RNA–Protein interactions for RNA: ENST00000557358.1

VPS33B-206, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 4

Gene VPS33B, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-206ENST00000557358 IL17RBQ9NRM6 502 aa16.24■□□□□ 0.19
VPS33B-206ENST00000557358 FBXO40Q9UH90 709 aa16.24■□□□□ 0.19
VPS33B-206ENST00000557358 HTTP42858 3142 aa16.24■□□□□ 0.19
VPS33B-206ENST00000557358 RLFQ13129 1914 aa16.23■□□□□ 0.19
VPS33B-206ENST00000557358 RPTORQ8N122 1335 aa16.23■□□□□ 0.19
VPS33B-206ENST00000557358 ERICH2A1L162 156 aa16.23■□□□□ 0.19
VPS33B-206ENST00000557358 SGSM2O43147 1006 aa16.23■□□□□ 0.19
VPS33B-206ENST00000557358 PLA2G6O60733 806 aa16.23■□□□□ 0.19
VPS33B-206ENST00000557358 KDM4AO75164 1064 aa16.23■□□□□ 0.19
VPS33B-206ENST00000557358 TFRCP02786 760 aaKnown RBP16.23■□□□□ 0.19
VPS33B-206ENST00000557358 ADORA2AP29274 412 aa16.23■□□□□ 0.19
VPS33B-206ENST00000557358 GJA8P48165 433 aa16.23■□□□□ 0.19
VPS33B-206ENST00000557358 OAZ1P54368 228 aa16.23■□□□□ 0.19
VPS33B-206ENST00000557358 SNRNP48Q6IEG0 339 aaKnown RBP16.23■□□□□ 0.19
VPS33B-206ENST00000557358 POTEEQ6S8J3 1075 aa16.23■□□□□ 0.19
VPS33B-206ENST00000557358 RALYLQ86SE5 291 aaKnown RBP16.23■□□□□ 0.19
VPS33B-206ENST00000557358 DGKHQ86XP1 1220 aa16.23■□□□□ 0.19
VPS33B-206ENST00000557358 CPXCR1Q8N123 301 aa16.23■□□□□ 0.19
VPS33B-206ENST00000557358 UNC93B1Q9H1C4 597 aa16.23■□□□□ 0.19
VPS33B-206ENST00000557358 KAT14Q9H8E8 782 aa16.23■□□□□ 0.19
VPS33B-206ENST00000557358 PNMA2Q9UL42 364 aa16.23■□□□□ 0.19
VPS33B-206ENST00000557358 PARP14Q460N5 1801 aa16.23■□□□□ 0.19
VPS33B-206ENST00000557358 A0A0G2JMZ2 1700 aa16.22■□□□□ 0.19
VPS33B-206ENST00000557358 NEDD4P46934 1319 aa16.22■□□□□ 0.19
VPS33B-206ENST00000557358 PLXNB2O15031 1838 aa16.22■□□□□ 0.19
VPS33B-206ENST00000557358 COL11A1P12107 1806 aaPredicted RBP16.22■□□□□ 0.19
VPS33B-206ENST00000557358 B4E1Z4 1266 aa16.22■□□□□ 0.19
VPS33B-206ENST00000557358 HOXC6P09630 235 aa16.22■□□□□ 0.19
VPS33B-206ENST00000557358 PRKAR2AP13861 404 aaKnown RBP16.22■□□□□ 0.19
VPS33B-206ENST00000557358 SART3Q15020 963 aaKnown RBP16.22■□□□□ 0.19
VPS33B-206ENST00000557358 TRIB2Q92519 343 aa16.22■□□□□ 0.19
VPS33B-206ENST00000557358 USP6NLQ92738 828 aa16.22■□□□□ 0.19
VPS33B-206ENST00000557358 DDX11Q96FC9 970 aa16.22■□□□□ 0.19
VPS33B-206ENST00000557358 TMEM47Q9BQJ4 181 aa16.22■□□□□ 0.19
VPS33B-206ENST00000557358 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.22■□□□□ 0.19
VPS33B-206ENST00000557358 SLC38A10Q9HBR0 1119 aa16.22■□□□□ 0.19
VPS33B-206ENST00000557358 CENPFP49454 3210 aa16.22■□□□□ 0.19
VPS33B-206ENST00000557358 ATP2A1O14983 1001 aa16.21■□□□□ 0.19
VPS33B-206ENST00000557358 SGPL1O95470 568 aa16.21■□□□□ 0.19
VPS33B-206ENST00000557358 NOVP48745 357 aa16.21■□□□□ 0.19
VPS33B-206ENST00000557358 KCTD1Q719H9 257 aa16.21■□□□□ 0.19
VPS33B-206ENST00000557358 U2AF1L4Q8WU68 220 aaKnown RBP16.21■□□□□ 0.19
VPS33B-206ENST00000557358 CHMP4CQ96CF2 233 aa16.21■□□□□ 0.19
VPS33B-206ENST00000557358 DEFB118Q96PH6 123 aa16.21■□□□□ 0.19
VPS33B-206ENST00000557358 NBPF3Q9H094 633 aa16.21■□□□□ 0.19
VPS33B-206ENST00000557358 ZNF214Q9UL59 606 aaPredicted RBP16.21■□□□□ 0.19
VPS33B-206ENST00000557358 TKFCQ3LXA3 575 aa16.2■□□□□ 0.18
VPS33B-206ENST00000557358 GPATCH4Q5T3I0 446 aaKnown RBP16.2■□□□□ 0.18
VPS33B-206ENST00000557358 CHST13Q8NET6 341 aa16.2■□□□□ 0.18
VPS33B-206ENST00000557358 NCOA7Q8NI08 942 aa16.2■□□□□ 0.18
VPS33B-206ENST00000557358 ZSCAN10Q96SZ4 725 aaPredicted RBP16.2■□□□□ 0.18
VPS33B-206ENST00000557358 ZKSCAN3Q9BRR0 538 aa16.2■□□□□ 0.18
VPS33B-206ENST00000557358 RAVER2Q9HCJ3 691 aaKnown RBP16.2■□□□□ 0.18
VPS33B-206ENST00000557358 PAK6Q9NQU5 681 aaPredicted RBP16.2■□□□□ 0.18
VPS33B-206ENST00000557358 TACC3Q9Y6A5 838 aa16.2■□□□□ 0.18
VPS33B-206ENST00000557358 ZNFX1Q9P2E3 1918 aaKnown RBP16.19■□□□□ 0.18
VPS33B-206ENST00000557358 PDE4DIPQ5VU43 2346 aa16.19■□□□□ 0.18
VPS33B-206ENST00000557358 MSCO60682 206 aa16.19■□□□□ 0.18
VPS33B-206ENST00000557358 CDC45O75419 566 aa16.19■□□□□ 0.18
VPS33B-206ENST00000557358 IFIT1BQ5T764 474 aaKnown RBP16.19■□□□□ 0.18
VPS33B-206ENST00000557358 RNF20Q5VTR2 975 aa16.19■□□□□ 0.18
VPS33B-206ENST00000557358 OLFML2BQ68BL8 750 aa16.19■□□□□ 0.18
VPS33B-206ENST00000557358 ANKRD35Q8N283 1001 aa16.19■□□□□ 0.18
VPS33B-206ENST00000557358 PNMA1Q8ND90 353 aa16.19■□□□□ 0.18
VPS33B-206ENST00000557358 REPS2Q8NFH8 660 aa16.19■□□□□ 0.18
VPS33B-206ENST00000557358 ESYT1Q9BSJ8 1104 aa16.19■□□□□ 0.18
VPS33B-206ENST00000557358 ANO2Q9NQ90 1003 aa16.19■□□□□ 0.18
VPS33B-206ENST00000557358 ZSWIM5Q9P217 1185 aa16.19■□□□□ 0.18
VPS33B-206ENST00000557358 DIS3Q9Y2L1 958 aaKnown RBP16.19■□□□□ 0.18
VPS33B-206ENST00000557358 ZNF236Q9UL36 1845 aa16.18■□□□□ 0.18
VPS33B-206ENST00000557358 FARP2O94887 1054 aaPredicted RBP16.18■□□□□ 0.18
VPS33B-206ENST00000557358 CNGA1P29973 690 aa16.18■□□□□ 0.18
VPS33B-206ENST00000557358 PTH1RQ03431 593 aa16.18■□□□□ 0.18
VPS33B-206ENST00000557358 CACNB2Q08289 660 aaPredicted RBP16.18■□□□□ 0.18
VPS33B-206ENST00000557358 CCL14Q16627 93 aa16.18■□□□□ 0.18
VPS33B-206ENST00000557358 SYDE2Q5VT97 1194 aa16.18■□□□□ 0.18
VPS33B-206ENST00000557358 MAP4K1Q92918 833 aa16.18■□□□□ 0.18
VPS33B-206ENST00000557358 HTATIP2Q9BUP3 242 aa16.18■□□□□ 0.18
VPS33B-206ENST00000557358 IL25Q9H293 177 aa16.18■□□□□ 0.18
VPS33B-206ENST00000557358 ACAD9Q9H845 621 aa16.18■□□□□ 0.18
VPS33B-206ENST00000557358 RBM8AQ9Y5S9 174 aaKnown RBP16.18■□□□□ 0.18
VPS33B-206ENST00000557358 TNKSO95271 1327 aa16.18■□□□□ 0.18
VPS33B-206ENST00000557358 CYP21A2P08686 494 aa16.17■□□□□ 0.18
VPS33B-206ENST00000557358 PDHBP11177 359 aa16.17■□□□□ 0.18
VPS33B-206ENST00000557358 MAP3K21Q5TCX8 1036 aa16.17■□□□□ 0.18
VPS33B-206ENST00000557358 CCDC174Q6PII3 467 aa16.17■□□□□ 0.18
VPS33B-206ENST00000557358 ANKLE1Q8NAG6 615 aa16.17■□□□□ 0.18
VPS33B-206ENST00000557358 NPLOC4Q8TAT6 608 aa16.17■□□□□ 0.18
VPS33B-206ENST00000557358 GPCPD1Q9NPB8 672 aa16.17■□□□□ 0.18
VPS33B-206ENST00000557358 CCPG1Q9ULG6 757 aa16.17■□□□□ 0.18
VPS33B-206ENST00000557358 PRR12Q9ULL5 1215 aa16.17■□□□□ 0.18
VPS33B-206ENST00000557358 FRMPD2Q68DX3 1309 aaPredicted RBP16.17■□□□□ 0.18
VPS33B-206ENST00000557358 IFIT3O14879 490 aaKnown RBP16.16■□□□□ 0.18
VPS33B-206ENST00000557358 DHX16O60231 1041 aaKnown RBP16.16■□□□□ 0.18
VPS33B-206ENST00000557358 ALAS1P13196 640 aa16.16■□□□□ 0.18
VPS33B-206ENST00000557358 ZNF543Q08ER8 600 aa16.16■□□□□ 0.18
VPS33B-206ENST00000557358 TRIM32Q13049 653 aa16.16■□□□□ 0.18
VPS33B-206ENST00000557358 ASPRV1Q53RT3 343 aa16.16■□□□□ 0.18
VPS33B-206ENST00000557358 BTNL9Q6UXG8 535 aa16.16■□□□□ 0.18
VPS33B-206ENST00000557358 MSL3Q8N5Y2 521 aaKnown RBP16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms