RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005		A0A087WUV0	522 aa	Predicted RBP	5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	FAM13A	O94988	1023 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	CTSW	P56202	376 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	SRL	Q86TD4	932 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	OR8K1	Q8NGG5	319 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	ZNF496	Q96IT1	587 aa	Predicted RBP	5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	PIH1D3	Q9NQM4	214 aa	Known RBP	5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	NIP7	Q9Y221	180 aa	Known RBP eCLIP	5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	EPB41	P11171	864 aa	Known RBP	5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	EEF2	P13639	858 aa	Known RBP	5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	CDC27	P30260	824 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	PCK1	P35558	622 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	POLR2F	P61218	127 aa	Known RBP	5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	RPS6KA1	Q15418	735 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	CALCRL	Q16602	461 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	DENND2C	Q68D51	928 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	ANKRD13C	Q8N6S4	541 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	SMARCC2	Q8TAQ2	1214 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	U2AF1L4	Q8WU68	220 aa	Known RBP	5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	TSKS	Q9UJT2	592 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	LMTK2	Q8IWU2	1503 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	KRIT1	O00522	736 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	CHMP2A	O43633	222 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	POTEJ	P0CG39	1038 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	CTNNA2	P26232	953 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	BCAM	P50895	628 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	PTPN12	Q05209	780 aa	Known RBP	5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	PTGDR	Q13258	359 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	MTMR3	Q13615	1198 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	SLC9C1	Q4G0N8	1177 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	ICE2	Q659A1	982 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	TADA2B	Q86TJ2	420 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	HOOK3	Q86VS8	718 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	CACNA2D3	Q8IZS8	1091 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	SMCR8	Q8TEV9	937 aa	Predicted RBP	5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	FEZ2	Q9UHY8	353 aa	Predicted RBP	5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	PLAA	Q9Y263	795 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	ADGRL3	Q9HAR2	1447 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005		A0A1B0GUA9	196 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	NDUFA10	O95299	355 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	GOLGA8H	P0CJ92	632 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	PHKG2	P15735	406 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	EPHB4	P54760	987 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	KLHL30	Q0D2K2	578 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	INF2	Q27J81	1249 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	FBXW10	Q5XX13	1052 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	METTL16	Q86W50	562 aa	Known RBP	5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	AP1M1	Q9BXS5	423 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	TEX13A	Q9BXU3	409 aa	Predicted RBP	5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	TFCP2L1	Q9NZI6	479 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	MYO1A	Q9UBC5	1043 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	PARP3	Q9Y6F1	533 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	ADGRB1	O14514	1584 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	USP42	Q9H9J4	1324 aa	Known RBP	5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	CCDC160	A6NGH7	325 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	CTDNEP1	O95476	244 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	GCK	P35557	465 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	PDE6B	P35913	854 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	ZNF131	P52739	623 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	APBA1	Q02410	837 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	SETDB1	Q15047	1291 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	UAP1	Q16222	522 aa	Predicted RBP	5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	LCORL	Q8N3X6	602 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	PROCA1	Q8NCQ7	364 aa	Predicted RBP	5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	IRX2	Q9BZI1	471 aa	Predicted RBP	5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	FOXP1	Q9H334	677 aa	Predicted RBP	5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	MTRF1L	Q9UGC7	380 aa	Known RBP	5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	ZBTB21	Q9ULJ3	1066 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	NFU1	Q9UMS0	254 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	PTPN22	Q9Y2R2	807 aa		5.52	□□□□□ -1.53
SYNE2-223	ENST00000557005	SOS2	Q07890	1332 aa	Predicted RBP	5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	PLEKHG3	A1L390	1219 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	KRT5	P13647	590 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	TNFAIP3	P21580	790 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	VSNL1	P62760	191 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	PDCL	Q13371	301 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	FANCB	Q8NB91	859 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	RPGR	Q92834	1020 aa	Known RBP	5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	RPGRIP1	Q96KN7	1286 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	PANK4	Q9NVE7	773 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	PKD2L1	Q9P0L9	805 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	HPCAL4	Q9UM19	191 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	KNDC1	Q76NI1	1749 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	EIF4E1B	A6NMX2	242 aa	Known RBP	5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	HEXIM1	O94992	359 aa	Known RBP	5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	PDE6A	P16499	860 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	PEX19	P40855	299 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	LRRC41	Q15345	812 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	NAA35	Q5VZE5	725 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	APOA5	Q6Q788	366 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	ARHGEF25	Q86VW2	580 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	ARFGAP2	Q8N6H7	521 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	BICD1	Q96G01	975 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	GREM2	Q9H772	168 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	SUGCT	Q9HAC7	445 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	CPSF2	Q9P2I0	782 aa	Known RBP	5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	TNKS	O95271	1327 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	MROH5	Q6ZUA9	1318 aa		5.51	□□□□□ -1.53

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