RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 HDAC1Q13547 482 aaPredicted RBP15.14■□□□□ 0.01
LINC00643-202ENST00000553426 PRAMEF19Q5SWL8 479 aa15.14■□□□□ 0.01
LINC00643-202ENST00000553426 ANO1Q5XXA6 986 aa15.14■□□□□ 0.01
LINC00643-202ENST00000553426 TDHQ8IZJ6 230 aa15.14■□□□□ 0.01
LINC00643-202ENST00000553426 CPXCR1Q8N123 301 aa15.14■□□□□ 0.01
LINC00643-202ENST00000553426 GMCL1P1Q8NEA9 526 aa15.14■□□□□ 0.01
LINC00643-202ENST00000553426 REPS2Q8NFH8 660 aa15.14■□□□□ 0.01
LINC00643-202ENST00000553426 KIFC2Q96AC6 838 aa15.14■□□□□ 0.01
LINC00643-202ENST00000553426 DNAH12Q6ZR08 3092 aa15.14■□□□□ 0.01
LINC00643-202ENST00000553426 TSPY2A6NKD2 308 aa15.13■□□□□ 0.01
LINC00643-202ENST00000553426 ATP2A1O14983 1001 aa15.13■□□□□ 0.01
LINC00643-202ENST00000553426 BMP3P12645 472 aa15.13■□□□□ 0.01
LINC00643-202ENST00000553426 PDE1AP54750 535 aa15.13■□□□□ 0.01
LINC00643-202ENST00000553426 ZNF792Q3KQV3 632 aa15.13■□□□□ 0.01
LINC00643-202ENST00000553426 FAM47AQ5JRC9 791 aa15.13■□□□□ 0.01
LINC00643-202ENST00000553426 SLFN13Q68D06 897 aa15.13■□□□□ 0.01
LINC00643-202ENST00000553426 TICAM2Q86XR7 235 aa15.13■□□□□ 0.01
LINC00643-202ENST00000553426 LRRC47Q8N1G4 583 aaKnown RBP15.13■□□□□ 0.01
LINC00643-202ENST00000553426 MSL3Q8N5Y2 521 aaKnown RBP15.13■□□□□ 0.01
LINC00643-202ENST00000553426 YTHDC1Q96MU7 727 aaKnown RBP15.13■□□□□ 0.01
LINC00643-202ENST00000553426 HELLSQ9NRZ9 838 aa15.13■□□□□ 0.01
LINC00643-202ENST00000553426 FBXO40Q9UH90 709 aa15.13■□□□□ 0.01
LINC00643-202ENST00000553426 GREB1LQ9C091 1923 aaPredicted RBP15.13■□□□□ 0.01
LINC00643-202ENST00000553426 PARP14Q460N5 1801 aa15.13■□□□□ 0.01
LINC00643-202ENST00000553426 PLIN4Q96Q06 1357 aa15.12■□□□□ 0.01
LINC00643-202ENST00000553426 OAZ1P54368 228 aa15.12■□□□□ 0.01
LINC00643-202ENST00000553426 RTP1P59025 263 aa15.12■□□□□ 0.01
LINC00643-202ENST00000553426 IKQ13123 557 aaPredicted RBP15.12■□□□□ 0.01
LINC00643-202ENST00000553426 RNF180Q86T96 592 aa15.12■□□□□ 0.01
LINC00643-202ENST00000553426 ANKRD35Q8N283 1001 aa15.12■□□□□ 0.01
LINC00643-202ENST00000553426 CHURC1Q8WUH1 139 aa15.12■□□□□ 0.01
LINC00643-202ENST00000553426 RWDD1Q9H446 243 aaPredicted RBP15.12■□□□□ 0.01
LINC00643-202ENST00000553426 SLC38A10Q9HBR0 1119 aa15.12■□□□□ 0.01
LINC00643-202ENST00000553426 STX8Q9UNK0 236 aa15.12■□□□□ 0.01
LINC00643-202ENST00000553426 ATP11BQ9Y2G3 1177 aa15.12■□□□□ 0.01
LINC00643-202ENST00000553426 COL11A1P12107 1806 aaPredicted RBP15.12■□□□□ 0.01
LINC00643-202ENST00000553426 SALL3Q9BXA9 1300 aa15.12■□□□□ 0.01
LINC00643-202ENST00000553426 UNC80Q8N2C7 3258 aa15.11■□□□□ 0.01
LINC00643-202ENST00000553426 FRMPD3Q5JV73 1810 aa15.11■□□□□ 0.01
LINC00643-202ENST00000553426 TMEM232C9JQI7 657 aa15.11■□□□□ 0.01
LINC00643-202ENST00000553426 AKR1A1P14550 325 aa15.11■□□□□ 0.01
LINC00643-202ENST00000553426 SLC1A4P43007 532 aa15.11■□□□□ 0.01
LINC00643-202ENST00000553426 STAT2P52630 851 aa15.11■□□□□ 0.01
LINC00643-202ENST00000553426 MDM2Q00987 491 aaPredicted RBP15.11■□□□□ 0.01
LINC00643-202ENST00000553426 LRRC41Q15345 812 aa15.11■□□□□ 0.01
LINC00643-202ENST00000553426 CCDC129Q6ZRS4 1044 aa15.11■□□□□ 0.01
LINC00643-202ENST00000553426 CHST13Q8NET6 341 aa15.11■□□□□ 0.01
LINC00643-202ENST00000553426 RAVER2Q9HCJ3 691 aaKnown RBP15.11■□□□□ 0.01
LINC00643-202ENST00000553426 XPNPEP3Q9NQH7 507 aa15.11■□□□□ 0.01
LINC00643-202ENST00000553426 TRIM6-TRIM34B2RNG4 842 aa15.1■□□□□ 0.01
LINC00643-202ENST00000553426 RANBP6O60518 1105 aaKnown RBP15.1■□□□□ 0.01
LINC00643-202ENST00000553426 ADCYAP1R1P41586 468 aa15.1■□□□□ 0.01
LINC00643-202ENST00000553426 CTDSPL2Q05D32 466 aa15.1■□□□□ 0.01
LINC00643-202ENST00000553426 LRIT3Q3SXY7 679 aa15.1■□□□□ 0.01
LINC00643-202ENST00000553426 GPR153Q6NV75 609 aa15.1■□□□□ 0.01
LINC00643-202ENST00000553426 SLC39A5Q6ZMH5 540 aa15.1■□□□□ 0.01
LINC00643-202ENST00000553426 FAM160B2Q86V87 743 aa15.1■□□□□ 0.01
LINC00643-202ENST00000553426 GMCL1Q96IK5 515 aa15.1■□□□□ 0.01
LINC00643-202ENST00000553426 TOMM22Q9NS69 142 aa15.1■□□□□ 0.01
LINC00643-202ENST00000553426 RIPK3Q9Y572 518 aa15.1■□□□□ 0.01
LINC00643-202ENST00000553426 SYNGAP1Q96PV0 1343 aa15.1■□□□□ 0.01
LINC00643-202ENST00000553426 ZNFX1Q9P2E3 1918 aaKnown RBP15.09■□□□□ 0.01
LINC00643-202ENST00000553426 MYH4Q9Y623 1939 aa15.09■□□□□ 0.01
LINC00643-202ENST00000553426 MCCP23508 829 aa15.09■□□□□ 0.01
LINC00643-202ENST00000553426 ALX1Q15699 326 aa15.09■□□□□ 0.01
LINC00643-202ENST00000553426 MCMDC2Q4G0Z9 681 aa15.09■□□□□ 0.01
LINC00643-202ENST00000553426 ZNF467Q7Z7K2 595 aaPredicted RBP15.09■□□□□ 0.01
LINC00643-202ENST00000553426 STAG1Q8WVM7 1258 aa15.09■□□□□ 0.01
LINC00643-202ENST00000553426 FERMT2Q96AC1 680 aa15.09■□□□□ 0.01
LINC00643-202ENST00000553426 ANAPC4Q9UJX5 808 aa15.09■□□□□ 0.01
LINC00643-202ENST00000553426 FAM184BQ9ULE4 1060 aa15.09■□□□□ 0.01
LINC00643-202ENST00000553426 ZNF865P0CJ78 1059 aaPredicted RBP15.08■□□□□ 0
LINC00643-202ENST00000553426 MFAP1P55081 439 aaKnown RBP15.08■□□□□ 0
LINC00643-202ENST00000553426 MAMDC4Q6UXC1 1216 aa15.08■□□□□ 0
LINC00643-202ENST00000553426 Q7L0L9 218 aa15.08■□□□□ 0
LINC00643-202ENST00000553426 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.08■□□□□ 0
LINC00643-202ENST00000553426 LNPKQ9C0E8 428 aa15.08■□□□□ 0
LINC00643-202ENST00000553426 ACAD9Q9H845 621 aa15.08■□□□□ 0
LINC00643-202ENST00000553426 PRDM5Q9NQX1 630 aaPredicted RBP15.08■□□□□ 0
LINC00643-202ENST00000553426 HOMER2Q9NSB8 354 aa15.08■□□□□ 0
LINC00643-202ENST00000553426 ZHX1Q9UKY1 873 aaPredicted RBP15.08■□□□□ 0
LINC00643-202ENST00000553426 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.08■□□□□ 0
LINC00643-202ENST00000553426 DNAJC25-GNG10A0A024R161 153 aa15.07■□□□□ 0
LINC00643-202ENST00000553426 ORC4O43929 436 aa15.07■□□□□ 0
LINC00643-202ENST00000553426 PLA2G6O60733 806 aa15.07■□□□□ 0
LINC00643-202ENST00000553426 PGK1P00558 417 aa15.07■□□□□ 0
LINC00643-202ENST00000553426 TAL1P17542 331 aaPredicted RBP15.07■□□□□ 0
LINC00643-202ENST00000553426 TKFCQ3LXA3 575 aa15.07■□□□□ 0
LINC00643-202ENST00000553426 VPS53Q5VIR6 699 aa15.07■□□□□ 0
LINC00643-202ENST00000553426 C1orf53Q5VUE5 145 aa15.07■□□□□ 0
LINC00643-202ENST00000553426 RCSD1Q6JBY9 416 aa15.07■□□□□ 0
LINC00643-202ENST00000553426 B4GALNT3Q6L9W6 998 aa15.07■□□□□ 0
LINC00643-202ENST00000553426 RILPL2Q969X0 211 aa15.07■□□□□ 0
LINC00643-202ENST00000553426 ABHD16BQ9H3Z7 469 aa15.07■□□□□ 0
LINC00643-202ENST00000553426 SPC25Q9HBM1 224 aa15.07■□□□□ 0
LINC00643-202ENST00000553426 PHF24Q9UPV7 400 aa15.07■□□□□ 0
LINC00643-202ENST00000553426 PLXNA1Q9UIW2 1896 aa15.06■□□□□ 0
LINC00643-202ENST00000553426 POTEB2H3BUK9 544 aa15.06■□□□□ 0
LINC00643-202ENST00000553426 FOXP2O15409 715 aa15.06■□□□□ 0
LINC00643-202ENST00000553426 SNAI1O95863 264 aaPredicted RBP15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms