RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 IRX5P78411 483 aaPredicted RBP13□□□□□ -0.33
SYNE2-227ENST00000557307 TFAP4Q01664 338 aa13□□□□□ -0.33
SYNE2-227ENST00000557307 NMIQ13287 307 aaPredicted RBP13□□□□□ -0.33
SYNE2-227ENST00000557307 ZNF444Q8N0Y2 327 aaPredicted RBP13□□□□□ -0.33
SYNE2-227ENST00000557307 ABRAQ8N0Z2 381 aa13□□□□□ -0.33
SYNE2-227ENST00000557307 CPXCR1Q8N123 301 aa13□□□□□ -0.33
SYNE2-227ENST00000557307 NEDD1Q8NHV4 660 aa13□□□□□ -0.33
SYNE2-227ENST00000557307 MKL1Q969V6 931 aa13□□□□□ -0.33
SYNE2-227ENST00000557307 KIFC2Q96AC6 838 aa13□□□□□ -0.33
SYNE2-227ENST00000557307 RAVER2Q9HCJ3 691 aaKnown RBP13□□□□□ -0.33
SYNE2-227ENST00000557307 DDX49Q9Y6V7 483 aaKnown RBP13□□□□□ -0.33
SYNE2-227ENST00000557307 SEPT4O43236 478 aa12.99□□□□□ -0.33
SYNE2-227ENST00000557307 ADCY6O43306 1168 aa12.99□□□□□ -0.33
SYNE2-227ENST00000557307 SLC25A27O95847 323 aa12.99□□□□□ -0.33
SYNE2-227ENST00000557307 TSPY3P0CV98 308 aa12.99□□□□□ -0.33
SYNE2-227ENST00000557307 TSPY8P0CW00 308 aa12.99□□□□□ -0.33
SYNE2-227ENST00000557307 SLFN13Q68D06 897 aa12.99□□□□□ -0.33
SYNE2-227ENST00000557307 ZNF536O15090 1300 aa12.98□□□□□ -0.33
SYNE2-227ENST00000557307 DNM1LO00429 736 aa12.98□□□□□ -0.33
SYNE2-227ENST00000557307 TTLL1O95922 423 aa12.98□□□□□ -0.33
SYNE2-227ENST00000557307 MYCNP04198 464 aaPredicted RBP12.98□□□□□ -0.33
SYNE2-227ENST00000557307 ZNF865P0CJ78 1059 aaPredicted RBP12.98□□□□□ -0.33
SYNE2-227ENST00000557307 MDM2Q00987 491 aaPredicted RBP12.98□□□□□ -0.33
SYNE2-227ENST00000557307 SMC5Q8IY18 1101 aa12.98□□□□□ -0.33
SYNE2-227ENST00000557307 GMCL1P1Q8NEA9 526 aa12.98□□□□□ -0.33
SYNE2-227ENST00000557307 FERMT2Q96AC1 680 aa12.98□□□□□ -0.33
SYNE2-227ENST00000557307 EVI5LQ96CN4 794 aa12.98□□□□□ -0.33
SYNE2-227ENST00000557307 TINF2Q9BSI4 451 aa12.98□□□□□ -0.33
SYNE2-227ENST00000557307 TEX13BQ9BXU2 312 aa12.98□□□□□ -0.33
SYNE2-227ENST00000557307 NACAP1Q9BZK3 213 aa12.98□□□□□ -0.33
SYNE2-227ENST00000557307 SLC38A10Q9HBR0 1119 aa12.98□□□□□ -0.33
SYNE2-227ENST00000557307 MTMR7Q9Y216 660 aa12.98□□□□□ -0.33
SYNE2-227ENST00000557307 ASTN1O14525 1302 aa12.97□□□□□ -0.33
SYNE2-227ENST00000557307 DNAJC25-GNG10A0A024R161 153 aa12.97□□□□□ -0.33
SYNE2-227ENST00000557307 TMEM232C9JQI7 657 aa12.97□□□□□ -0.33
SYNE2-227ENST00000557307 PGK1P00558 417 aa12.97□□□□□ -0.33
SYNE2-227ENST00000557307 PTGS1P23219 599 aa12.97□□□□□ -0.33
SYNE2-227ENST00000557307 RTP1P59025 263 aa12.97□□□□□ -0.33
SYNE2-227ENST00000557307 HAND2P61296 217 aa12.97□□□□□ -0.33
SYNE2-227ENST00000557307 PDE4BQ07343 736 aa12.97□□□□□ -0.33
SYNE2-227ENST00000557307 KCTD2Q14681 263 aa12.97□□□□□ -0.33
SYNE2-227ENST00000557307 LRRC41Q15345 812 aa12.97□□□□□ -0.33
SYNE2-227ENST00000557307 KCTD1Q719H9 257 aa12.97□□□□□ -0.33
SYNE2-227ENST00000557307 PRPF38AQ8NAV1 312 aaKnown RBP12.97□□□□□ -0.33
SYNE2-227ENST00000557307 HOMER2Q9NSB8 354 aa12.97□□□□□ -0.33
SYNE2-227ENST00000557307 MYH6P13533 1939 aa12.96□□□□□ -0.33
SYNE2-227ENST00000557307 MYADML2A6NDP7 307 aa12.96□□□□□ -0.33
SYNE2-227ENST00000557307 ATP2A1O14983 1001 aa12.96□□□□□ -0.33
SYNE2-227ENST00000557307 MSCO60682 206 aa12.96□□□□□ -0.33
SYNE2-227ENST00000557307 SNAI1O95863 264 aaPredicted RBP12.96□□□□□ -0.33
SYNE2-227ENST00000557307 FGAP02671 866 aa12.96□□□□□ -0.33
SYNE2-227ENST00000557307 BMP3P12645 472 aa12.96□□□□□ -0.33
SYNE2-227ENST00000557307 MCCP23508 829 aa12.96□□□□□ -0.33
SYNE2-227ENST00000557307 BMP8BP34820 402 aa12.96□□□□□ -0.33
SYNE2-227ENST00000557307 ADCYAP1R1P41586 468 aa12.96□□□□□ -0.33
SYNE2-227ENST00000557307 LRRFIP1Q32MZ4 808 aaKnown RBP12.96□□□□□ -0.33
SYNE2-227ENST00000557307 SH3RF1Q7Z6J0 888 aa12.96□□□□□ -0.33
SYNE2-227ENST00000557307 TBC1D10CQ8IV04 446 aa12.96□□□□□ -0.33
SYNE2-227ENST00000557307 PLEKHM2Q8IWE5 1019 aa12.96□□□□□ -0.33
SYNE2-227ENST00000557307 AGBL1Q96MI9 1066 aa12.96□□□□□ -0.33
SYNE2-227ENST00000557307 IL25Q9H293 177 aa12.96□□□□□ -0.33
SYNE2-227ENST00000557307 HELLSQ9NRZ9 838 aa12.96□□□□□ -0.33
SYNE2-227ENST00000557307 ANAPC4Q9UJX5 808 aa12.96□□□□□ -0.33
SYNE2-227ENST00000557307 FEM1BQ9UK73 627 aa12.96□□□□□ -0.33
SYNE2-227ENST00000557307 ATP11BQ9Y2G3 1177 aa12.96□□□□□ -0.33
SYNE2-227ENST00000557307 NEDD4P46934 1319 aa12.95□□□□□ -0.34
SYNE2-227ENST00000557307 EYSQ5T1H1 3165 aa12.95□□□□□ -0.34
SYNE2-227ENST00000557307 TSPY2A6NKD2 308 aa12.95□□□□□ -0.34
SYNE2-227ENST00000557307 RANBP6O60518 1105 aaKnown RBP12.95□□□□□ -0.34
SYNE2-227ENST00000557307 ADAMTS4O75173 837 aa12.95□□□□□ -0.34
SYNE2-227ENST00000557307 HSPD1P10809 573 aaKnown RBP12.95□□□□□ -0.34
SYNE2-227ENST00000557307 NOVP48745 357 aa12.95□□□□□ -0.34
SYNE2-227ENST00000557307 CNTN2Q02246 1040 aa12.95□□□□□ -0.34
SYNE2-227ENST00000557307 TRIM60Q495X7 471 aa12.95□□□□□ -0.34
SYNE2-227ENST00000557307 TTBK2Q6IQ55 1244 aa12.95□□□□□ -0.34
SYNE2-227ENST00000557307 SLC39A5Q6ZMH5 540 aa12.95□□□□□ -0.34
SYNE2-227ENST00000557307 CHD1LQ86WJ1 897 aa12.95□□□□□ -0.34
SYNE2-227ENST00000557307 RILPL2Q969X0 211 aa12.95□□□□□ -0.34
SYNE2-227ENST00000557307 PURBQ96QR8 312 aaKnown RBP12.95□□□□□ -0.34
SYNE2-227ENST00000557307 ISY1Q9ULR0 285 aaKnown RBP12.95□□□□□ -0.34
SYNE2-227ENST00000557307 STX8Q9UNK0 236 aa12.95□□□□□ -0.34
SYNE2-227ENST00000557307 CCDC171Q6TFL3 1326 aa12.94□□□□□ -0.34
SYNE2-227ENST00000557307 SYNRGQ9UMZ2 1314 aa12.94□□□□□ -0.34
SYNE2-227ENST00000557307 A0A1W2PPC1 479 aa12.94□□□□□ -0.34
SYNE2-227ENST00000557307 TRIM6-TRIM34B2RNG4 842 aa12.94□□□□□ -0.34
SYNE2-227ENST00000557307 ORC4O43929 436 aa12.94□□□□□ -0.34
SYNE2-227ENST00000557307 ZBED4O75132 1171 aa12.94□□□□□ -0.34
SYNE2-227ENST00000557307 FGRP09769 529 aa12.94□□□□□ -0.34
SYNE2-227ENST00000557307 ITGB8P26012 769 aa12.94□□□□□ -0.34
SYNE2-227ENST00000557307 PDE4AP27815 886 aa12.94□□□□□ -0.34
SYNE2-227ENST00000557307 IRX6P78412 446 aaPredicted RBP12.94□□□□□ -0.34
SYNE2-227ENST00000557307 ALX1Q15699 326 aa12.94□□□□□ -0.34
SYNE2-227ENST00000557307 MCMDC2Q4G0Z9 681 aa12.94□□□□□ -0.34
SYNE2-227ENST00000557307 MUM1L1Q5H9M0 696 aa12.94□□□□□ -0.34
SYNE2-227ENST00000557307 RRP12Q5JTH9 1297 aaKnown RBP12.94□□□□□ -0.34
SYNE2-227ENST00000557307 TMEM63BQ5T3F8 832 aa12.94□□□□□ -0.34
SYNE2-227ENST00000557307 CCDC174Q6PII3 467 aa12.94□□□□□ -0.34
SYNE2-227ENST00000557307 Q7L0L9 218 aa12.94□□□□□ -0.34
SYNE2-227ENST00000557307 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.94□□□□□ -0.34
SYNE2-227ENST00000557307 GMCL1Q96IK5 515 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms