RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-208ENST00000553289 MIS12Q9H081 205 aa12.71□□□□□ -0.37
SYNE2-208ENST00000553289 DDX41Q9UJV9 622 aaKnown RBP12.71□□□□□ -0.37
SYNE2-208ENST00000553289 TRPC6Q9Y210 931 aa12.71□□□□□ -0.37
SYNE2-208ENST00000553289 RPN1P04843 607 aaKnown RBP12.71□□□□□ -0.37
SYNE2-208ENST00000553289 ADD1P35611 737 aaKnown RBP12.71□□□□□ -0.37
SYNE2-208ENST00000553289 RASSF2P50749 326 aa12.71□□□□□ -0.37
SYNE2-208ENST00000553289 ZYXQ15942 572 aaKnown RBP12.71□□□□□ -0.37
SYNE2-208ENST00000553289 CCDC89Q8N998 374 aa12.71□□□□□ -0.37
SYNE2-208ENST00000553289 TDRD7Q8NHU6 1098 aaKnown RBP12.71□□□□□ -0.37
SYNE2-208ENST00000553289 U2AF1L4Q8WU68 220 aaKnown RBP12.71□□□□□ -0.37
SYNE2-208ENST00000553289 ATG3Q9NT62 314 aa12.71□□□□□ -0.37
SYNE2-208ENST00000553289 hCG_1642624A0A1W2PR95 340 aa12.71□□□□□ -0.37
SYNE2-208ENST00000553289 KLRF2D3W0D1 207 aa12.71□□□□□ -0.37
SYNE2-208ENST00000553289 GIPC1O14908 333 aa12.71□□□□□ -0.37
SYNE2-208ENST00000553289 RNF40O75150 1001 aa12.71□□□□□ -0.37
SYNE2-208ENST00000553289 PRPF6O94906 941 aaKnown RBP12.71□□□□□ -0.37
SYNE2-208ENST00000553289 KRT15P19012 456 aa12.71□□□□□ -0.37
SYNE2-208ENST00000553289 NIM1KQ8IY84 436 aa12.71□□□□□ -0.37
SYNE2-208ENST00000553289 HACE1Q8IYU2 909 aa12.71□□□□□ -0.37
SYNE2-208ENST00000553289 CPXCR1Q8N123 301 aa12.71□□□□□ -0.37
SYNE2-208ENST00000553289 RNF26Q9BY78 433 aaPredicted RBP12.71□□□□□ -0.37
SYNE2-208ENST00000553289 POLR3EQ9NVU0 708 aa12.71□□□□□ -0.37
SYNE2-208ENST00000553289 USTQ9Y2C2 406 aa12.71□□□□□ -0.37
SYNE2-208ENST00000553289 MAGI2Q86UL8 1455 aa12.71□□□□□ -0.38
SYNE2-208ENST00000553289 CEP170Q5SW79 1584 aa12.71□□□□□ -0.38
SYNE2-208ENST00000553289 GEN1Q17RS7 908 aa12.71□□□□□ -0.38
SYNE2-208ENST00000553289 MAEAQ7L5Y9 396 aa12.71□□□□□ -0.38
SYNE2-208ENST00000553289 MCF2L2Q86YR7 1114 aa12.71□□□□□ -0.38
SYNE2-208ENST00000553289 NSMCE1Q8WV22 266 aa12.71□□□□□ -0.38
SYNE2-208ENST00000553289 ATP2A3Q93084 1043 aa12.71□□□□□ -0.38
SYNE2-208ENST00000553289 BCL2L12Q9HB09 334 aa12.71□□□□□ -0.38
SYNE2-208ENST00000553289 PANK4Q9NVE7 773 aa12.71□□□□□ -0.38
SYNE2-208ENST00000553289 MYO1AQ9UBC5 1043 aa12.71□□□□□ -0.38
SYNE2-208ENST00000553289 PDE8BO95263 885 aa12.7□□□□□ -0.38
SYNE2-208ENST00000553289 NT5C2P49902 561 aa12.7□□□□□ -0.38
SYNE2-208ENST00000553289 SLC39A14Q15043 492 aa12.7□□□□□ -0.38
SYNE2-208ENST00000553289 DEPTORQ8TB45 409 aa12.7□□□□□ -0.38
SYNE2-208ENST00000553289 RUNDC3BQ96NL0 473 aa12.7□□□□□ -0.38
SYNE2-208ENST00000553289 HOMER3Q9NSC5 361 aa12.7□□□□□ -0.38
SYNE2-208ENST00000553289 SLAIN2Q9P270 581 aa12.7□□□□□ -0.38
SYNE2-208ENST00000553289 IKBKBO14920 756 aa12.7□□□□□ -0.38
SYNE2-208ENST00000553289 TNNI1P19237 187 aa12.7□□□□□ -0.38
SYNE2-208ENST00000553289 ARHGAP44Q17R89 818 aa12.7□□□□□ -0.38
SYNE2-208ENST00000553289 SLC17A8Q8NDX2 589 aa12.7□□□□□ -0.38
SYNE2-208ENST00000553289 AK8Q96MA6 479 aa12.7□□□□□ -0.38
SYNE2-208ENST00000553289 BCAP29Q9UHQ4 241 aa12.7□□□□□ -0.38
SYNE2-208ENST00000553289 NOD1Q9Y239 953 aa12.7□□□□□ -0.38
SYNE2-208ENST00000553289 BZW2Q9Y6E2 419 aaKnown RBP12.7□□□□□ -0.38
SYNE2-208ENST00000553289 IGSF1Q8N6C5 1336 aa12.7□□□□□ -0.38
SYNE2-208ENST00000553289 RGS16O15492 202 aaPredicted RBP12.7□□□□□ -0.38
SYNE2-208ENST00000553289 IGSF3O75054 1194 aa12.7□□□□□ -0.38
SYNE2-208ENST00000553289 TECP42680 631 aa12.7□□□□□ -0.38
SYNE2-208ENST00000553289 TTC16Q8NEE8 873 aa12.7□□□□□ -0.38
SYNE2-208ENST00000553289 GPT2Q8TD30 523 aa12.7□□□□□ -0.38
SYNE2-208ENST00000553289 MED4Q9NPJ6 270 aa12.7□□□□□ -0.38
SYNE2-208ENST00000553289 LARSQ9P2J5 1176 aaKnown RBP12.7□□□□□ -0.38
SYNE2-208ENST00000553289 hCG_1984214I3L0E3 225 aa12.7□□□□□ -0.38
SYNE2-208ENST00000553289 KCNQ3O43525 872 aa12.7□□□□□ -0.38
SYNE2-208ENST00000553289 POLR2MP0CAP2 368 aa12.7□□□□□ -0.38
SYNE2-208ENST00000553289 PHBP35232 272 aa12.7□□□□□ -0.38
SYNE2-208ENST00000553289 ERVK-7P63135 1459 aa12.7□□□□□ -0.38
SYNE2-208ENST00000553289 SCRN1Q12765 414 aa12.7□□□□□ -0.38
SYNE2-208ENST00000553289 SDCCAG8Q86SQ7 713 aaPredicted RBP12.7□□□□□ -0.38
SYNE2-208ENST00000553289 ZNF713Q8N859 430 aaPredicted RBP12.7□□□□□ -0.38
SYNE2-208ENST00000553289 BBOF1Q8ND07 529 aa12.7□□□□□ -0.38
SYNE2-208ENST00000553289 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.7□□□□□ -0.38
SYNE2-208ENST00000553289 BTBD18B2RXH4 712 aa12.69□□□□□ -0.38
SYNE2-208ENST00000553289 MYL1P05976 194 aa12.69□□□□□ -0.38
SYNE2-208ENST00000553289 GTF2IP78347 998 aa12.69□□□□□ -0.38
SYNE2-208ENST00000553289 SARNPP82979 210 aaKnown RBP12.69□□□□□ -0.38
SYNE2-208ENST00000553289 RAD51AP2Q09MP3 1159 aa12.69□□□□□ -0.38
SYNE2-208ENST00000553289 TCP10Q12799 353 aa12.69□□□□□ -0.38
SYNE2-208ENST00000553289 MAP7Q14244 749 aa12.69□□□□□ -0.38
SYNE2-208ENST00000553289 CARD10Q9BWT7 1032 aa12.69□□□□□ -0.38
SYNE2-208ENST00000553289 TYW1Q9NV66 732 aaKnown RBP12.69□□□□□ -0.38
SYNE2-208ENST00000553289 SOS2Q07890 1332 aaPredicted RBP12.69□□□□□ -0.38
SYNE2-208ENST00000553289 NDUFA8P51970 172 aa12.69□□□□□ -0.38
SYNE2-208ENST00000553289 AOC3Q16853 763 aa12.69□□□□□ -0.38
SYNE2-208ENST00000553289 TTLL7Q6ZT98 887 aa12.69□□□□□ -0.38
SYNE2-208ENST00000553289 RETREG2Q8NC44 543 aa12.69□□□□□ -0.38
SYNE2-208ENST00000553289 PSMB7Q99436 277 aa12.69□□□□□ -0.38
SYNE2-208ENST00000553289 VCXQ9H320 206 aa12.69□□□□□ -0.38
SYNE2-208ENST00000553289 FANCLQ9NW38 375 aa12.69□□□□□ -0.38
SYNE2-208ENST00000553289 DDX25Q9UHL0 483 aaKnown RBP12.69□□□□□ -0.38
SYNE2-208ENST00000553289 PLEKHG1Q9ULL1 1385 aa12.69□□□□□ -0.38
SYNE2-208ENST00000553289 MYO5CQ9NQX4 1742 aa12.69□□□□□ -0.38
SYNE2-208ENST00000553289 CTNNA1P35221 906 aaKnown RBP12.69□□□□□ -0.38
SYNE2-208ENST00000553289 PCK1P35558 622 aa12.69□□□□□ -0.38
SYNE2-208ENST00000553289 FAM26FQ5R3K3 315 aa12.69□□□□□ -0.38
SYNE2-208ENST00000553289 FBXO11Q86XK2 927 aa12.69□□□□□ -0.38
SYNE2-208ENST00000553289 RIC8AQ9NPQ8 531 aa12.69□□□□□ -0.38
SYNE2-208ENST00000553289 RAB20Q9NX57 234 aa12.69□□□□□ -0.38
SYNE2-208ENST00000553289 KDM5CP41229 1560 aa12.69□□□□□ -0.38
SYNE2-208ENST00000553289 ZNF131P52739 623 aa12.69□□□□□ -0.38
SYNE2-208ENST00000553289 CUL4AQ13619 759 aa12.69□□□□□ -0.38
SYNE2-208ENST00000553289 HADHQ16836 314 aaKnown RBP12.69□□□□□ -0.38
SYNE2-208ENST00000553289 ZBTB8OSQ8IWT0 167 aa12.69□□□□□ -0.38
SYNE2-208ENST00000553289 TSC1Q92574 1164 aa12.69□□□□□ -0.38
SYNE2-208ENST00000553289 CCDC17Q96LX7 622 aa12.69□□□□□ -0.38
SYNE2-208ENST00000553289 TEKT3Q9BXF9 490 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms