RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 B4E1Z4 1266 aa16.93■□□□□ 0.3
SHMT2-208ENST00000553868 ORC4O43929 436 aa16.93■□□□□ 0.3
SHMT2-208ENST00000553868 CTNND1O60716 968 aaKnown RBP16.93■□□□□ 0.3
SHMT2-208ENST00000553868 HLA-DOAP06340 250 aa16.93■□□□□ 0.3
SHMT2-208ENST00000553868 FGRP09769 529 aa16.93■□□□□ 0.3
SHMT2-208ENST00000553868 DNAJB2P25686 324 aa16.93■□□□□ 0.3
SHMT2-208ENST00000553868 MRPS5P82675 430 aaKnown RBP16.93■□□□□ 0.3
SHMT2-208ENST00000553868 PICALMQ13492 652 aa16.93■□□□□ 0.3
SHMT2-208ENST00000553868 RRP12Q5JTH9 1297 aaKnown RBP16.93■□□□□ 0.3
SHMT2-208ENST00000553868 Q6ZUG5 572 aa16.93■□□□□ 0.3
SHMT2-208ENST00000553868 ZSCAN29Q8IWY8 852 aaPredicted RBP16.93■□□□□ 0.3
SHMT2-208ENST00000553868 PROCA1Q8NCQ7 364 aaPredicted RBP16.93■□□□□ 0.3
SHMT2-208ENST00000553868 TRIM43Q96BQ3 446 aaPredicted RBP16.93■□□□□ 0.3
SHMT2-208ENST00000553868 SNX27Q96L92 541 aa16.93■□□□□ 0.3
SHMT2-208ENST00000553868 OSBPL5Q9H0X9 879 aaPredicted RBP16.93■□□□□ 0.3
SHMT2-208ENST00000553868 DHX36Q9H2U1 1008 aaKnown RBP16.93■□□□□ 0.3
SHMT2-208ENST00000553868 ZNF576Q9H609 170 aa16.93■□□□□ 0.3
SHMT2-208ENST00000553868 MORF4L1Q9UBU8 362 aa16.93■□□□□ 0.3
SHMT2-208ENST00000553868 SAP30BPQ9UHR5 308 aaKnown RBP16.93■□□□□ 0.3
SHMT2-208ENST00000553868 HCN4Q9Y3Q4 1203 aa16.93■□□□□ 0.3
SHMT2-208ENST00000553868 RLFQ13129 1914 aa16.93■□□□□ 0.3
SHMT2-208ENST00000553868 NEDD4P46934 1319 aa16.93■□□□□ 0.3
SHMT2-208ENST00000553868 CYP2D7A0A087X1C5 515 aa16.92■□□□□ 0.3
SHMT2-208ENST00000553868 ERICH2A1L162 156 aa16.92■□□□□ 0.3
SHMT2-208ENST00000553868 FAM196BA6NMK8 535 aa16.92■□□□□ 0.3
SHMT2-208ENST00000553868 ENTPD3O75355 529 aa16.92■□□□□ 0.3
SHMT2-208ENST00000553868 ITGB8P26012 769 aa16.92■□□□□ 0.3
SHMT2-208ENST00000553868 TRIM60Q495X7 471 aa16.92■□□□□ 0.3
SHMT2-208ENST00000553868 NOL8Q76FK4 1167 aaKnown RBP16.92■□□□□ 0.3
SHMT2-208ENST00000553868 SOCS4Q8WXH5 440 aa16.92■□□□□ 0.3
SHMT2-208ENST00000553868 USP6NLQ92738 828 aa16.92■□□□□ 0.3
SHMT2-208ENST00000553868 AGXT2Q9BYV1 514 aa16.92■□□□□ 0.3
SHMT2-208ENST00000553868 MUC6Q6W4X9 2439 aa16.92■□□□□ 0.3
SHMT2-208ENST00000553868 KDM4AO75164 1064 aa16.91■□□□□ 0.3
SHMT2-208ENST00000553868 CYP2D6P10635 497 aa16.91■□□□□ 0.3
SHMT2-208ENST00000553868 TOB2Q14106 344 aaPredicted RBP16.91■□□□□ 0.3
SHMT2-208ENST00000553868 GJC2Q5T442 439 aaPredicted RBP16.91■□□□□ 0.3
SHMT2-208ENST00000553868 INTS4Q96HW7 963 aaKnown RBP16.91■□□□□ 0.3
SHMT2-208ENST00000553868 TCEANC2Q96MN5 208 aa16.91■□□□□ 0.3
SHMT2-208ENST00000553868 UBAC1Q9BSL1 405 aa16.91■□□□□ 0.3
SHMT2-208ENST00000553868 EPHX3Q9H6B9 360 aa16.91■□□□□ 0.3
SHMT2-208ENST00000553868 MKNK2Q9HBH9 465 aa16.91■□□□□ 0.3
SHMT2-208ENST00000553868 PDLIM7Q9NR12 457 aa16.91■□□□□ 0.3
SHMT2-208ENST00000553868 FLRT1Q9NZU1 646 aa16.91■□□□□ 0.3
SHMT2-208ENST00000553868 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.91■□□□□ 0.3
SHMT2-208ENST00000553868 REV3LO60673 3130 aa16.91■□□□□ 0.3
SHMT2-208ENST00000553868 CNGA1P29973 690 aa16.9■□□□□ 0.3
SHMT2-208ENST00000553868 MAP3K10Q02779 954 aa16.9■□□□□ 0.3
SHMT2-208ENST00000553868 CUL4AQ13619 759 aa16.9■□□□□ 0.3
SHMT2-208ENST00000553868 Q3C1V9 767 aa16.9■□□□□ 0.3
SHMT2-208ENST00000553868 CCDC178Q5BJE1 867 aa16.9■□□□□ 0.3
SHMT2-208ENST00000553868 SLC39A5Q6ZMH5 540 aa16.9■□□□□ 0.3
SHMT2-208ENST00000553868 IQCA1Q86XH1 822 aa16.9■□□□□ 0.3
SHMT2-208ENST00000553868 TMTC2Q8N394 836 aa16.9■□□□□ 0.3
SHMT2-208ENST00000553868 BRF1Q92994 677 aa16.9■□□□□ 0.3
SHMT2-208ENST00000553868 PORCNQ9H237 461 aa16.9■□□□□ 0.3
SHMT2-208ENST00000553868 PRDM12Q9H4Q4 367 aa16.9■□□□□ 0.3
SHMT2-208ENST00000553868 ZSWIM5Q9P217 1185 aa16.9■□□□□ 0.3
SHMT2-208ENST00000553868 DDX20Q9UHI6 824 aaKnown RBP16.9■□□□□ 0.3
SHMT2-208ENST00000553868 ARIH1Q9Y4X5 557 aaPredicted RBP16.9■□□□□ 0.3
SHMT2-208ENST00000553868 FOCADQ5VW36 1801 aa16.89■□□□□ 0.29
SHMT2-208ENST00000553868 DNM1LO00429 736 aa16.89■□□□□ 0.29
SHMT2-208ENST00000553868 IFIT3O14879 490 aaKnown RBP16.89■□□□□ 0.29
SHMT2-208ENST00000553868 RANBP6O60518 1105 aaKnown RBP16.89■□□□□ 0.29
SHMT2-208ENST00000553868 RGS2P41220 211 aa16.89■□□□□ 0.29
SHMT2-208ENST00000553868 ANTXR2P58335 489 aa16.89■□□□□ 0.29
SHMT2-208ENST00000553868 TMEM67Q5HYA8 995 aa16.89■□□□□ 0.29
SHMT2-208ENST00000553868 MORN1Q5T089 497 aa16.89■□□□□ 0.29
SHMT2-208ENST00000553868 C16orf86Q6ZW13 317 aa16.89■□□□□ 0.29
SHMT2-208ENST00000553868 CYB5R4Q7L1T6 521 aa16.89■□□□□ 0.29
SHMT2-208ENST00000553868 TRMT44Q8IYL2 757 aaKnown RBP16.89■□□□□ 0.29
SHMT2-208ENST00000553868 ZNF444Q8N0Y2 327 aaPredicted RBP16.89■□□□□ 0.29
SHMT2-208ENST00000553868 STK11IPQ8N1F8 1099 aa16.89■□□□□ 0.29
SHMT2-208ENST00000553868 P2RX7Q99572 595 aaKnown RBP16.89■□□□□ 0.29
SHMT2-208ENST00000553868 CWC22Q9HCG8 908 aaKnown RBP16.89■□□□□ 0.29
SHMT2-208ENST00000553868 DDX4Q9NQI0 724 aaKnown RBP16.89■□□□□ 0.29
SHMT2-208ENST00000553868 SWAP70Q9UH65 585 aa16.89■□□□□ 0.29
SHMT2-208ENST00000553868 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.89■□□□□ 0.29
SHMT2-208ENST00000553868 BAZ2AQ9UIF9 1905 aaKnown RBP16.89■□□□□ 0.29
SHMT2-208ENST00000553868 SH2B2O14492 632 aaPredicted RBP16.88■□□□□ 0.29
SHMT2-208ENST00000553868 LIFRP42702 1097 aa16.88■□□□□ 0.29
SHMT2-208ENST00000553868 PLCD1P51178 756 aa16.88■□□□□ 0.29
SHMT2-208ENST00000553868 PABPC4Q13310 644 aaKnown RBP eCLIP16.88■□□□□ 0.29
SHMT2-208ENST00000553868 ADGRE1Q14246 886 aa16.88■□□□□ 0.29
SHMT2-208ENST00000553868 CHST3Q7LGC8 479 aa16.88■□□□□ 0.29
SHMT2-208ENST00000553868 GPR142Q7Z601 462 aa16.88■□□□□ 0.29
SHMT2-208ENST00000553868 ZNF280CQ8ND82 737 aa16.88■□□□□ 0.29
SHMT2-208ENST00000553868 GPRC5AQ8NFJ5 357 aa16.88■□□□□ 0.29
SHMT2-208ENST00000553868 LPAR1Q92633 364 aa16.88■□□□□ 0.29
SHMT2-208ENST00000553868 TIFAQ96CG3 184 aa16.88■□□□□ 0.29
SHMT2-208ENST00000553868 ZNF274Q96GC6 653 aaPredicted RBP16.88■□□□□ 0.29
SHMT2-208ENST00000553868 GAS2L1Q99501 681 aaPredicted RBP16.88■□□□□ 0.29
SHMT2-208ENST00000553868 APBA2Q99767 749 aa16.88■□□□□ 0.29
SHMT2-208ENST00000553868 TRIM34Q9BYJ4 488 aa16.88■□□□□ 0.29
SHMT2-208ENST00000553868 LRRC2Q9BYS8 371 aa16.88■□□□□ 0.29
SHMT2-208ENST00000553868 EHD4Q9H223 541 aa16.88■□□□□ 0.29
SHMT2-208ENST00000553868 TPCN1Q9ULQ1 816 aa16.88■□□□□ 0.29
SHMT2-208ENST00000553868 CDK5RAP2Q96SN8 1893 aa16.87■□□□□ 0.29
SHMT2-208ENST00000553868 TSPY2A6NKD2 308 aa16.87■□□□□ 0.29
SHMT2-208ENST00000553868 EVCP57679 992 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms