3-211ENST00000563297 OAZ1P54368 228 aa18.71■□□□□ 0.59
CLK3-211ENST00000563297 TLE2Q04725 743 aa18.71■□□□□ 0.59
CLK3-211ENST00000563297 SH3RF1Q7Z6J0 888 aa18.71■□□□□ 0.59
CLK3-211ENST00000563297 LENG1Q96BZ8 264 aaPredicted RBP18.71■□□□□ 0.59
CLK3-211ENST00000563297 CRBNQ96SW2 442 aa18.71■□□□□ 0.59
CLK3-211ENST00000563297 PDLIM7Q9NR12 457 aa18.71■□□□□ 0.59
CLK3-211ENST00000563297 LAMA2P24043 3122 aaKnown RBP18.71■□□□□ 0.59
CLK3-211ENST00000563297 SYNGAP1Q96PV0 1343 aa18.71■□□□□ 0.59
CLK3-211ENST00000563297 MCM3APO60318 1980 aa18.7■□□□□ 0.58
CLK3-211ENST00000563297 TRIM43BA6NCK2 446 aa18.7■□□□□ 0.58
CLK3-211ENST00000563297 TMEM232C9JQI7 657 aa18.7■□□□□ 0.58
CLK3-211ENST00000563297 POTEB2H3BUK9 544 aa18.7■□□□□ 0.58
CLK3-211ENST00000563297 ADAMTS4O75173 837 aa18.7■□□□□ 0.58
CLK3-211ENST00000563297 FDX1P10109 184 aa18.7■□□□□ 0.58
CLK3-211ENST00000563297 CTDSPL2Q05D32 466 aa18.7■□□□□ 0.58
CLK3-211ENST00000563297 ZNF467Q7Z7K2 595 aaPredicted RBP18.7■□□□□ 0.58
CLK3-211ENST00000563297 ANKRD35Q8N283 1001 aa18.7■□□□□ 0.58
CLK3-211ENST00000563297 SLC17A8Q8NDX2 589 aa18.7■□□□□ 0.58
CLK3-211ENST00000563297 CHST13Q8NET6 341 aa18.7■□□□□ 0.58
CLK3-211ENST00000563297 TRIM43Q96BQ3 446 aaPredicted RBP18.7■□□□□ 0.58
CLK3-211ENST00000563297 PRDM5Q9NQX1 630 aaPredicted RBP18.7■□□□□ 0.58
CLK3-211ENST00000563297 FAM184BQ9ULE4 1060 aa18.7■□□□□ 0.58
CLK3-211ENST00000563297 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.7■□□□□ 0.58
CLK3-211ENST00000563297 TACC3Q9Y6A5 838 aa18.7■□□□□ 0.58
CLK3-211ENST00000563297 LTBP2Q14767 1821 aa18.7■□□□□ 0.58
CLK3-211ENST00000563297 MCCP23508 829 aa18.69■□□□□ 0.58
CLK3-211ENST00000563297 VPS53Q5VIR6 699 aa18.69■□□□□ 0.58
CLK3-211ENST00000563297 CHURC1Q8WUH1 139 aa18.69■□□□□ 0.58
CLK3-211ENST00000563297 BADQ92934 168 aa18.69■□□□□ 0.58
CLK3-211ENST00000563297 EVI5LQ96CN4 794 aa18.69■□□□□ 0.58
CLK3-211ENST00000563297 GMCL1Q96IK5 515 aa18.69■□□□□ 0.58
CLK3-211ENST00000563297 FGD4Q96M96 766 aa18.69■□□□□ 0.58
CLK3-211ENST00000563297 TSEN34Q9BSV6 310 aaKnown RBP18.69■□□□□ 0.58
CLK3-211ENST00000563297 IL17RBQ9NRM6 502 aa18.69■□□□□ 0.58
CLK3-211ENST00000563297 ZBTB47Q9UFB7 747 aaPredicted RBP18.69■□□□□ 0.58
CLK3-211ENST00000563297 FBXO40Q9UH90 709 aa18.69■□□□□ 0.58
CLK3-211ENST00000563297 A0A1W2PQ45 241 aaPredicted RBP18.68■□□□□ 0.58
CLK3-211ENST00000563297 A0A1W2PQY0 241 aa18.68■□□□□ 0.58
CLK3-211ENST00000563297 STAT2P52630 851 aa18.68■□□□□ 0.58
CLK3-211ENST00000563297 PDE1AP54750 535 aa18.68■□□□□ 0.58
CLK3-211ENST00000563297 HDAC1Q13547 482 aaPredicted RBP18.68■□□□□ 0.58
CLK3-211ENST00000563297 ACVR2BQ13705 512 aa18.68■□□□□ 0.58
CLK3-211ENST00000563297 SHHQ15465 462 aa18.68■□□□□ 0.58
CLK3-211ENST00000563297 KLHDC9Q8NEP7 349 aa18.68■□□□□ 0.58
CLK3-211ENST00000563297 STAG1Q8WVM7 1258 aa18.68■□□□□ 0.58
CLK3-211ENST00000563297 CHMP4CQ96CF2 233 aa18.68■□□□□ 0.58
CLK3-211ENST00000563297 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.68■□□□□ 0.58
CLK3-211ENST00000563297 ZHX1Q9UKY1 873 aaPredicted RBP18.68■□□□□ 0.58
CLK3-211ENST00000563297 TSPY2A6NKD2 308 aa18.67■□□□□ 0.58
CLK3-211ENST00000563297 NMT2O60551 498 aa18.67■□□□□ 0.58
CLK3-211ENST00000563297 PLA2G6O60733 806 aa18.67■□□□□ 0.58
CLK3-211ENST00000563297 DUSP11O75319 330 aaKnown RBP18.67■□□□□ 0.58
CLK3-211ENST00000563297 SLC1A4P43007 532 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms