RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	CCSAP	Q6IQ19	270 aa	Predicted RBP	15.2	■□□□□ 0.02
SHMT2-223	ENST00000556689	MAMDC4	Q6UXC1	1216 aa		15.2	■□□□□ 0.02
SHMT2-223	ENST00000556689	VTI1A	Q96AJ9	217 aa		15.2	■□□□□ 0.02
SHMT2-223	ENST00000556689	TIFA	Q96CG3	184 aa		15.2	■□□□□ 0.02
SHMT2-223	ENST00000556689	HAUS7	Q99871	368 aa		15.2	■□□□□ 0.02
SHMT2-223	ENST00000556689	TEX13B	Q9BXU2	312 aa		15.2	■□□□□ 0.02
SHMT2-223	ENST00000556689	SPTBN5	Q9NRC6	3674 aa	Known RBP	15.2	■□□□□ 0.02
SHMT2-223	ENST00000556689	ROBO3	Q96MS0	1386 aa		15.2	■□□□□ 0.02
SHMT2-223	ENST00000556689		A0A0G2JMZ2	1700 aa		15.2	■□□□□ 0.02
SHMT2-223	ENST00000556689	ELP1	O95163	1332 aa		15.19	■□□□□ 0.02
SHMT2-223	ENST00000556689	SYNRG	Q9UMZ2	1314 aa		15.19	■□□□□ 0.02
SHMT2-223	ENST00000556689	SMCHD1	A6NHR9	2005 aa		15.19	■□□□□ 0.02
SHMT2-223	ENST00000556689	TJAP1	Q5JTD0	557 aa		15.19	■□□□□ 0.02
SHMT2-223	ENST00000556689	SNRNP48	Q6IEG0	339 aa	Known RBP	15.19	■□□□□ 0.02
SHMT2-223	ENST00000556689	MFSD5	Q6N075	450 aa		15.19	■□□□□ 0.02
SHMT2-223	ENST00000556689	CCDC174	Q6PII3	467 aa		15.19	■□□□□ 0.02
SHMT2-223	ENST00000556689	ZNF467	Q7Z7K2	595 aa	Predicted RBP	15.19	■□□□□ 0.02
SHMT2-223	ENST00000556689	PRPF38A	Q8NAV1	312 aa	Known RBP	15.19	■□□□□ 0.02
SHMT2-223	ENST00000556689	GLT1D1	Q96MS3	346 aa		15.19	■□□□□ 0.02
SHMT2-223	ENST00000556689	SLF1	Q9BQI6	1058 aa		15.19	■□□□□ 0.02
SHMT2-223	ENST00000556689	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	15.19	■□□□□ 0.02	5e-8	■■■□□ 18.8
SHMT2-223	ENST00000556689	SPC25	Q9HBM1	224 aa		15.19	■□□□□ 0.02
SHMT2-223	ENST00000556689	ZHX1	Q9UKY1	873 aa	Predicted RBP	15.19	■□□□□ 0.02
SHMT2-223	ENST00000556689	RIPK3	Q9Y572	518 aa		15.19	■□□□□ 0.02
SHMT2-223	ENST00000556689	MROH7	Q68CQ1	1323 aa		15.18	■□□□□ 0.02
SHMT2-223	ENST00000556689	NAV1	Q8NEY1	1877 aa		15.18	■□□□□ 0.02
SHMT2-223	ENST00000556689	DNAJC25-GNG10	A0A024R161	153 aa		15.18	■□□□□ 0.02
SHMT2-223	ENST00000556689		F5H6K3	240 aa		15.18	■□□□□ 0.02
SHMT2-223	ENST00000556689	ZBED4	O75132	1171 aa		15.18	■□□□□ 0.02
SHMT2-223	ENST00000556689	CHGB	P05060	677 aa		15.18	■□□□□ 0.02
SHMT2-223	ENST00000556689	MS4A1	P11836	297 aa		15.18	■□□□□ 0.02
SHMT2-223	ENST00000556689	SLC4A3	P48751	1232 aa		15.18	■□□□□ 0.02
SHMT2-223	ENST00000556689	CDK7	P50613	346 aa		15.18	■□□□□ 0.02
SHMT2-223	ENST00000556689	HNRNPU	Q00839	825 aa	Known RBP eCLIP	15.18	■□□□□ 0.02
SHMT2-223	ENST00000556689	KLRC3	Q07444	240 aa		15.18	■□□□□ 0.02
SHMT2-223	ENST00000556689	PPIG	Q13427	754 aa	Known RBP eCLIP	15.18	■□□□□ 0.02	3e-10	■□□□□ 10.6
SHMT2-223	ENST00000556689	ACVR2B	Q13705	512 aa		15.18	■□□□□ 0.02
SHMT2-223	ENST00000556689	ZSCAN25	Q6NSZ9	544 aa		15.18	■□□□□ 0.02
SHMT2-223	ENST00000556689	SIRT2	Q8IXJ6	389 aa		15.18	■□□□□ 0.02
SHMT2-223	ENST00000556689	PCSK9	Q8NBP7	692 aa	Known RBP	15.18	■□□□□ 0.02
SHMT2-223	ENST00000556689	NUP88	Q99567	741 aa	Predicted RBP	15.18	■□□□□ 0.02
SHMT2-223	ENST00000556689	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	15.18	■□□□□ 0.02	2e-16	■■□□□ 13.4
SHMT2-223	ENST00000556689	MKNK2	Q9HBH9	465 aa		15.18	■□□□□ 0.02
SHMT2-223	ENST00000556689	NYAP2	Q9P242	653 aa		15.18	■□□□□ 0.02
SHMT2-223	ENST00000556689	TBX21	Q9UL17	535 aa		15.18	■□□□□ 0.02
SHMT2-223	ENST00000556689	CTDP1	Q9Y5B0	961 aa	Predicted RBP	15.18	■□□□□ 0.02
SHMT2-223	ENST00000556689	ZBED9	Q6R2W3	1325 aa		15.17	■□□□□ 0.02
SHMT2-223	ENST00000556689	ATP2A1	O14983	1001 aa		15.17	■□□□□ 0.02
SHMT2-223	ENST00000556689	ASGR1	P07306	291 aa		15.17	■□□□□ 0.02
SHMT2-223	ENST00000556689	C6orf222	P0C671	652 aa	Predicted RBP	15.17	■□□□□ 0.02
SHMT2-223	ENST00000556689	CST5	P28325	142 aa	Predicted RBP	15.17	■□□□□ 0.02
SHMT2-223	ENST00000556689	TMEM240	Q5SV17	173 aa		15.17	■□□□□ 0.02
SHMT2-223	ENST00000556689	CCDC129	Q6ZRS4	1044 aa		15.17	■□□□□ 0.02
SHMT2-223	ENST00000556689	C16orf59	Q7L2K0	433 aa		15.17	■□□□□ 0.02
SHMT2-223	ENST00000556689	CPXCR1	Q8N123	301 aa		15.17	■□□□□ 0.02
SHMT2-223	ENST00000556689	TMEM199	Q8N511	208 aa		15.17	■□□□□ 0.02
SHMT2-223	ENST00000556689	USP38	Q8NB14	1042 aa		15.17	■□□□□ 0.02
SHMT2-223	ENST00000556689	PUS7L	Q9H0K6	701 aa	Known RBP	15.17	■□□□□ 0.02
SHMT2-223	ENST00000556689	ABHD16B	Q9H3Z7	469 aa		15.17	■□□□□ 0.02
SHMT2-223	ENST00000556689	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	15.17	■□□□□ 0.02
SHMT2-223	ENST00000556689	ARPP21	Q9UBL0	812 aa	Predicted RBP	15.17	■□□□□ 0.02
SHMT2-223	ENST00000556689	ZNFX1	Q9P2E3	1918 aa	Known RBP	15.17	■□□□□ 0.02
SHMT2-223	ENST00000556689	MYADML2	A6NDP7	307 aa		15.16	■□□□□ 0.02
SHMT2-223	ENST00000556689	ARVCF	O00192	962 aa		15.16	■□□□□ 0.02
SHMT2-223	ENST00000556689	NDUFB10	O96000	172 aa		15.16	■□□□□ 0.02
SHMT2-223	ENST00000556689	SBK1	Q52WX2	424 aa		15.16	■□□□□ 0.02
SHMT2-223	ENST00000556689	GNAS	Q5JWF2	1037 aa		15.16	■□□□□ 0.02
SHMT2-223	ENST00000556689	STK11IP	Q8N1F8	1099 aa		15.16	■□□□□ 0.02
SHMT2-223	ENST00000556689	ANKRD35	Q8N283	1001 aa		15.16	■□□□□ 0.02
SHMT2-223	ENST00000556689	GAS2L1	Q99501	681 aa	Predicted RBP	15.16	■□□□□ 0.02
SHMT2-223	ENST00000556689	CLIP2	Q9UDT6	1046 aa		15.16	■□□□□ 0.02
SHMT2-223	ENST00000556689		A0A0U1RQG5	324 aa	Predicted RBP	15.15	■□□□□ 0.02
SHMT2-223	ENST00000556689	TNFRSF10A	O00220	468 aa		15.15	■□□□□ 0.02
SHMT2-223	ENST00000556689	CSF2RA	P15509	400 aa		15.15	■□□□□ 0.02
SHMT2-223	ENST00000556689	RASA1	P20936	1047 aa		15.15	■□□□□ 0.02
SHMT2-223	ENST00000556689	GJA9	P57773	515 aa		15.15	■□□□□ 0.02
SHMT2-223	ENST00000556689	IRX5	P78411	483 aa	Predicted RBP	15.15	■□□□□ 0.02
SHMT2-223	ENST00000556689	CCDC144B	Q3MJ40	725 aa		15.15	■□□□□ 0.02
SHMT2-223	ENST00000556689	KIFC2	Q96AC6	838 aa		15.15	■□□□□ 0.02
SHMT2-223	ENST00000556689	STRBP	Q96SI9	672 aa	Known RBP	15.15	■□□□□ 0.02
SHMT2-223	ENST00000556689	PBX4	Q9BYU1	374 aa		15.15	■□□□□ 0.02
SHMT2-223	ENST00000556689	RAVER2	Q9HCJ3	691 aa	Known RBP	15.15	■□□□□ 0.02
SHMT2-223	ENST00000556689	ZBTB40	Q9NUA8	1239 aa		15.15	■□□□□ 0.02
SHMT2-223	ENST00000556689	FBXO40	Q9UH90	709 aa		15.15	■□□□□ 0.02
SHMT2-223	ENST00000556689	GRXCR1	A8MXD5	290 aa		15.14	■□□□□ 0.01
SHMT2-223	ENST00000556689	MINDY4B	A8MYZ0	360 aa		15.14	■□□□□ 0.01
SHMT2-223	ENST00000556689	TLR3	O15455	904 aa	Known RBP	15.14	■□□□□ 0.01
SHMT2-223	ENST00000556689	PBX2	P40425	430 aa		15.14	■□□□□ 0.01
SHMT2-223	ENST00000556689	RASIP1	Q5U651	963 aa		15.14	■□□□□ 0.01
SHMT2-223	ENST00000556689	GIMAP6	Q6P9H5	292 aa		15.14	■□□□□ 0.01
SHMT2-223	ENST00000556689	ZNF365	Q70YC5	407 aa		15.14	■□□□□ 0.01
SHMT2-223	ENST00000556689	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	15.14	■□□□□ 0.01
SHMT2-223	ENST00000556689	ZNF444	Q8N0Y2	327 aa	Predicted RBP	15.14	■□□□□ 0.01
SHMT2-223	ENST00000556689	CHST13	Q8NET6	341 aa		15.14	■□□□□ 0.01
SHMT2-223	ENST00000556689	ATXN2L	Q8WWM7	1075 aa	Known RBP	15.14	■□□□□ 0.01
SHMT2-223	ENST00000556689	PPM1E	Q8WY54	764 aa		15.14	■□□□□ 0.01
SHMT2-223	ENST00000556689	UPF3A	Q9H1J1	476 aa	Known RBP	15.14	■□□□□ 0.01
SHMT2-223	ENST00000556689	SLC38A10	Q9HBR0	1119 aa		15.14	■□□□□ 0.01
SHMT2-223	ENST00000556689	FEM1B	Q9UK73	627 aa		15.14	■□□□□ 0.01
SHMT2-223	ENST00000556689	DDX19B	Q9UMR2	479 aa		15.14	■□□□□ 0.01

Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms