RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 STXBP3O00186 592 aa8.55□□□□□ -1.04
VPS39-204ENST00000561818 MPHOSPH10O00566 681 aaKnown RBP8.55□□□□□ -1.04
VPS39-204ENST00000561818 ZBTB5O15062 677 aa8.55□□□□□ -1.04
VPS39-204ENST00000561818 ASNSP08243 561 aa8.55□□□□□ -1.04
VPS39-204ENST00000561818 CHRNA5P30532 468 aa8.55□□□□□ -1.04
VPS39-204ENST00000561818 SHMT1P34896 483 aa8.55□□□□□ -1.04
VPS39-204ENST00000561818 SLC1A4P43007 532 aa8.55□□□□□ -1.04
VPS39-204ENST00000561818 ADCY7P51828 1080 aa8.55□□□□□ -1.04
VPS39-204ENST00000561818 NDUFA8P51970 172 aa8.55□□□□□ -1.04
VPS39-204ENST00000561818 FOSBP53539 338 aa8.55□□□□□ -1.04
VPS39-204ENST00000561818 EIF6P56537 245 aaKnown RBP8.55□□□□□ -1.04
VPS39-204ENST00000561818 NLRP12P59046 1061 aa8.55□□□□□ -1.04
VPS39-204ENST00000561818 AMPD3Q01432 767 aa8.55□□□□□ -1.04
VPS39-204ENST00000561818 ICA1Q05084 483 aa8.55□□□□□ -1.04
VPS39-204ENST00000561818 ABCB5Q2M3G0 1257 aa8.55□□□□□ -1.04
VPS39-204ENST00000561818 NT5DC1Q5TFE4 455 aa8.55□□□□□ -1.04
VPS39-204ENST00000561818 CIAPIN1Q6FI81 312 aa8.55□□□□□ -1.04
VPS39-204ENST00000561818 DTHD1Q6ZMT9 781 aa8.55□□□□□ -1.04
VPS39-204ENST00000561818 KRBA2Q6ZNG9 492 aa8.55□□□□□ -1.04
VPS39-204ENST00000561818 NEK8Q86SG6 692 aa8.55□□□□□ -1.04
VPS39-204ENST00000561818 FAM160B2Q86V87 743 aa8.55□□□□□ -1.04
VPS39-204ENST00000561818 RAB11FIP4Q86YS3 637 aa8.55□□□□□ -1.04
VPS39-204ENST00000561818 STK11IPQ8N1F8 1099 aa8.55□□□□□ -1.04
VPS39-204ENST00000561818 CUL5Q93034 780 aa8.55□□□□□ -1.04
VPS39-204ENST00000561818 TNFRSF25Q93038 417 aa8.55□□□□□ -1.04
VPS39-204ENST00000561818 CSRNP1Q96S65 589 aa8.55□□□□□ -1.04
VPS39-204ENST00000561818 TUBE1Q9UJT0 475 aa8.55□□□□□ -1.04
VPS39-204ENST00000561818 FBXO2Q9UK22 296 aaPredicted RBP8.55□□□□□ -1.04
VPS39-204ENST00000561818 MRVI1Q9Y6F6 885 aa8.55□□□□□ -1.04
VPS39-204ENST00000561818 ESPNB1AK53 854 aa8.54□□□□□ -1.04
VPS39-204ENST00000561818 SLFN14P0C7P3 912 aa8.54□□□□□ -1.04
VPS39-204ENST00000561818 DPEP1P16444 411 aa8.54□□□□□ -1.04
VPS39-204ENST00000561818 ERCC5P28715 1186 aaPredicted RBP8.54□□□□□ -1.04
VPS39-204ENST00000561818 GUCY1A2P33402 732 aa8.54□□□□□ -1.04
VPS39-204ENST00000561818 SCNN1DP51172 638 aa8.54□□□□□ -1.04
VPS39-204ENST00000561818 GSDMDP57764 484 aa8.54□□□□□ -1.04
VPS39-204ENST00000561818 POSTNQ15063 836 aa8.54□□□□□ -1.04
VPS39-204ENST00000561818 GRIK5Q16478 980 aa8.54□□□□□ -1.04
VPS39-204ENST00000561818 CCDC96Q2M329 555 aa8.54□□□□□ -1.04
VPS39-204ENST00000561818 ANO6Q4KMQ2 910 aa8.54□□□□□ -1.04
VPS39-204ENST00000561818 DCAF15Q66K64 600 aa8.54□□□□□ -1.04
VPS39-204ENST00000561818 OTUD7BQ6GQQ9 843 aa8.54□□□□□ -1.04
VPS39-204ENST00000561818 PPP4R3AQ6IN85 833 aa8.54□□□□□ -1.04
VPS39-204ENST00000561818 CCDC82Q8N4S0 544 aa8.54□□□□□ -1.04
VPS39-204ENST00000561818 CHURC1Q8WUH1 139 aa8.54□□□□□ -1.04
VPS39-204ENST00000561818 LPAR1Q92633 364 aa8.54□□□□□ -1.04
VPS39-204ENST00000561818 SMARCE1Q969G3 411 aa8.54□□□□□ -1.04
VPS39-204ENST00000561818 MRFAP1L1Q96HT8 127 aa8.54□□□□□ -1.04
VPS39-204ENST00000561818 AIFM3Q96NN9 605 aa8.54□□□□□ -1.04
VPS39-204ENST00000561818 GMLQ99445 158 aa8.54□□□□□ -1.04
VPS39-204ENST00000561818 IMPACTQ9P2X3 320 aa8.54□□□□□ -1.04
VPS39-204ENST00000561818 CLIP2Q9UDT6 1046 aa8.54□□□□□ -1.04
VPS39-204ENST00000561818 KCNJ14Q9UNX9 436 aa8.54□□□□□ -1.04
VPS39-204ENST00000561818 KDM3AQ9Y4C1 1321 aa8.54□□□□□ -1.04
VPS39-204ENST00000561818 A0A1B0GVL5 298 aa8.53□□□□□ -1.04
VPS39-204ENST00000561818 SMCO2A6NFE2 343 aa8.53□□□□□ -1.04
VPS39-204ENST00000561818 M0R2N6 131 aa8.53□□□□□ -1.04
VPS39-204ENST00000561818 NMT2O60551 498 aa8.53□□□□□ -1.04
VPS39-204ENST00000561818 AKR1B1P15121 316 aa8.53□□□□□ -1.04
VPS39-204ENST00000561818 MARCKSP29966 332 aaPredicted RBP8.53□□□□□ -1.04
VPS39-204ENST00000561818 ZNF280AP59817 542 aaPredicted RBP8.53□□□□□ -1.04
VPS39-204ENST00000561818 NR5A1Q13285 461 aa8.53□□□□□ -1.04
VPS39-204ENST00000561818 STIM1Q13586 685 aa8.53□□□□□ -1.04
VPS39-204ENST00000561818 CAMK4Q16566 473 aa8.53□□□□□ -1.04
VPS39-204ENST00000561818 WWC2Q6AWC2 1192 aa8.53□□□□□ -1.04
VPS39-204ENST00000561818 SHC4Q6S5L8 630 aa8.53□□□□□ -1.04
VPS39-204ENST00000561818 PIK3AP1Q6ZUJ8 805 aa8.53□□□□□ -1.04
VPS39-204ENST00000561818 APOBEC3FQ8IUX4 373 aaKnown RBP8.53□□□□□ -1.04
VPS39-204ENST00000561818 CKAP2LQ8IYA6 745 aa8.53□□□□□ -1.04
VPS39-204ENST00000561818 SLFN12Q8IYM2 578 aa8.53□□□□□ -1.04
VPS39-204ENST00000561818 SLC44A5Q8NCS7 719 aa8.53□□□□□ -1.04
VPS39-204ENST00000561818 RNF214Q8ND24 703 aa8.53□□□□□ -1.04
VPS39-204ENST00000561818 ANKRD20A12PQ8NF67 263 aa8.53□□□□□ -1.04
VPS39-204ENST00000561818 MTMR8Q96EF0 704 aa8.53□□□□□ -1.04
VPS39-204ENST00000561818 AMNQ9BXJ7 453 aa8.53□□□□□ -1.04
VPS39-204ENST00000561818 CCSER1Q9C0I3 900 aa8.53□□□□□ -1.04
VPS39-204ENST00000561818 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.53□□□□□ -1.04
VPS39-204ENST00000561818 RIC8AQ9NPQ8 531 aa8.53□□□□□ -1.04
VPS39-204ENST00000561818 DDX4Q9NQI0 724 aaKnown RBP8.53□□□□□ -1.04
VPS39-204ENST00000561818 MAP3K20Q9NYL2 800 aaKnown RBP8.53□□□□□ -1.04
VPS39-204ENST00000561818 FAM198AQ9UFP1 575 aa8.53□□□□□ -1.04
VPS39-204ENST00000561818 ZNF646O15015 1829 aaPredicted RBP8.52□□□□□ -1.04
VPS39-204ENST00000561818 TBX3O15119 743 aa8.52□□□□□ -1.05
VPS39-204ENST00000561818 OR52Z1P0C646 297 aa8.52□□□□□ -1.05
VPS39-204ENST00000561818 UBA7P41226 1012 aa8.52□□□□□ -1.05
VPS39-204ENST00000561818 TOB1P50616 345 aaPredicted RBP8.52□□□□□ -1.05
VPS39-204ENST00000561818 USP11P51784 963 aa8.52□□□□□ -1.05
VPS39-204ENST00000561818 STAT2P52630 851 aa8.52□□□□□ -1.05
VPS39-204ENST00000561818 MYL5Q02045 173 aa8.52□□□□□ -1.05
VPS39-204ENST00000561818 MAP3K10Q02779 954 aa8.52□□□□□ -1.05
VPS39-204ENST00000561818 SPAG1Q07617 926 aa8.52□□□□□ -1.05
VPS39-204ENST00000561818 PTGDRQ13258 359 aa8.52□□□□□ -1.05
VPS39-204ENST00000561818 PDIA5Q14554 519 aa8.52□□□□□ -1.05
VPS39-204ENST00000561818 SEPT2Q15019 361 aa8.52□□□□□ -1.05
VPS39-204ENST00000561818 SLFN13Q68D06 897 aa8.52□□□□□ -1.05
VPS39-204ENST00000561818 BTNL9Q6UXG8 535 aa8.52□□□□□ -1.05
VPS39-204ENST00000561818 RASSF8Q8NHQ8 419 aa8.52□□□□□ -1.05
VPS39-204ENST00000561818 CALML4Q96GE6 196 aa8.52□□□□□ -1.05
VPS39-204ENST00000561818 CHAMP1Q96JM3 812 aa8.52□□□□□ -1.05
VPS39-204ENST00000561818 CTAGE1Q96RT6 745 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms