RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 PORCNQ9H237 461 aa20.46■□□□□ 0.87
SHMT2-225ENST00000556798 CPVLQ9H3G5 476 aa20.46■□□□□ 0.87
SHMT2-225ENST00000556798 ZNFX1Q9P2E3 1918 aaKnown RBP20.46■□□□□ 0.87
SHMT2-225ENST00000556798 BAZ2BQ9UIF8 2168 aaKnown RBP20.46■□□□□ 0.87
SHMT2-225ENST00000556798 HMGB1P09429 215 aaKnown RBP20.45■□□□□ 0.86
SHMT2-225ENST00000556798 FCGRTP55899 365 aa20.45■□□□□ 0.86
SHMT2-225ENST00000556798 SNAP25P60880 206 aa20.45■□□□□ 0.86
SHMT2-225ENST00000556798 NFXL1Q6ZNB6 911 aa20.45■□□□□ 0.86
SHMT2-225ENST00000556798 OTOP1Q7RTM1 612 aa20.45■□□□□ 0.86
SHMT2-225ENST00000556798 MB21D1Q8N884 522 aa20.45■□□□□ 0.86
SHMT2-225ENST00000556798 SPATC1LQ9H0A9 340 aa20.45■□□□□ 0.86
SHMT2-225ENST00000556798 EFCC1Q9HA90 598 aa20.45■□□□□ 0.86
SHMT2-225ENST00000556798 PRR12Q9ULL5 1215 aa20.45■□□□□ 0.86
SHMT2-225ENST00000556798 WDR19Q8NEZ3 1342 aa20.45■□□□□ 0.86
SHMT2-225ENST00000556798 TNPO2O14787 897 aaKnown RBP20.44■□□□□ 0.86
SHMT2-225ENST00000556798 PLA2G6O60733 806 aa20.44■□□□□ 0.86
SHMT2-225ENST00000556798 PARP1P09874 1014 aaKnown RBP20.44■□□□□ 0.86
SHMT2-225ENST00000556798 RPS6KB1P23443 525 aa20.44■□□□□ 0.86
SHMT2-225ENST00000556798 PSMA5P28066 241 aa20.44■□□□□ 0.86
SHMT2-225ENST00000556798 SYDE2Q5VT97 1194 aa20.44■□□□□ 0.86
SHMT2-225ENST00000556798 CATIPQ7Z7H3 387 aa20.44■□□□□ 0.86
SHMT2-225ENST00000556798 RAB11FIP4Q86YS3 637 aa20.44■□□□□ 0.86
SHMT2-225ENST00000556798 ZNF654Q8IZM8 581 aa20.44■□□□□ 0.86
SHMT2-225ENST00000556798 NUP133Q8WUM0 1156 aa20.44■□□□□ 0.86
SHMT2-225ENST00000556798 MOV10L1Q9BXT6 1211 aaKnown RBP20.44■□□□□ 0.86
SHMT2-225ENST00000556798 CCDC69A6NI79 296 aa20.43■□□□□ 0.86
SHMT2-225ENST00000556798 ZBED4O75132 1171 aa20.43■□□□□ 0.86
SHMT2-225ENST00000556798 LIFRP42702 1097 aa20.43■□□□□ 0.86
SHMT2-225ENST00000556798 CCNA1P78396 465 aa20.43■□□□□ 0.86
SHMT2-225ENST00000556798 TROAPQ12815 778 aa20.43■□□□□ 0.86
SHMT2-225ENST00000556798 ASPRV1Q53RT3 343 aa20.43■□□□□ 0.86
SHMT2-225ENST00000556798 GPATCH4Q5T3I0 446 aaKnown RBP20.43■□□□□ 0.86
SHMT2-225ENST00000556798 WDR78Q5VTH9 848 aa20.43■□□□□ 0.86
SHMT2-225ENST00000556798 BTNL9Q6UXG8 535 aa20.43■□□□□ 0.86
SHMT2-225ENST00000556798 CCAR1Q8IX12 1150 aaKnown RBP20.43■□□□□ 0.86
SHMT2-225ENST00000556798 CPXCR1Q8N123 301 aa20.43■□□□□ 0.86
SHMT2-225ENST00000556798 STAG2Q8N3U4 1231 aa20.43■□□□□ 0.86
SHMT2-225ENST00000556798 UPF3BQ9BZI7 483 aaKnown RBP20.43■□□□□ 0.86
SHMT2-225ENST00000556798 UBA5Q9GZZ9 404 aa20.43■□□□□ 0.86
SHMT2-225ENST00000556798 SLC38A10Q9HBR0 1119 aa20.43■□□□□ 0.86
SHMT2-225ENST00000556798 ZNF214Q9UL59 606 aaPredicted RBP20.43■□□□□ 0.86
SHMT2-225ENST00000556798 CTDP1Q9Y5B0 961 aaPredicted RBP20.43■□□□□ 0.86
SHMT2-225ENST00000556798 RXRAP19793 462 aa20.42■□□□□ 0.86
SHMT2-225ENST00000556798 SLC4A3P48751 1232 aa20.42■□□□□ 0.86
SHMT2-225ENST00000556798 FGD1P98174 961 aa20.42■□□□□ 0.86
SHMT2-225ENST00000556798 GRM4Q14833 912 aa20.42■□□□□ 0.86
SHMT2-225ENST00000556798 CCDC174Q6PII3 467 aa20.42■□□□□ 0.86
SHMT2-225ENST00000556798 Q6ZUG5 572 aa20.42■□□□□ 0.86
SHMT2-225ENST00000556798 RAVER2Q9HCJ3 691 aaKnown RBP20.42■□□□□ 0.86
SHMT2-225ENST00000556798 ZSWIM6Q9HCJ5 1215 aa20.42■□□□□ 0.86
SHMT2-225ENST00000556798 MAD2L2Q9UI95 211 aa20.42■□□□□ 0.86
SHMT2-225ENST00000556798 PLXNA1Q9UIW2 1896 aa20.41■□□□□ 0.86
SHMT2-225ENST00000556798 TAL1P17542 331 aaPredicted RBP20.41■□□□□ 0.86
SHMT2-225ENST00000556798 ARHGEF6Q15052 776 aa20.41■□□□□ 0.86
SHMT2-225ENST00000556798 SNRNP48Q6IEG0 339 aaKnown RBP20.41■□□□□ 0.86
SHMT2-225ENST00000556798 RUFY3Q7L099 469 aa20.41■□□□□ 0.86
SHMT2-225ENST00000556798 NCAPG2Q86XI2 1143 aa20.41■□□□□ 0.86
SHMT2-225ENST00000556798 CCDC144CPQ8IYA2 1237 aa20.41■□□□□ 0.86
SHMT2-225ENST00000556798 TMTC2Q8N394 836 aa20.41■□□□□ 0.86
SHMT2-225ENST00000556798 CWC22Q9HCG8 908 aaKnown RBP20.41■□□□□ 0.86
SHMT2-225ENST00000556798 GABRQQ9UN88 632 aa20.41■□□□□ 0.86
SHMT2-225ENST00000556798 SLC12A7Q9Y666 1083 aa20.41■□□□□ 0.86
SHMT2-225ENST00000556798 ZNF236Q9UL36 1845 aa20.41■□□□□ 0.86
SHMT2-225ENST00000556798 PALM3A6NDB9 673 aaPredicted RBP20.4■□□□□ 0.86
SHMT2-225ENST00000556798 ZNF536O15090 1300 aa20.4■□□□□ 0.86
SHMT2-225ENST00000556798 DDAH1O94760 285 aa20.4■□□□□ 0.86
SHMT2-225ENST00000556798 ERCC3P19447 782 aa20.4■□□□□ 0.86
SHMT2-225ENST00000556798 MAPK4P31152 587 aa20.4■□□□□ 0.86
SHMT2-225ENST00000556798 STAT3P40763 770 aa20.4■□□□□ 0.86
SHMT2-225ENST00000556798 ANAPC15P60006 121 aa20.4■□□□□ 0.86
SHMT2-225ENST00000556798 PRKCZQ05513 592 aa20.4■□□□□ 0.86
SHMT2-225ENST00000556798 GPR142Q7Z601 462 aa20.4■□□□□ 0.86
SHMT2-225ENST00000556798 SGMS1Q86VZ5 419 aa20.4■□□□□ 0.86
SHMT2-225ENST00000556798 MICU3Q86XE3 530 aa20.4■□□□□ 0.86
SHMT2-225ENST00000556798 COA7Q96BR5 231 aa20.4■□□□□ 0.86
SHMT2-225ENST00000556798 TEX13BQ9BXU2 312 aa20.4■□□□□ 0.86
SHMT2-225ENST00000556798 TM6SF1Q9BZW5 370 aa20.4■□□□□ 0.86
SHMT2-225ENST00000556798 MCOLN1Q9GZU1 580 aa20.4■□□□□ 0.86
SHMT2-225ENST00000556798 RANBP17Q9H2T7 1088 aaKnown RBP20.4■□□□□ 0.86
SHMT2-225ENST00000556798 BRPF3Q9ULD4 1205 aa20.4■□□□□ 0.86
SHMT2-225ENST00000556798 CYP46A1Q9Y6A2 500 aa20.4■□□□□ 0.86
SHMT2-225ENST00000556798 RBBP6Q7Z6E9 1792 aaKnown RBP20.39■□□□□ 0.86
SHMT2-225ENST00000556798 HTTP42858 3142 aa20.39■□□□□ 0.85
SHMT2-225ENST00000556798 PLEKHH3Q7Z736 793 aa20.39■□□□□ 0.85
SHMT2-225ENST00000556798 RIOX2Q8IUF8 465 aa20.39■□□□□ 0.85
SHMT2-225ENST00000556798 BRF1Q92994 677 aa20.39■□□□□ 0.85
SHMT2-225ENST00000556798 SRRDQ9UH36 339 aa20.39■□□□□ 0.85
SHMT2-225ENST00000556798 RIPK3Q9Y572 518 aa20.39■□□□□ 0.85
SHMT2-225ENST00000556798 KLF18A0A0U1RQI7 1052 aa20.38■□□□□ 0.85
SHMT2-225ENST00000556798 KLRF2D3W0D1 207 aa20.38■□□□□ 0.85
SHMT2-225ENST00000556798 DHX16O60231 1041 aaKnown RBP20.38■□□□□ 0.85
SHMT2-225ENST00000556798 GNRH1P01148 92 aa20.38■□□□□ 0.85
SHMT2-225ENST00000556798 FDX1P10109 184 aa20.38■□□□□ 0.85
SHMT2-225ENST00000556798 APOBRQ0VD83 1088 aa20.38■□□□□ 0.85
SHMT2-225ENST00000556798 APOA5Q6Q788 366 aa20.38■□□□□ 0.85
SHMT2-225ENST00000556798 ADGRF4Q8IZF3 695 aa20.38■□□□□ 0.85
SHMT2-225ENST00000556798 SHCBP1Q8NEM2 672 aa20.38■□□□□ 0.85
SHMT2-225ENST00000556798 CTCFLQ8NI51 663 aaPredicted RBP20.38■□□□□ 0.85
SHMT2-225ENST00000556798 AGBL1Q96MI9 1066 aa20.38■□□□□ 0.85
SHMT2-225ENST00000556798 VAT1LQ9HCJ6 419 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms