RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 TBC1D22AQ8WUA7 517 aa20.41■□□□□ 0.86
VIM-209ENST00000544301 CRAMP1Q96RY5 1269 aa20.41■□□□□ 0.86
VIM-209ENST00000544301 SPZ1Q9BXG8 430 aa20.41■□□□□ 0.86
VIM-209ENST00000544301 L2HGDHQ9H9P8 463 aa20.41■□□□□ 0.86
VIM-209ENST00000544301 TEX33O43247 280 aa20.41■□□□□ 0.86
VIM-209ENST00000544301 STX10O60499 249 aa20.41■□□□□ 0.86
VIM-209ENST00000544301 TXLNAP40222 546 aa20.41■□□□□ 0.86
VIM-209ENST00000544301 ETF1P62495 437 aaKnown RBP20.41■□□□□ 0.86
VIM-209ENST00000544301 INF2Q27J81 1249 aa20.41■□□□□ 0.86
VIM-209ENST00000544301 SLC27A3Q5K4L6 730 aa20.41■□□□□ 0.86
VIM-209ENST00000544301 FAM177A1Q8N128 213 aaPredicted RBP20.41■□□□□ 0.86
VIM-209ENST00000544301 ERO1AQ96HE7 468 aa20.41■□□□□ 0.86
VIM-209ENST00000544301 CTNND2Q9UQB3 1225 aa20.41■□□□□ 0.86
VIM-209ENST00000544301 SLU7O95391 586 aaKnown RBP20.4■□□□□ 0.86
VIM-209ENST00000544301 TRIM65Q6PJ69 517 aa20.4■□□□□ 0.86
VIM-209ENST00000544301 DTHD1Q6ZMT9 781 aa20.4■□□□□ 0.86
VIM-209ENST00000544301 UBE2Q2Q8WVN8 375 aa20.4■□□□□ 0.86
VIM-209ENST00000544301 TMEM60Q9H2L4 133 aa20.4■□□□□ 0.86
VIM-209ENST00000544301 ADD3Q9UEY8 706 aaKnown RBP20.4■□□□□ 0.86
VIM-209ENST00000544301 TRPC5Q9UL62 973 aaPredicted RBP20.4■□□□□ 0.86
VIM-209ENST00000544301 C6orf229H3BNL8 230 aa20.39■□□□□ 0.86
VIM-209ENST00000544301 POLRMTO00411 1230 aaKnown RBP20.39■□□□□ 0.86
VIM-209ENST00000544301 ZSCAN12O43309 604 aa20.39■□□□□ 0.86
VIM-209ENST00000544301 KARSQ15046 597 aaKnown RBP20.39■□□□□ 0.86
VIM-209ENST00000544301 RRAGBQ5VZM2 374 aa20.39■□□□□ 0.86
VIM-209ENST00000544301 CPVLQ9H3G5 476 aa20.39■□□□□ 0.86
VIM-209ENST00000544301 PPP2R2CQ9Y2T4 447 aa20.39■□□□□ 0.86
VIM-209ENST00000544301 KLRG2A4D1S0 409 aaPredicted RBP20.39■□□□□ 0.85
VIM-209ENST00000544301 PARP1P09874 1014 aaKnown RBP20.39■□□□□ 0.85
VIM-209ENST00000544301 PBX1P40424 430 aa20.39■□□□□ 0.85
VIM-209ENST00000544301 STAT6P42226 847 aa20.39■□□□□ 0.85
VIM-209ENST00000544301 CCDC93Q567U6 631 aa20.39■□□□□ 0.85
VIM-209ENST00000544301 CTAGE1Q96RT6 745 aa20.39■□□□□ 0.85
VIM-209ENST00000544301 ZMYND12Q9H0C1 365 aa20.39■□□□□ 0.85
VIM-209ENST00000544301 DISC1Q9NRI5 854 aa20.39■□□□□ 0.85
VIM-209ENST00000544301 PHLPP2Q6ZVD8 1323 aa20.39■□□□□ 0.85
VIM-209ENST00000544301 MYH1P12882 1939 aa20.38■□□□□ 0.85
VIM-209ENST00000544301 RPN1P04843 607 aaKnown RBP20.38■□□□□ 0.85
VIM-209ENST00000544301 USP17L2Q6R6M4 530 aa20.38■□□□□ 0.85
VIM-209ENST00000544301 CEP95Q96GE4 821 aa20.38■□□□□ 0.85
VIM-209ENST00000544301 RMND1Q9NWS8 449 aa20.38■□□□□ 0.85
VIM-209ENST00000544301 RWDD2AQ9UIY3 292 aa20.38■□□□□ 0.85
VIM-209ENST00000544301 NOVP48745 357 aa20.38■□□□□ 0.85
VIM-209ENST00000544301 ZNF658Q5TYW1 1059 aaPredicted RBP20.38■□□□□ 0.85
VIM-209ENST00000544301 DNAI1Q9UI46 699 aa20.38■□□□□ 0.85
VIM-209ENST00000544301 LTBP1Q14766 1721 aa20.37■□□□□ 0.85
VIM-209ENST00000544301 AKR1B15C9JRZ8 316 aaPredicted RBP20.37■□□□□ 0.85
VIM-209ENST00000544301 COBLO75128 1261 aa20.37■□□□□ 0.85
VIM-209ENST00000544301 NAPAP54920 295 aa20.37■□□□□ 0.85
VIM-209ENST00000544301 NAALADL2Q58DX5 795 aa20.37■□□□□ 0.85
VIM-209ENST00000544301 CGNQ9P2M7 1197 aaKnown RBP20.37■□□□□ 0.85
VIM-209ENST00000544301 DAGLAQ9Y4D2 1042 aa20.37■□□□□ 0.85
VIM-209ENST00000544301 EP400Q96L91 3159 aa20.37■□□□□ 0.85
VIM-209ENST00000544301 PP2D1A8MPX8 630 aa20.36■□□□□ 0.85
VIM-209ENST00000544301 LAD1O00515 517 aa20.36■□□□□ 0.85
VIM-209ENST00000544301 GTF2IP78347 998 aa20.36■□□□□ 0.85
VIM-209ENST00000544301 TOGARAM2Q6ZUX3 1019 aa20.36■□□□□ 0.85
VIM-209ENST00000544301 IGSF22Q8N9C0 903 aa20.36■□□□□ 0.85
VIM-209ENST00000544301 PANX2Q96RD6 677 aa20.36■□□□□ 0.85
VIM-209ENST00000544301 NOL12Q9UGY1 213 aaKnown RBP eCLIP20.36■□□□□ 0.85
VIM-209ENST00000544301 V9GYY5 206 aaPredicted RBP20.36■□□□□ 0.85
VIM-209ENST00000544301 LRRC37AA6NMS7 1700 aa20.36■□□□□ 0.85
VIM-209ENST00000544301 SMARCA1P28370 1054 aa20.36■□□□□ 0.85
VIM-209ENST00000544301 PRPHP41219 470 aa20.36■□□□□ 0.85
VIM-209ENST00000544301 PAK1Q13153 545 aa20.36■□□□□ 0.85
VIM-209ENST00000544301 FILIP1LQ4L180 1135 aa20.36■□□□□ 0.85
VIM-209ENST00000544301 SP8Q8IXZ3 490 aa20.36■□□□□ 0.85
VIM-209ENST00000544301 CCDC12Q8WUD4 166 aaPredicted RBP20.36■□□□□ 0.85
VIM-209ENST00000544301 RRP36Q96EU6 259 aaKnown RBP20.36■□□□□ 0.85
VIM-209ENST00000544301 PPEF1O14829 653 aaPredicted RBP20.35■□□□□ 0.85
VIM-209ENST00000544301 RBL2Q08999 1139 aa20.35■□□□□ 0.85
VIM-209ENST00000544301 KRT25Q7Z3Z0 450 aa20.35■□□□□ 0.85
VIM-209ENST00000544301 TMC4Q7Z404 712 aa20.35■□□□□ 0.85
VIM-209ENST00000544301 NELFBQ8WX92 580 aa20.35■□□□□ 0.85
VIM-209ENST00000544301 CCSER1Q9C0I3 900 aa20.35■□□□□ 0.85
VIM-209ENST00000544301 LIMA1Q9UHB6 759 aaKnown RBP20.35■□□□□ 0.85
VIM-209ENST00000544301 FOCADQ5VW36 1801 aa20.35■□□□□ 0.85
VIM-209ENST00000544301 SMCO2A6NFE2 343 aa20.35■□□□□ 0.85
VIM-209ENST00000544301 UBA7P41226 1012 aa20.35■□□□□ 0.85
VIM-209ENST00000544301 PPFIBP1Q86W92 1011 aa20.35■□□□□ 0.85
VIM-209ENST00000544301 C6orf50Q9HD87 102 aa20.35■□□□□ 0.85
VIM-209ENST00000544301 GDAQ9Y2T3 454 aa20.35■□□□□ 0.85
VIM-209ENST00000544301 GOLGA6L9A6NEM1 432 aa20.34■□□□□ 0.85
VIM-209ENST00000544301 LRRC10BA6NIK2 292 aa20.34■□□□□ 0.85
VIM-209ENST00000544301 USP17L5A8MUK1 530 aa20.34■□□□□ 0.85
VIM-209ENST00000544301 FANCGO15287 622 aa20.34■□□□□ 0.85
VIM-209ENST00000544301 KRT31Q15323 416 aa20.34■□□□□ 0.85
VIM-209ENST00000544301 VAT1LQ9HCJ6 419 aa20.34■□□□□ 0.85
VIM-209ENST00000544301 SEC63Q9UGP8 760 aaKnown RBP20.34■□□□□ 0.85
VIM-209ENST00000544301 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.34■□□□□ 0.858e-10■□□□□ 9.4
VIM-209ENST00000544301 RIMBP2O15034 1052 aa20.33■□□□□ 0.85
VIM-209ENST00000544301 GNA11P29992 359 aa20.33■□□□□ 0.85
VIM-209ENST00000544301 PRCPP42785 496 aa20.33■□□□□ 0.85
VIM-209ENST00000544301 NONOQ15233 471 aaKnown RBP eCLIP20.33■□□□□ 0.85
VIM-209ENST00000544301 RASSF8Q8NHQ8 419 aa20.33■□□□□ 0.85
VIM-209ENST00000544301 PIGSQ96S52 555 aa20.33■□□□□ 0.85
VIM-209ENST00000544301 COA1Q9GZY4 146 aa20.33■□□□□ 0.85
VIM-209ENST00000544301 ELF2Q15723 593 aa20.33■□□□□ 0.84
VIM-209ENST00000544301 ATP6V0A2Q9Y487 856 aa20.33■□□□□ 0.84
VIM-209ENST00000544301 PLIN4Q96Q06 1357 aa20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms