RNA–Protein interactions for RNA: ENST00000557626.5

TMEM260-215, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 1,262 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-215ENST00000557626 PHOSPHO2Q8TCD6 241 aa16.35■□□□□ 0.21
TMEM260-215ENST00000557626 COL26A1Q96A83 441 aa16.35■□□□□ 0.21
TMEM260-215ENST00000557626 KAZALD1Q96I82 304 aa16.35■□□□□ 0.21
TMEM260-215ENST00000557626 DHX36Q9H2U1 1008 aaKnown RBP16.35■□□□□ 0.21
TMEM260-215ENST00000557626 ALG13Q9NP73 1137 aaKnown RBP16.35■□□□□ 0.21
TMEM260-215ENST00000557626 ACTN1P12814 892 aa16.34■□□□□ 0.21
TMEM260-215ENST00000557626 PLS1Q14651 629 aa16.34■□□□□ 0.21
TMEM260-215ENST00000557626 TRIM67Q6ZTA4 783 aa16.34■□□□□ 0.21
TMEM260-215ENST00000557626 HERC6Q8IVU3 1022 aa16.34■□□□□ 0.21
TMEM260-215ENST00000557626 TEX11Q8IYF3 940 aa16.34■□□□□ 0.21
TMEM260-215ENST00000557626 VWCEQ96DN2 955 aa16.34■□□□□ 0.21
TMEM260-215ENST00000557626 BICC1Q9H694 974 aaKnown RBP16.34■□□□□ 0.21
TMEM260-215ENST00000557626 SPC25Q9HBM1 224 aa16.34■□□□□ 0.21
TMEM260-215ENST00000557626 FAM184BQ9ULE4 1060 aa16.34■□□□□ 0.21
TMEM260-215ENST00000557626 H0Y858 1186 aa16.33■□□□□ 0.2
TMEM260-215ENST00000557626 DUSP11O75319 330 aaKnown RBP16.33■□□□□ 0.2
TMEM260-215ENST00000557626 PHKA1P46020 1223 aa16.33■□□□□ 0.2
TMEM260-215ENST00000557626 IRX5P78411 483 aaPredicted RBP16.33■□□□□ 0.2
TMEM260-215ENST00000557626 MECOMQ03112 1051 aa16.33■□□□□ 0.2
TMEM260-215ENST00000557626 TSR2Q969E8 191 aaKnown RBP16.33■□□□□ 0.2
TMEM260-215ENST00000557626 FSD1Q9BTV5 496 aa16.33■□□□□ 0.2
TMEM260-215ENST00000557626 TLR9Q9NR96 1032 aa16.33■□□□□ 0.2
TMEM260-215ENST00000557626 GH2P01242 217 aa16.32■□□□□ 0.2
TMEM260-215ENST00000557626 PGK2P07205 417 aa16.32■□□□□ 0.2
TMEM260-215ENST00000557626 SCN5AQ14524 2016 aa16.32■□□□□ 0.2
TMEM260-215ENST00000557626 WDR43Q15061 677 aaKnown RBP eCLIP16.32■□□□□ 0.2
TMEM260-215ENST00000557626 DGLUCYQ7Z3D6 616 aa16.32■□□□□ 0.2
TMEM260-215ENST00000557626 DEFB128Q7Z7B8 93 aa16.32■□□□□ 0.2
TMEM260-215ENST00000557626 RNF135Q8IUD6 432 aa16.32■□□□□ 0.2
TMEM260-215ENST00000557626 FAM9BQ8IZU0 186 aa16.32■□□□□ 0.2
TMEM260-215ENST00000557626 POP1Q99575 1024 aaKnown RBP16.32■□□□□ 0.2
TMEM260-215ENST00000557626 KIAA1683Q9H0B3 1180 aa16.32■□□□□ 0.2
TMEM260-215ENST00000557626 HOXC10Q9NYD6 342 aa16.32■□□□□ 0.2
TMEM260-215ENST00000557626 MTUS1Q9ULD2 1270 aa16.32■□□□□ 0.2
TMEM260-215ENST00000557626 COG2Q14746 738 aa16.31■□□□□ 0.2
TMEM260-215ENST00000557626 RABL6Q3YEC7 729 aaPredicted RBP16.31■□□□□ 0.2
TMEM260-215ENST00000557626 GNASQ5JWF2 1037 aa16.31■□□□□ 0.2
TMEM260-215ENST00000557626 ERICH6Q7L0X2 663 aa16.31■□□□□ 0.2
TMEM260-215ENST00000557626 MMP19Q99542 508 aa16.31■□□□□ 0.2
TMEM260-215ENST00000557626 ZHX1Q9UKY1 873 aaPredicted RBP16.31■□□□□ 0.2
TMEM260-215ENST00000557626 SIP14410 1827 aa16.31■□□□□ 0.2
TMEM260-215ENST00000557626 ANKRD11Q6UB99 2663 aaPredicted RBP16.3■□□□□ 0.2
TMEM260-215ENST00000557626 ALDH1L1O75891 902 aa16.3■□□□□ 0.2
TMEM260-215ENST00000557626 VCPP55072 806 aaKnown RBP16.3■□□□□ 0.2
TMEM260-215ENST00000557626 KCTD2Q14681 263 aa16.3■□□□□ 0.2
TMEM260-215ENST00000557626 ATP2B3Q16720 1220 aa16.3■□□□□ 0.2
TMEM260-215ENST00000557626 EP400NLQ6ZTU2 488 aa16.3■□□□□ 0.2
TMEM260-215ENST00000557626 METTL16Q86W50 562 aaKnown RBP16.3■□□□□ 0.2
TMEM260-215ENST00000557626 FOXP4Q8IVH2 680 aaPredicted RBP16.3■□□□□ 0.2
TMEM260-215ENST00000557626 MB21D1Q8N884 522 aa16.3■□□□□ 0.2
TMEM260-215ENST00000557626 SUGCTQ9HAC7 445 aa16.3■□□□□ 0.2
TMEM260-215ENST00000557626 DIS3Q9Y2L1 958 aaKnown RBP16.3■□□□□ 0.2
TMEM260-215ENST00000557626 COL11A1P12107 1806 aaPredicted RBP16.29■□□□□ 0.2
TMEM260-215ENST00000557626 LCHNA4D1U4 455 aa16.29■□□□□ 0.2
TMEM260-215ENST00000557626 LDHCP07864 332 aa16.29■□□□□ 0.2
TMEM260-215ENST00000557626 RAB3GAP1Q15042 981 aa16.29■□□□□ 0.2
TMEM260-215ENST00000557626 ZNF792Q3KQV3 632 aa16.29■□□□□ 0.2
TMEM260-215ENST00000557626 SLC43A3Q8NBI5 491 aa16.29■□□□□ 0.2
TMEM260-215ENST00000557626 ZNF384Q8TF68 577 aa16.29■□□□□ 0.2
TMEM260-215ENST00000557626 AGBL1Q96MI9 1066 aa16.29■□□□□ 0.2
TMEM260-215ENST00000557626 TANGO6Q9C0B7 1094 aa16.29■□□□□ 0.2
TMEM260-215ENST00000557626 TRPV6Q9H1D0 765 aa16.29■□□□□ 0.2
TMEM260-215ENST00000557626 PTPRSQ13332 1948 aa16.28■□□□□ 0.2
TMEM260-215ENST00000557626 B4GALT4O60513 344 aa16.28■□□□□ 0.2
TMEM260-215ENST00000557626 KDM4AO75164 1064 aa16.28■□□□□ 0.2
TMEM260-215ENST00000557626 NBPF7P0C2Y1 421 aaPredicted RBP16.28■□□□□ 0.2
TMEM260-215ENST00000557626 GJA9P57773 515 aa16.28■□□□□ 0.2
TMEM260-215ENST00000557626 GSTO1P78417 241 aa16.28■□□□□ 0.2
TMEM260-215ENST00000557626 RASGRF1Q13972 1273 aa16.28■□□□□ 0.2
TMEM260-215ENST00000557626 COL9A2Q14055 689 aaPredicted RBP16.28■□□□□ 0.2
TMEM260-215ENST00000557626 ADSSL1Q8N142 457 aa16.28■□□□□ 0.2
TMEM260-215ENST00000557626 ANKRD44Q8N8A2 993 aa16.28■□□□□ 0.2
TMEM260-215ENST00000557626 ACER1Q8TDN7 264 aa16.28■□□□□ 0.2
TMEM260-215ENST00000557626 UPF3AQ9H1J1 476 aaKnown RBP16.28■□□□□ 0.2
TMEM260-215ENST00000557626 MAP1BP46821 2468 aaKnown RBP16.28■□□□□ 0.2
TMEM260-215ENST00000557626 PDS5AQ29RF7 1337 aaKnown RBP16.27■□□□□ 0.2
TMEM260-215ENST00000557626 EYA2O00167 538 aa16.27■□□□□ 0.2
TMEM260-215ENST00000557626 NBL1P41271 181 aa16.27■□□□□ 0.2
TMEM260-215ENST00000557626 ITGA7Q13683 1181 aa16.27■□□□□ 0.2
TMEM260-215ENST00000557626 SH3RF3Q8TEJ3 882 aaPredicted RBP16.27■□□□□ 0.2
TMEM260-215ENST00000557626 TGS1Q96RS0 853 aaKnown RBP16.27■□□□□ 0.2
TMEM260-215ENST00000557626 SRCIN1Q9C0H9 1055 aa16.27■□□□□ 0.2
TMEM260-215ENST00000557626 SLC25A27O95847 323 aa16.26■□□□□ 0.19
TMEM260-215ENST00000557626 AVPR2P30518 371 aa16.26■□□□□ 0.19
TMEM260-215ENST00000557626 PABPC5Q96DU9 382 aaKnown RBP16.26■□□□□ 0.19
TMEM260-215ENST00000557626 FOCADQ5VW36 1801 aa16.25■□□□□ 0.19
TMEM260-215ENST00000557626 ZBTB22O15209 634 aa16.25■□□□□ 0.19
TMEM260-215ENST00000557626 ADCY6O43306 1168 aa16.25■□□□□ 0.19
TMEM260-215ENST00000557626 CABYRO75952 493 aa16.25■□□□□ 0.19
TMEM260-215ENST00000557626 HLA-DOAP06340 250 aa16.25■□□□□ 0.19
TMEM260-215ENST00000557626 KCNJ6P48051 423 aa16.25■□□□□ 0.19
TMEM260-215ENST00000557626 ERVK-21P61565 698 aa16.25■□□□□ 0.19
TMEM260-215ENST00000557626 ZXDAP98168 799 aa16.25■□□□□ 0.19
TMEM260-215ENST00000557626 CCDC102BQ68D86 513 aa16.25■□□□□ 0.19
TMEM260-215ENST00000557626 SLC4A10Q6U841 1118 aa16.25■□□□□ 0.19
TMEM260-215ENST00000557626 CXCL17Q6UXB2 119 aa16.25■□□□□ 0.19
TMEM260-215ENST00000557626 ATF7IPQ6VMQ6 1270 aa16.25■□□□□ 0.19
TMEM260-215ENST00000557626 MAPKAPK5Q8IW41 473 aa16.25■□□□□ 0.19
TMEM260-215ENST00000557626 MSL3Q8N5Y2 521 aaKnown RBP16.25■□□□□ 0.19
TMEM260-215ENST00000557626 NKD2Q969F2 451 aaPredicted RBP16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms