RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 GPAT2Q6NUI2 795 aa10.74□□□□□ -0.69
LDLR-210ENST00000559340 BTNL9Q6UXG8 535 aa10.74□□□□□ -0.69
LDLR-210ENST00000559340 MICU3Q86XE3 530 aa10.74□□□□□ -0.69
LDLR-210ENST00000559340 MB21D1Q8N884 522 aa10.74□□□□□ -0.69
LDLR-210ENST00000559340 SLF1Q9BQI6 1058 aa10.74□□□□□ -0.69
LDLR-210ENST00000559340 GPCPD1Q9NPB8 672 aa10.74□□□□□ -0.69
LDLR-210ENST00000559340 GPHNQ9NQX3 736 aaPredicted RBP10.74□□□□□ -0.69
LDLR-210ENST00000559340 COL11A1P12107 1806 aaPredicted RBP10.74□□□□□ -0.69
LDLR-210ENST00000559340 RLFQ13129 1914 aa10.74□□□□□ -0.69
LDLR-210ENST00000559340 ZNFX1Q9P2E3 1918 aaKnown RBP10.74□□□□□ -0.69
LDLR-210ENST00000559340 CCDC85CA6NKD9 419 aa10.73□□□□□ -0.69
LDLR-210ENST00000559340 KLRF2D3W0D1 207 aa10.73□□□□□ -0.69
LDLR-210ENST00000559340 CPLX1O14810 134 aa10.73□□□□□ -0.69
LDLR-210ENST00000559340 CDKL5O76039 1030 aa10.73□□□□□ -0.69
LDLR-210ENST00000559340 PDIA3P30101 505 aaKnown RBP10.73□□□□□ -0.69
LDLR-210ENST00000559340 RGS19P49795 217 aa10.73□□□□□ -0.69
LDLR-210ENST00000559340 AKAP17AQ02040 695 aaKnown RBP10.73□□□□□ -0.69
LDLR-210ENST00000559340 TREML2Q5T2D2 321 aa10.73□□□□□ -0.69
LDLR-210ENST00000559340 SYDE2Q5VT97 1194 aa10.73□□□□□ -0.69
LDLR-210ENST00000559340 KCTD1Q719H9 257 aa10.73□□□□□ -0.69
LDLR-210ENST00000559340 SMCR8Q8TEV9 937 aaPredicted RBP10.73□□□□□ -0.69
LDLR-210ENST00000559340 ASCC2Q9H1I8 757 aaPredicted RBP10.73□□□□□ -0.69
LDLR-210ENST00000559340 SENP2Q9HC62 589 aa10.73□□□□□ -0.69
LDLR-210ENST00000559340 RBM27Q9P2N5 1060 aaKnown RBP10.73□□□□□ -0.69
LDLR-210ENST00000559340 BRPF3Q9ULD4 1205 aa10.73□□□□□ -0.69
LDLR-210ENST00000559340 PPP1R9AQ9ULJ8 1098 aa10.73□□□□□ -0.69
LDLR-210ENST00000559340 PFKFB2O60825 505 aa10.72□□□□□ -0.69
LDLR-210ENST00000559340 COPB2P35606 906 aa10.72□□□□□ -0.69
LDLR-210ENST00000559340 CCNA1P78396 465 aa10.72□□□□□ -0.69
LDLR-210ENST00000559340 MLLT1Q03111 559 aaPredicted RBP10.72□□□□□ -0.69
LDLR-210ENST00000559340 KIAA1755Q5JYT7 1200 aa10.72□□□□□ -0.69
LDLR-210ENST00000559340 SAMD1Q6SPF0 538 aaPredicted RBP10.72□□□□□ -0.69
LDLR-210ENST00000559340 LBX2Q6XYB7 198 aa10.72□□□□□ -0.69
LDLR-210ENST00000559340 FAM43AQ8N2R8 423 aa10.72□□□□□ -0.69
LDLR-210ENST00000559340 SNX21Q969T3 373 aa10.72□□□□□ -0.69
LDLR-210ENST00000559340 KIFC2Q96AC6 838 aa10.72□□□□□ -0.69
LDLR-210ENST00000559340 NUP88Q99567 741 aaPredicted RBP10.72□□□□□ -0.69
LDLR-210ENST00000559340 P2RX7Q99572 595 aaKnown RBP10.72□□□□□ -0.69
LDLR-210ENST00000559340 PTPN18Q99952 460 aa10.72□□□□□ -0.69
LDLR-210ENST00000559340 MAD2L2Q9UI95 211 aa10.72□□□□□ -0.69
LDLR-210ENST00000559340 RABGAP1Q9Y3P9 1069 aa10.72□□□□□ -0.69
LDLR-210ENST00000559340 FRMPD2Q68DX3 1309 aaPredicted RBP10.72□□□□□ -0.69
LDLR-210ENST00000559340 SMCHD1A6NHR9 2005 aa10.71□□□□□ -0.69
LDLR-210ENST00000559340 IGF2BP3O00425 579 aaKnown RBP eCLIP10.71□□□□□ -0.69
LDLR-210ENST00000559340 GOLGA8HP0CJ92 632 aa10.71□□□□□ -0.69
LDLR-210ENST00000559340 OAZ1P54368 228 aa10.71□□□□□ -0.69
LDLR-210ENST00000559340 HERVK_113P62684 666 aa10.71□□□□□ -0.69
LDLR-210ENST00000559340 COL9A3Q14050 684 aaPredicted RBP10.71□□□□□ -0.69
LDLR-210ENST00000559340 NID2Q14112 1375 aa10.71□□□□□ -0.69
LDLR-210ENST00000559340 BECN1Q14457 450 aa10.71□□□□□ -0.69
LDLR-210ENST00000559340 ARHGEF6Q15052 776 aa10.71□□□□□ -0.69
LDLR-210ENST00000559340 NOL8Q76FK4 1167 aaKnown RBP10.71□□□□□ -0.69
LDLR-210ENST00000559340 HSCBQ8IWL3 235 aa10.71□□□□□ -0.69
LDLR-210ENST00000559340 CCAR1Q8IX12 1150 aaKnown RBP10.71□□□□□ -0.69
LDLR-210ENST00000559340 CCDC144CPQ8IYA2 1237 aa10.71□□□□□ -0.69
LDLR-210ENST00000559340 TRIM22Q8IYM9 498 aa10.71□□□□□ -0.69
LDLR-210ENST00000559340 DOCK3Q8IZD9 2030 aa10.71□□□□□ -0.69
LDLR-210ENST00000559340 RRP36Q96EU6 259 aaKnown RBP10.71□□□□□ -0.69
LDLR-210ENST00000559340 ZIC5Q96T25 663 aa10.71□□□□□ -0.69
LDLR-210ENST00000559340 MYL10Q9BUA6 226 aa10.71□□□□□ -0.69
LDLR-210ENST00000559340 SPZ1Q9BXG8 430 aa10.71□□□□□ -0.69
LDLR-210ENST00000559340 CFHR5Q9BXR6 569 aa10.71□□□□□ -0.69
LDLR-210ENST00000559340 SAGE1Q9NXZ1 904 aa10.71□□□□□ -0.69
LDLR-210ENST00000559340 SEC63Q9UGP8 760 aaKnown RBP10.71□□□□□ -0.69
LDLR-210ENST00000559340 PRR12Q9ULL5 1215 aa10.71□□□□□ -0.69
LDLR-210ENST00000559340 TPCN1Q9ULQ1 816 aa10.71□□□□□ -0.69
LDLR-210ENST00000559340 ADAMTS5Q9UNA0 930 aa10.71□□□□□ -0.69
LDLR-210ENST00000559340 MGAMO43451 1857 aa10.7□□□□□ -0.7
LDLR-210ENST00000559340 SPDYE16A6NNV3 312 aaPredicted RBP10.7□□□□□ -0.7
LDLR-210ENST00000559340 VWA5AO00534 786 aa10.7□□□□□ -0.7
LDLR-210ENST00000559340 TLR2O60603 784 aa10.7□□□□□ -0.7
LDLR-210ENST00000559340 RXRAP19793 462 aa10.7□□□□□ -0.7
LDLR-210ENST00000559340 CCT2P78371 535 aaKnown RBP10.7□□□□□ -0.7
LDLR-210ENST00000559340 SSRP1Q08945 709 aaKnown RBP10.7□□□□□ -0.7
LDLR-210ENST00000559340 STK3Q13188 491 aa10.7□□□□□ -0.7
LDLR-210ENST00000559340 DGKZQ13574 1117 aa10.7□□□□□ -0.7
LDLR-210ENST00000559340 TKFCQ3LXA3 575 aa10.7□□□□□ -0.7
LDLR-210ENST00000559340 TTBK2Q6IQ55 1244 aa10.7□□□□□ -0.7
LDLR-210ENST00000559340 TMTC3Q6ZXV5 915 aa10.7□□□□□ -0.7
LDLR-210ENST00000559340 ADGRF4Q8IZF3 695 aa10.7□□□□□ -0.7
LDLR-210ENST00000559340 STAG2Q8N3U4 1231 aa10.7□□□□□ -0.7
LDLR-210ENST00000559340 GPRC5AQ8NFJ5 357 aa10.7□□□□□ -0.7
LDLR-210ENST00000559340 LARP6Q9BRS8 491 aaKnown RBP10.7□□□□□ -0.7
LDLR-210ENST00000559340 LLPHQ9BRT6 129 aaKnown RBP10.7□□□□□ -0.7
LDLR-210ENST00000559340 MCOLN1Q9GZU1 580 aa10.7□□□□□ -0.7
LDLR-210ENST00000559340 UBA5Q9GZZ9 404 aa10.7□□□□□ -0.7
LDLR-210ENST00000559340 RIOX1Q9H6W3 641 aa10.7□□□□□ -0.7
LDLR-210ENST00000559340 VAT1LQ9HCJ6 419 aa10.7□□□□□ -0.7
LDLR-210ENST00000559340 TSKSQ9UJT2 592 aa10.7□□□□□ -0.7
LDLR-210ENST00000559340 HPS5Q9UPZ3 1129 aa10.7□□□□□ -0.7
LDLR-210ENST00000559340 KIF3AQ9Y496 699 aa10.7□□□□□ -0.7
LDLR-210ENST00000559340 PNMA6FA0A0J9YX94 578 aa10.69□□□□□ -0.7
LDLR-210ENST00000559340 TRPA1O75762 1119 aa10.69□□□□□ -0.7
LDLR-210ENST00000559340 SLC34A2O95436 690 aa10.69□□□□□ -0.7
LDLR-210ENST00000559340 SLC25A27O95847 323 aa10.69□□□□□ -0.7
LDLR-210ENST00000559340 IFNAR1P17181 557 aa10.69□□□□□ -0.7
LDLR-210ENST00000559340 ADD1P35611 737 aaKnown RBP10.69□□□□□ -0.7
LDLR-210ENST00000559340 SLC16A2P36021 539 aa10.69□□□□□ -0.7
LDLR-210ENST00000559340 KIF22Q14807 665 aa10.69□□□□□ -0.7
LDLR-210ENST00000559340 ME3Q16798 604 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms