RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 MYPNQ86TC9 1320 aa12.94□□□□□ -0.34
SHMT2-220ENST00000555634 A0A0G2JLL6 359 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-220ENST00000555634 USP17L15C9J2P7 530 aa12.94□□□□□ -0.34
SHMT2-220ENST00000555634 USP17L13C9JLJ4 530 aa12.94□□□□□ -0.34
SHMT2-220ENST00000555634 USP17L11C9JVI0 530 aa12.94□□□□□ -0.34
SHMT2-220ENST00000555634 USP17L18D6R9N7 530 aa12.94□□□□□ -0.34
SHMT2-220ENST00000555634 USP17L22D6RA61 530 aa12.94□□□□□ -0.34
SHMT2-220ENST00000555634 USP17L17D6RBQ6 530 aa12.94□□□□□ -0.34
SHMT2-220ENST00000555634 USP17L19D6RCP7 530 aa12.94□□□□□ -0.34
SHMT2-220ENST00000555634 USP17L20D6RJB6 530 aa12.94□□□□□ -0.34
SHMT2-220ENST00000555634 IRF6O14896 467 aa12.94□□□□□ -0.34
SHMT2-220ENST00000555634 PLA2G6O60733 806 aa12.94□□□□□ -0.34
SHMT2-220ENST00000555634 OSBPP22059 807 aa12.94□□□□□ -0.34
SHMT2-220ENST00000555634 NUCB2P80303 420 aa12.94□□□□□ -0.34
SHMT2-220ENST00000555634 USP17L24Q0WX57 530 aa12.94□□□□□ -0.34
SHMT2-220ENST00000555634 SH3D19Q5HYK7 790 aa12.94□□□□□ -0.34
SHMT2-220ENST00000555634 RGMBQ6NW40 437 aa12.94□□□□□ -0.34
SHMT2-220ENST00000555634 SAMD1Q6SPF0 538 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-220ENST00000555634 PRRT2Q7Z6L0 340 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-220ENST00000555634 PHKBQ93100 1093 aa12.94□□□□□ -0.34
SHMT2-220ENST00000555634 CCDC102AQ96A19 550 aa12.94□□□□□ -0.34
SHMT2-220ENST00000555634 HHIPL1Q96JK4 782 aa12.94□□□□□ -0.34
SHMT2-220ENST00000555634 C8orf76Q96K31 380 aa12.94□□□□□ -0.34
SHMT2-220ENST00000555634 NUP88Q99567 741 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-220ENST00000555634 CIZ1Q9ULV3 898 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-220ENST00000555634 KCNH4Q9UQ05 1017 aa12.94□□□□□ -0.34
SHMT2-220ENST00000555634 TLL2Q9Y6L7 1015 aa12.94□□□□□ -0.34
SHMT2-220ENST00000555634 WDR33Q9C0J8 1336 aaKnown RBP12.93□□□□□ -0.34
SHMT2-220ENST00000555634 VPS37CA5D8V6 355 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-220ENST00000555634 PRPF3O43395 683 aaKnown RBP12.93□□□□□ -0.34
SHMT2-220ENST00000555634 SCG2P13521 617 aa12.93□□□□□ -0.34
SHMT2-220ENST00000555634 SLC4A3P48751 1232 aa12.93□□□□□ -0.34
SHMT2-220ENST00000555634 FMR1Q06787 632 aaKnown RBP eCLIP12.93□□□□□ -0.34
SHMT2-220ENST00000555634 SREBF2Q12772 1141 aa12.93□□□□□ -0.34
SHMT2-220ENST00000555634 CST9Q5W186 159 aa12.93□□□□□ -0.34
SHMT2-220ENST00000555634 LARP1BQ659C4 914 aaKnown RBP12.93□□□□□ -0.34
SHMT2-220ENST00000555634 OTUD7BQ6GQQ9 843 aa12.93□□□□□ -0.34
SHMT2-220ENST00000555634 PPP1R18Q6NYC8 613 aa12.93□□□□□ -0.34
SHMT2-220ENST00000555634 HEATR3Q7Z4Q2 680 aa12.93□□□□□ -0.34
SHMT2-220ENST00000555634 SAPCD2Q86UD0 394 aa12.93□□□□□ -0.34
SHMT2-220ENST00000555634 SIAH1Q8IUQ4 282 aa12.93□□□□□ -0.34
SHMT2-220ENST00000555634 STAG2Q8N3U4 1231 aa12.93□□□□□ -0.34
SHMT2-220ENST00000555634 PRPF38AQ8NAV1 312 aaKnown RBP12.93□□□□□ -0.34
SHMT2-220ENST00000555634 SMARCC2Q8TAQ2 1214 aa12.93□□□□□ -0.34
SHMT2-220ENST00000555634 GTF3C2Q8WUA4 911 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-220ENST00000555634 KIFC2Q96AC6 838 aa12.93□□□□□ -0.34
SHMT2-220ENST00000555634 ALG1Q9BT22 464 aa12.93□□□□□ -0.34
SHMT2-220ENST00000555634 AGTPBP1Q9UPW5 1226 aa12.93□□□□□ -0.34
SHMT2-220ENST00000555634 RLFQ13129 1914 aa12.92□□□□□ -0.34
SHMT2-220ENST00000555634 MANSC4A6NHS7 340 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-220ENST00000555634 JAK2O60674 1132 aa12.92□□□□□ -0.34
SHMT2-220ENST00000555634 ZBED4O75132 1171 aa12.92□□□□□ -0.34
SHMT2-220ENST00000555634 CALML3P27482 149 aa12.92□□□□□ -0.34
SHMT2-220ENST00000555634 CDC37Q16543 378 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-220ENST00000555634 PFKFB3Q16875 520 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-220ENST00000555634 SPRYD7Q5W111 196 aa12.92□□□□□ -0.34
SHMT2-220ENST00000555634 ADGRF4Q8IZF3 695 aa12.92□□□□□ -0.34
SHMT2-220ENST00000555634 CMTR1Q8N1G2 835 aaKnown RBP12.92□□□□□ -0.34
SHMT2-220ENST00000555634 SRBD1Q8N5C6 995 aaKnown RBP12.92□□□□□ -0.34
SHMT2-220ENST00000555634 RGS22Q8NE09 1264 aa12.92□□□□□ -0.34
SHMT2-220ENST00000555634 PIBF1Q8WXW3 757 aa12.92□□□□□ -0.34
SHMT2-220ENST00000555634 GLT8D2Q9H1C3 349 aa12.92□□□□□ -0.34
SHMT2-220ENST00000555634 VAT1LQ9HCJ6 419 aa12.92□□□□□ -0.34
SHMT2-220ENST00000555634 SH3GLB2Q9NR46 395 aa12.92□□□□□ -0.34
SHMT2-220ENST00000555634 CREBZFQ9NS37 354 aa12.92□□□□□ -0.34
SHMT2-220ENST00000555634 EMILIN3Q9NT22 766 aa12.92□□□□□ -0.34
SHMT2-220ENST00000555634 ATP6V1DQ9Y5K8 247 aa12.92□□□□□ -0.34
SHMT2-220ENST00000555634 V9GY48 417 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-220ENST00000555634 CCL15-CCL14A0A0B4J2E2 113 aa12.91□□□□□ -0.34
SHMT2-220ENST00000555634 PNMA6FA0A0J9YX94 578 aa12.91□□□□□ -0.34
SHMT2-220ENST00000555634 ZBTB5O15062 677 aa12.91□□□□□ -0.34
SHMT2-220ENST00000555634 SLC16A2P36021 539 aa12.91□□□□□ -0.34
SHMT2-220ENST00000555634 APLP1P51693 650 aa12.91□□□□□ -0.34
SHMT2-220ENST00000555634 NAPAP54920 295 aa12.91□□□□□ -0.34
SHMT2-220ENST00000555634 ST3GAL1Q11201 340 aa12.91□□□□□ -0.34
SHMT2-220ENST00000555634 NTRK3Q16288 839 aa12.91□□□□□ -0.34
SHMT2-220ENST00000555634 CCL15Q16663 113 aa12.91□□□□□ -0.34
SHMT2-220ENST00000555634 BTNL9Q6UXG8 535 aa12.91□□□□□ -0.34
SHMT2-220ENST00000555634 RASGRP2Q7LDG7 609 aa12.91□□□□□ -0.34
SHMT2-220ENST00000555634 RASAL3Q86YV0 1011 aa12.91□□□□□ -0.34
SHMT2-220ENST00000555634 MB21D1Q8N884 522 aa12.91□□□□□ -0.34
SHMT2-220ENST00000555634 BICD2Q8TD16 824 aa12.91□□□□□ -0.34
SHMT2-220ENST00000555634 SMCR8Q8TEV9 937 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-220ENST00000555634 CNKSR2Q8WXI2 1034 aa12.91□□□□□ -0.34
SHMT2-220ENST00000555634 PARK7Q99497 189 aaKnown RBP12.91□□□□□ -0.34
SHMT2-220ENST00000555634 AMNQ9BXJ7 453 aa12.91□□□□□ -0.34
SHMT2-220ENST00000555634 UBA5Q9GZZ9 404 aa12.91□□□□□ -0.34
SHMT2-220ENST00000555634 RIOX1Q9H6W3 641 aa12.91□□□□□ -0.34
SHMT2-220ENST00000555634 FAM217BQ9NTX9 383 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-220ENST00000555634 HOXC10Q9NYD6 342 aa12.91□□□□□ -0.34
SHMT2-220ENST00000555634 CHMP5Q9NZZ3 219 aa12.91□□□□□ -0.34
SHMT2-220ENST00000555634 PPP1R9AQ9ULJ8 1098 aa12.91□□□□□ -0.34
SHMT2-220ENST00000555634 PRR12Q9ULL5 1215 aa12.91□□□□□ -0.34
SHMT2-220ENST00000555634 SLC45A1Q9Y2W3 748 aa12.91□□□□□ -0.34
SHMT2-220ENST00000555634 STX6O43752 255 aa12.9□□□□□ -0.34
SHMT2-220ENST00000555634 CTDNEP1O95476 244 aa12.9□□□□□ -0.34
SHMT2-220ENST00000555634 SLC10A3P09131 477 aa12.9□□□□□ -0.34
SHMT2-220ENST00000555634 GNA11P29992 359 aa12.9□□□□□ -0.34
SHMT2-220ENST00000555634 INHBEP58166 350 aa12.9□□□□□ -0.34
SHMT2-220ENST00000555634 MKRN3Q13064 507 aaKnown RBP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms