RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 KIF18AQ8NI77 898 aa13.31□□□□□ -0.28
SHMT2-212ENST00000554467 ZNF592Q92610 1267 aa13.31□□□□□ -0.28
SHMT2-212ENST00000554467 PCDHA5Q9Y5H7 936 aa13.31□□□□□ -0.28
SHMT2-212ENST00000554467 ZBTB7AO95365 584 aa13.31□□□□□ -0.28
SHMT2-212ENST00000554467 TOP1P11387 765 aaKnown RBP13.31□□□□□ -0.28
SHMT2-212ENST00000554467 AFMP43652 599 aa13.31□□□□□ -0.28
SHMT2-212ENST00000554467 INF2Q27J81 1249 aa13.31□□□□□ -0.28
SHMT2-212ENST00000554467 STRIP1Q5VSL9 837 aa13.31□□□□□ -0.28
SHMT2-212ENST00000554467 HHIPL2Q6UWX4 724 aa13.31□□□□□ -0.28
SHMT2-212ENST00000554467 SYMPKQ92797 1274 aaKnown RBP13.31□□□□□ -0.28
SHMT2-212ENST00000554467 C16orf45Q96MC5 204 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-212ENST00000554467 DNAJC18Q9H819 358 aa13.31□□□□□ -0.28
SHMT2-212ENST00000554467 SUGT1Q9Y2Z0 365 aa13.31□□□□□ -0.28
SHMT2-212ENST00000554467 SLC16A2P36021 539 aa13.3□□□□□ -0.28
SHMT2-212ENST00000554467 FAM198AQ9UFP1 575 aa13.3□□□□□ -0.28
SHMT2-212ENST00000554467 CEP131Q9UPN4 1083 aa13.3□□□□□ -0.28
SHMT2-212ENST00000554467 SCAF8Q9UPN6 1271 aaKnown RBP13.3□□□□□ -0.28
SHMT2-212ENST00000554467 ZBTB12Q9Y330 459 aaPredicted RBP13.3□□□□□ -0.28
SHMT2-212ENST00000554467 STXBP3O00186 592 aa13.3□□□□□ -0.28
SHMT2-212ENST00000554467 DPEP1P16444 411 aa13.3□□□□□ -0.28
SHMT2-212ENST00000554467 NAPAP54920 295 aa13.3□□□□□ -0.28
SHMT2-212ENST00000554467 PTPN21Q16825 1174 aa13.3□□□□□ -0.28
SHMT2-212ENST00000554467 TTBK2Q6IQ55 1244 aa13.3□□□□□ -0.28
SHMT2-212ENST00000554467 ST7Q9NRC1 585 aa13.3□□□□□ -0.28
SHMT2-212ENST00000554467 PDHBP11177 359 aa13.3□□□□□ -0.28
SHMT2-212ENST00000554467 CDK11BP21127 795 aaKnown RBP13.3□□□□□ -0.28
SHMT2-212ENST00000554467 SLC20A2Q08357 652 aa13.3□□□□□ -0.28
SHMT2-212ENST00000554467 KCTD1Q719H9 257 aa13.3□□□□□ -0.28
SHMT2-212ENST00000554467 SH3BP5LQ7L8J4 393 aa13.3□□□□□ -0.28
SHMT2-212ENST00000554467 COA7Q96BR5 231 aa13.3□□□□□ -0.28
SHMT2-212ENST00000554467 GDF11O95390 407 aa13.29□□□□□ -0.28
SHMT2-212ENST00000554467 NLRP12P59046 1061 aa13.29□□□□□ -0.28
SHMT2-212ENST00000554467 IL17AQ16552 155 aa13.29□□□□□ -0.28
SHMT2-212ENST00000554467 CCDC178Q5BJE1 867 aa13.29□□□□□ -0.28
SHMT2-212ENST00000554467 KLHL34Q8N239 644 aa13.29□□□□□ -0.28
SHMT2-212ENST00000554467 ZDHHC15Q96MV8 337 aa13.29□□□□□ -0.28
SHMT2-212ENST00000554467 PCDHA4Q9UN74 947 aa13.29□□□□□ -0.28
SHMT2-212ENST00000554467 CLRN2A0PK11 232 aa13.29□□□□□ -0.28
SHMT2-212ENST00000554467 LMOD1P29536 600 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-212ENST00000554467 GNAQP50148 359 aa13.29□□□□□ -0.28
SHMT2-212ENST00000554467 ARID5BQ14865 1188 aa13.29□□□□□ -0.28
SHMT2-212ENST00000554467 PRMT6Q96LA8 375 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-212ENST00000554467 PCDHA6Q9UN73 950 aa13.29□□□□□ -0.28
SHMT2-212ENST00000554467 ATF5Q9Y2D1 282 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-212ENST00000554467 PCDHA8Q9Y5H6 950 aa13.29□□□□□ -0.28
SHMT2-212ENST00000554467 CCDC194A0A1B0GVG4 234 aa13.29□□□□□ -0.28
SHMT2-212ENST00000554467 HLA-DOAP06340 250 aa13.29□□□□□ -0.28
SHMT2-212ENST00000554467 BMP6P22004 513 aa13.29□□□□□ -0.28
SHMT2-212ENST00000554467 PLA2G4DQ86XP0 818 aa13.29□□□□□ -0.28
SHMT2-212ENST00000554467 BARHL2Q9NY43 387 aa13.29□□□□□ -0.28
SHMT2-212ENST00000554467 FAM53CQ9NYF3 392 aa13.29□□□□□ -0.28
SHMT2-212ENST00000554467 BAG6P46379 1132 aa13.28□□□□□ -0.28
SHMT2-212ENST00000554467 CCDC96Q2M329 555 aa13.28□□□□□ -0.28
SHMT2-212ENST00000554467 CCDC144BQ3MJ40 725 aa13.28□□□□□ -0.28
SHMT2-212ENST00000554467 FILIP1Q7Z7B0 1213 aa13.28□□□□□ -0.28
SHMT2-212ENST00000554467 PLIN2Q99541 437 aa13.28□□□□□ -0.28
SHMT2-212ENST00000554467 TMEM260Q9NX78 707 aa13.28□□□□□ -0.28
SHMT2-212ENST00000554467 PP2D1A8MPX8 630 aa13.28□□□□□ -0.28
SHMT2-212ENST00000554467 POSTNQ15063 836 aa13.28□□□□□ -0.28
SHMT2-212ENST00000554467 CFAP100Q494V2 611 aa13.28□□□□□ -0.28
SHMT2-212ENST00000554467 JAKMIP3Q5VZ66 844 aa13.28□□□□□ -0.28
SHMT2-212ENST00000554467 TTLL6Q8N841 843 aa13.28□□□□□ -0.28
SHMT2-212ENST00000554467 RRP36Q96EU6 259 aaKnown RBP13.28□□□□□ -0.28
SHMT2-212ENST00000554467 TIGD1Q96MW7 591 aa13.28□□□□□ -0.28
SHMT2-212ENST00000554467 NAT10Q9H0A0 1025 aaKnown RBP13.28□□□□□ -0.28
SHMT2-212ENST00000554467 BIN2Q9UBW5 565 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-212ENST00000554467 FAM237AA0A1B0GTK4 181 aa13.27□□□□□ -0.28
SHMT2-212ENST00000554467 SMCO2A6NFE2 343 aa13.27□□□□□ -0.28
SHMT2-212ENST00000554467 ERICH4A6NGS2 130 aa13.27□□□□□ -0.28
SHMT2-212ENST00000554467 TCP10L2B9ZVM9 353 aa13.27□□□□□ -0.28
SHMT2-212ENST00000554467 ATP1A3P13637 1013 aa13.27□□□□□ -0.28
SHMT2-212ENST00000554467 CALML3P27482 149 aa13.27□□□□□ -0.28
SHMT2-212ENST00000554467 TMEM60Q9H2L4 133 aa13.27□□□□□ -0.28
SHMT2-212ENST00000554467 SEC63Q9UGP8 760 aaKnown RBP13.27□□□□□ -0.28
SHMT2-212ENST00000554467 ACTN4O43707 911 aaKnown RBP13.27□□□□□ -0.28
SHMT2-212ENST00000554467 TTLL1O95922 423 aa13.27□□□□□ -0.28
SHMT2-212ENST00000554467 MDM2Q00987 491 aaPredicted RBP13.27□□□□□ -0.28
SHMT2-212ENST00000554467 LARGE2Q8N3Y3 721 aa13.27□□□□□ -0.28
SHMT2-212ENST00000554467 UIMC1Q96RL1 719 aa13.27□□□□□ -0.28
SHMT2-212ENST00000554467 SNAP25P60880 206 aa13.27□□□□□ -0.29
SHMT2-212ENST00000554467 SYCP1Q15431 976 aa13.27□□□□□ -0.29
SHMT2-212ENST00000554467 TUBE1Q9UJT0 475 aa13.27□□□□□ -0.29
SHMT2-212ENST00000554467 FOCADQ5VW36 1801 aa13.27□□□□□ -0.29
SHMT2-212ENST00000554467 MYH8P13535 1937 aa13.27□□□□□ -0.29
SHMT2-212ENST00000554467 COBLO75128 1261 aa13.26□□□□□ -0.29
SHMT2-212ENST00000554467 ATP2C1P98194 919 aaPredicted RBP13.26□□□□□ -0.29
SHMT2-212ENST00000554467 KMT5BQ4FZB7 885 aa13.26□□□□□ -0.29
SHMT2-212ENST00000554467 TRMT44Q8IYL2 757 aaKnown RBP13.26□□□□□ -0.29
SHMT2-212ENST00000554467 TRIM34Q9BYJ4 488 aa13.26□□□□□ -0.29
SHMT2-212ENST00000554467 SMC2O95347 1197 aa13.26□□□□□ -0.29
SHMT2-212ENST00000554467 CAVIN2O95810 425 aa13.26□□□□□ -0.29
SHMT2-212ENST00000554467 KCNA3P22001 575 aa13.26□□□□□ -0.29
SHMT2-212ENST00000554467 JAG1P78504 1218 aa13.26□□□□□ -0.29
SHMT2-212ENST00000554467 SEPT2Q15019 361 aa13.26□□□□□ -0.29
SHMT2-212ENST00000554467 LETM2Q2VYF4 491 aa13.26□□□□□ -0.29
SHMT2-212ENST00000554467 SPZ1Q9BXG8 430 aa13.26□□□□□ -0.29
SHMT2-212ENST00000554467 BLZF1Q9H2G9 400 aa13.26□□□□□ -0.29
SHMT2-212ENST00000554467 MAN1B1Q9UKM7 699 aa13.26□□□□□ -0.29
SHMT2-212ENST00000554467 PSMD14O00487 310 aa13.26□□□□□ -0.29
SHMT2-212ENST00000554467 TAL1P17542 331 aaPredicted RBP13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms