RNA–Protein interactions for RNA: ENST00000557454.1

NEDD1-211, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 4

Gene NEDD1, Length 564 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-211ENST00000557454 SH3RF3Q8TEJ3 882 aaPredicted RBP11.67□□□□□ -0.54
NEDD1-211ENST00000557454 SLC9A7Q96T83 725 aa11.67□□□□□ -0.54
NEDD1-211ENST00000557454 SRCIN1Q9C0H9 1055 aa11.67□□□□□ -0.54
NEDD1-211ENST00000557454 KIAA1683Q9H0B3 1180 aa11.67□□□□□ -0.54
NEDD1-211ENST00000557454 ALG13Q9NP73 1137 aaKnown RBP11.67□□□□□ -0.54
NEDD1-211ENST00000557454 LMCD1Q9NZU5 365 aa11.67□□□□□ -0.54
NEDD1-211ENST00000557454 CNPY2Q9Y2B0 182 aa11.67□□□□□ -0.54
NEDD1-211ENST00000557454 RAB3GAP1Q15042 981 aa11.66□□□□□ -0.54
NEDD1-211ENST00000557454 PUS10Q3MIT2 529 aaKnown RBP11.66□□□□□ -0.54
NEDD1-211ENST00000557454 HERC4Q5GLZ8 1057 aaPredicted RBP11.66□□□□□ -0.54
NEDD1-211ENST00000557454 CCDC102BQ68D86 513 aa11.66□□□□□ -0.54
NEDD1-211ENST00000557454 HERC6Q8IVU3 1022 aa11.66□□□□□ -0.54
NEDD1-211ENST00000557454 MAPKAPK5Q8IW41 473 aa11.66□□□□□ -0.54
NEDD1-211ENST00000557454 SUGP1Q8IWZ8 645 aaKnown RBP11.66□□□□□ -0.54
NEDD1-211ENST00000557454 MIER1Q8N108 512 aa11.66□□□□□ -0.54
NEDD1-211ENST00000557454 NEK9Q8TD19 979 aa11.66□□□□□ -0.54
NEDD1-211ENST00000557454 PBXIP1Q96AQ6 731 aa11.66□□□□□ -0.54
NEDD1-211ENST00000557454 ZHX1Q9UKY1 873 aaPredicted RBP11.66□□□□□ -0.54
NEDD1-211ENST00000557454 FAM184BQ9ULE4 1060 aa11.66□□□□□ -0.54
NEDD1-211ENST00000557454 COL4A6Q14031 1691 aa11.65□□□□□ -0.54
NEDD1-211ENST00000557454 LCHNA4D1U4 455 aa11.65□□□□□ -0.54
NEDD1-211ENST00000557454 ADCY6O43306 1168 aa11.65□□□□□ -0.54
NEDD1-211ENST00000557454 DUSP11O75319 330 aaKnown RBP11.65□□□□□ -0.54
NEDD1-211ENST00000557454 ZNF792Q3KQV3 632 aa11.65□□□□□ -0.54
NEDD1-211ENST00000557454 ATG9AQ7Z3C6 839 aa11.65□□□□□ -0.54
NEDD1-211ENST00000557454 BMP8AQ7Z5Y6 402 aa11.65□□□□□ -0.54
NEDD1-211ENST00000557454 DEFB128Q7Z7B8 93 aa11.65□□□□□ -0.54
NEDD1-211ENST00000557454 FOXP4Q8IVH2 680 aaPredicted RBP11.65□□□□□ -0.54
NEDD1-211ENST00000557454 ADHFE1Q8IWW8 467 aa11.65□□□□□ -0.54
NEDD1-211ENST00000557454 NSUN4Q96CB9 384 aaKnown RBP11.65□□□□□ -0.54
NEDD1-211ENST00000557454 MMP19Q99542 508 aa11.65□□□□□ -0.54
NEDD1-211ENST00000557454 UPF3BQ9BZI7 483 aaKnown RBP11.65□□□□□ -0.54
NEDD1-211ENST00000557454 TANGO6Q9C0B7 1094 aa11.65□□□□□ -0.54
NEDD1-211ENST00000557454 TRPV6Q9H1D0 765 aa11.65□□□□□ -0.54
NEDD1-211ENST00000557454 PRKAG3Q9UGI9 489 aa11.65□□□□□ -0.54
NEDD1-211ENST00000557454 MTUS1Q9ULD2 1270 aa11.65□□□□□ -0.54
NEDD1-211ENST00000557454 PALD1Q9ULE6 856 aa11.65□□□□□ -0.54
NEDD1-211ENST00000557454 ATRXP46100 2492 aa11.65□□□□□ -0.54
NEDD1-211ENST00000557454 FLT1P17948 1338 aa11.64□□□□□ -0.55
NEDD1-211ENST00000557454 PDS5AQ29RF7 1337 aaKnown RBP11.64□□□□□ -0.55
NEDD1-211ENST00000557454 ACACBO00763 2458 aa11.64□□□□□ -0.55
NEDD1-211ENST00000557454 PRR23AA6NEV1 266 aa11.64□□□□□ -0.55
NEDD1-211ENST00000557454 TMEM221A6NGB7 291 aa11.64□□□□□ -0.55
NEDD1-211ENST00000557454 KIF28PB7ZC32 967 aa11.64□□□□□ -0.55
NEDD1-211ENST00000557454 M0R296 226 aa11.64□□□□□ -0.55
NEDD1-211ENST00000557454 PFKMP08237 780 aa11.64□□□□□ -0.55
NEDD1-211ENST00000557454 COG2Q14746 738 aa11.64□□□□□ -0.55
NEDD1-211ENST00000557454 GNASQ5JWF2 1037 aa11.64□□□□□ -0.55
NEDD1-211ENST00000557454 SLC43A3Q8NBI5 491 aa11.64□□□□□ -0.55
NEDD1-211ENST00000557454 PHOSPHO2Q8TCD6 241 aa11.64□□□□□ -0.55
NEDD1-211ENST00000557454 AGBL1Q96MI9 1066 aa11.64□□□□□ -0.55
NEDD1-211ENST00000557454 HOXC10Q9NYD6 342 aa11.64□□□□□ -0.55
NEDD1-211ENST00000557454 B4GALT4O60513 344 aa11.63□□□□□ -0.55
NEDD1-211ENST00000557454 LDHCP07864 332 aa11.63□□□□□ -0.55
NEDD1-211ENST00000557454 RFX5P48382 616 aaPredicted RBP11.63□□□□□ -0.55
NEDD1-211ENST00000557454 VCPP55072 806 aaKnown RBP11.63□□□□□ -0.55
NEDD1-211ENST00000557454 GSTO1P78417 241 aa11.63□□□□□ -0.55
NEDD1-211ENST00000557454 RALBP1Q15311 655 aa11.63□□□□□ -0.55
NEDD1-211ENST00000557454 PKN1Q16512 942 aa11.63□□□□□ -0.55
NEDD1-211ENST00000557454 MB21D1Q8N884 522 aa11.63□□□□□ -0.55
NEDD1-211ENST00000557454 TGFBRAP1Q8WUH2 860 aa11.63□□□□□ -0.55
NEDD1-211ENST00000557454 EDAQ92838 391 aa11.63□□□□□ -0.55
NEDD1-211ENST00000557454 CNTNAP3BQ96NU0 1288 aa11.63□□□□□ -0.55
NEDD1-211ENST00000557454 CNTNAP3Q9BZ76 1288 aa11.63□□□□□ -0.55
NEDD1-211ENST00000557454 SIL1Q9H173 461 aa11.63□□□□□ -0.55
NEDD1-211ENST00000557454 UPF3AQ9H1J1 476 aaKnown RBP11.63□□□□□ -0.55
NEDD1-211ENST00000557454 SUGCTQ9HAC7 445 aa11.63□□□□□ -0.55
NEDD1-211ENST00000557454 SPC25Q9HBM1 224 aa11.63□□□□□ -0.55
NEDD1-211ENST00000557454 SAP30BPQ9UHR5 308 aaKnown RBP11.63□□□□□ -0.55
NEDD1-211ENST00000557454 TRPC6Q9Y210 931 aa11.63□□□□□ -0.55
NEDD1-211ENST00000557454 DIS3Q9Y2L1 958 aaKnown RBP11.63□□□□□ -0.55
NEDD1-211ENST00000557454 PLXNA3P51805 1871 aa11.63□□□□□ -0.55
NEDD1-211ENST00000557454 PROB1E7EW31 1015 aa11.62□□□□□ -0.55
NEDD1-211ENST00000557454 H0Y858 1186 aa11.62□□□□□ -0.55
NEDD1-211ENST00000557454 SNAI1O95863 264 aaPredicted RBP11.62□□□□□ -0.55
NEDD1-211ENST00000557454 ACTN1P12814 892 aa11.62□□□□□ -0.55
NEDD1-211ENST00000557454 GJA9P57773 515 aa11.62□□□□□ -0.55
NEDD1-211ENST00000557454 BEX3Q00994 111 aa11.62□□□□□ -0.55
NEDD1-211ENST00000557454 CXCL17Q6UXB2 119 aa11.62□□□□□ -0.55
NEDD1-211ENST00000557454 TRIM67Q6ZTA4 783 aa11.62□□□□□ -0.55
NEDD1-211ENST00000557454 RNF135Q8IUD6 432 aa11.62□□□□□ -0.55
NEDD1-211ENST00000557454 ATG4CQ96DT6 458 aa11.62□□□□□ -0.55
NEDD1-211ENST00000557454 TLR9Q9NR96 1032 aa11.62□□□□□ -0.55
NEDD1-211ENST00000557454 AATFQ9NY61 560 aaKnown RBP eCLIP11.62□□□□□ -0.55
NEDD1-211ENST00000557454 CEP126Q9P2H0 1117 aa11.62□□□□□ -0.55
NEDD1-211ENST00000557454 FAM50BQ9Y247 325 aa11.62□□□□□ -0.55
NEDD1-211ENST00000557454 DMXL1Q9Y485 3027 aa11.62□□□□□ -0.55
NEDD1-211ENST00000557454 CHD6Q8TD26 2715 aa11.61□□□□□ -0.55
NEDD1-211ENST00000557454 CTAGE5O15320 804 aa11.61□□□□□ -0.55
NEDD1-211ENST00000557454 HLA-DOAP06340 250 aa11.61□□□□□ -0.55
NEDD1-211ENST00000557454 ITGA7Q13683 1181 aa11.61□□□□□ -0.55
NEDD1-211ENST00000557454 KCTD2Q14681 263 aa11.61□□□□□ -0.55
NEDD1-211ENST00000557454 PI16Q6UXB8 463 aa11.61□□□□□ -0.55
NEDD1-211ENST00000557454 TBC1D9Q6ZT07 1266 aa11.61□□□□□ -0.55
NEDD1-211ENST00000557454 EP400NLQ6ZTU2 488 aa11.61□□□□□ -0.55
NEDD1-211ENST00000557454 FBXL6Q8N531 539 aa11.61□□□□□ -0.55
NEDD1-211ENST00000557454 FSD1Q9BTV5 496 aa11.61□□□□□ -0.55
NEDD1-211ENST00000557454 IRF2BPLQ9H1B7 796 aa11.61□□□□□ -0.55
NEDD1-211ENST00000557454 RAI14Q9P0K7 980 aa11.61□□□□□ -0.55
NEDD1-211ENST00000557454 GRIN2DO15399 1336 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms