RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-238ENST00000540663 NBPF3Q9H094 633 aa13.95□□□□□ -0.18
SYNE1-238ENST00000540663 CRISPLD2Q9H0B8 497 aa13.95□□□□□ -0.18
SYNE1-238ENST00000540663 CTDP1Q9Y5B0 961 aaPredicted RBP13.95□□□□□ -0.18
SYNE1-238ENST00000540663 TFRCP02786 760 aaKnown RBP13.94□□□□□ -0.18
SYNE1-238ENST00000540663 TOP1P11387 765 aaKnown RBP13.94□□□□□ -0.18
SYNE1-238ENST00000540663 CHMLP26374 656 aa13.94□□□□□ -0.18
SYNE1-238ENST00000540663 STAT2P52630 851 aa13.94□□□□□ -0.18
SYNE1-238ENST00000540663 OAZ1P54368 228 aa13.94□□□□□ -0.18
SYNE1-238ENST00000540663 CACNB2Q08289 660 aaPredicted RBP13.94□□□□□ -0.18
SYNE1-238ENST00000540663 TRIM32Q13049 653 aa13.94□□□□□ -0.18
SYNE1-238ENST00000540663 CCL14Q16627 93 aa13.94□□□□□ -0.18
SYNE1-238ENST00000540663 CCDC178Q5BJE1 867 aa13.94□□□□□ -0.18
SYNE1-238ENST00000540663 PRPF38BQ5VTL8 546 aaKnown RBP13.94□□□□□ -0.18
SYNE1-238ENST00000540663 OLFML2BQ68BL8 750 aa13.94□□□□□ -0.18
SYNE1-238ENST00000540663 UBE2Q1Q7Z7E8 422 aa13.94□□□□□ -0.18
SYNE1-238ENST00000540663 ANKLE1Q8NAG6 615 aa13.94□□□□□ -0.18
SYNE1-238ENST00000540663 DCAF4Q8WV16 495 aa13.94□□□□□ -0.18
SYNE1-238ENST00000540663 KIFC2Q96AC6 838 aa13.94□□□□□ -0.18
SYNE1-238ENST00000540663 TTC14Q96N46 770 aa13.94□□□□□ -0.18
SYNE1-238ENST00000540663 SLC38A10Q9HBR0 1119 aa13.94□□□□□ -0.18
SYNE1-238ENST00000540663 COL11A1P12107 1806 aaPredicted RBP13.94□□□□□ -0.18
SYNE1-238ENST00000540663 TMEM232C9JQI7 657 aa13.93□□□□□ -0.18
SYNE1-238ENST00000540663 NMT2O60551 498 aa13.93□□□□□ -0.18
SYNE1-238ENST00000540663 FARP2O94887 1054 aaPredicted RBP13.93□□□□□ -0.18
SYNE1-238ENST00000540663 SNRNP48Q6IEG0 339 aaKnown RBP13.93□□□□□ -0.18
SYNE1-238ENST00000540663 RCSD1Q6JBY9 416 aa13.93□□□□□ -0.18
SYNE1-238ENST00000540663 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.93□□□□□ -0.18
SYNE1-238ENST00000540663 MMP19Q99542 508 aa13.93□□□□□ -0.18
SYNE1-238ENST00000540663 CNNM2Q9H8M5 875 aa13.93□□□□□ -0.18
SYNE1-238ENST00000540663 ISY1Q9ULR0 285 aaKnown RBP13.93□□□□□ -0.18
SYNE1-238ENST00000540663 IGHA2P01877 340 aa13.92□□□□□ -0.18
SYNE1-238ENST00000540663 MCCP23508 829 aa13.92□□□□□ -0.18
SYNE1-238ENST00000540663 IKQ13123 557 aaPredicted RBP13.92□□□□□ -0.18
SYNE1-238ENST00000540663 KCTD2Q14681 263 aa13.92□□□□□ -0.18
SYNE1-238ENST00000540663 IQCA1Q86XH1 822 aa13.92□□□□□ -0.18
SYNE1-238ENST00000540663 NPLOC4Q8TAT6 608 aa13.92□□□□□ -0.18
SYNE1-238ENST00000540663 TMEM47Q9BQJ4 181 aa13.92□□□□□ -0.18
SYNE1-238ENST00000540663 FLRT1Q9NZU1 646 aa13.92□□□□□ -0.18
SYNE1-238ENST00000540663 FBXO40Q9UH90 709 aa13.92□□□□□ -0.18
SYNE1-238ENST00000540663 DIS3Q9Y2L1 958 aaKnown RBP13.92□□□□□ -0.18
SYNE1-238ENST00000540663 NEDD4P46934 1319 aa13.91□□□□□ -0.18
SYNE1-238ENST00000540663 SGSM2O43147 1006 aa13.91□□□□□ -0.18
SYNE1-238ENST00000540663 MSCO60682 206 aa13.91□□□□□ -0.18
SYNE1-238ENST00000540663 COBLO75128 1261 aa13.91□□□□□ -0.18
SYNE1-238ENST00000540663 DGKHQ86XP1 1220 aa13.91□□□□□ -0.18
SYNE1-238ENST00000540663 HTATIP2Q9BUP3 242 aa13.91□□□□□ -0.18
SYNE1-238ENST00000540663 KRT23Q9C075 422 aa13.91□□□□□ -0.18
SYNE1-238ENST00000540663 OGDHLQ9ULD0 1010 aa13.91□□□□□ -0.18
SYNE1-238ENST00000540663 CCDC96Q2M329 555 aa13.9□□□□□ -0.18
SYNE1-238ENST00000540663 TKFCQ3LXA3 575 aa13.9□□□□□ -0.18
SYNE1-238ENST00000540663 BTNL9Q6UXG8 535 aa13.9□□□□□ -0.18
SYNE1-238ENST00000540663 KCTD1Q719H9 257 aa13.9□□□□□ -0.18
SYNE1-238ENST00000540663 CPXCR1Q8N123 301 aa13.9□□□□□ -0.18
SYNE1-238ENST00000540663 CHST13Q8NET6 341 aa13.9□□□□□ -0.18
SYNE1-238ENST00000540663 MAML3Q96JK9 1138 aa13.9□□□□□ -0.18
SYNE1-238ENST00000540663 IL25Q9H293 177 aa13.9□□□□□ -0.18
SYNE1-238ENST00000540663 NRBP1Q9UHY1 535 aa13.9□□□□□ -0.18
SYNE1-238ENST00000540663 U3KPZ7 1027 aaPredicted RBP13.9□□□□□ -0.18
SYNE1-238ENST00000540663 KDM4AO75164 1064 aa13.89□□□□□ -0.19
SYNE1-238ENST00000540663 CCND3P30281 292 aaPredicted RBP13.89□□□□□ -0.19
SYNE1-238ENST00000540663 CYP2C19P33261 490 aa13.89□□□□□ -0.19
SYNE1-238ENST00000540663 ZNF792Q3KQV3 632 aa13.89□□□□□ -0.19
SYNE1-238ENST00000540663 NECAB2Q7Z6G3 386 aa13.89□□□□□ -0.19
SYNE1-238ENST00000540663 MSL3Q8N5Y2 521 aaKnown RBP13.89□□□□□ -0.19
SYNE1-238ENST00000540663 ANKS1AQ92625 1134 aa13.89□□□□□ -0.19
SYNE1-238ENST00000540663 RAVER2Q9HCJ3 691 aaKnown RBP13.89□□□□□ -0.19
SYNE1-238ENST00000540663 B4E1Z4 1266 aa13.88□□□□□ -0.19
SYNE1-238ENST00000540663 NEFLP07196 543 aa13.88□□□□□ -0.19
SYNE1-238ENST00000540663 SNHG28P0DPA3 235 aa13.88□□□□□ -0.19
SYNE1-238ENST00000540663 CYBAP13498 195 aa13.88□□□□□ -0.19
SYNE1-238ENST00000540663 TRDNQ13061 729 aa13.88□□□□□ -0.19
SYNE1-238ENST00000540663 BMP2KLQ5H9B9 411 aa13.88□□□□□ -0.19
SYNE1-238ENST00000540663 GPATCH4Q5T3I0 446 aaKnown RBP13.88□□□□□ -0.19
SYNE1-238ENST00000540663 LHX8Q68G74 356 aa13.88□□□□□ -0.19
SYNE1-238ENST00000540663 DDX11Q96FC9 970 aa13.88□□□□□ -0.19
SYNE1-238ENST00000540663 ZSCAN10Q96SZ4 725 aaPredicted RBP13.88□□□□□ -0.19
SYNE1-238ENST00000540663 DDX20Q9UHI6 824 aaKnown RBP13.88□□□□□ -0.19
SYNE1-238ENST00000540663 PNMA2Q9UL42 364 aa13.88□□□□□ -0.19
SYNE1-238ENST00000540663 PRR12Q9ULL5 1215 aa13.88□□□□□ -0.19
SYNE1-238ENST00000540663 RIPK3Q9Y572 518 aa13.88□□□□□ -0.19
SYNE1-238ENST00000540663 DNAJC25-GNG10A0A024R161 153 aa13.87□□□□□ -0.19
SYNE1-238ENST00000540663 PGK2P07205 417 aa13.87□□□□□ -0.19
SYNE1-238ENST00000540663 PDHBP11177 359 aa13.87□□□□□ -0.19
SYNE1-238ENST00000540663 PTH1RQ03431 593 aa13.87□□□□□ -0.19
SYNE1-238ENST00000540663 ZNF543Q08ER8 600 aa13.87□□□□□ -0.19
SYNE1-238ENST00000540663 SYDE2Q5VT97 1194 aa13.87□□□□□ -0.19
SYNE1-238ENST00000540663 ZNF467Q7Z7K2 595 aaPredicted RBP13.87□□□□□ -0.19
SYNE1-238ENST00000540663 PAWRQ96IZ0 340 aaKnown RBP13.87□□□□□ -0.19
SYNE1-238ENST00000540663 CCDC136Q96JN2 1154 aa13.87□□□□□ -0.19
SYNE1-238ENST00000540663 TINF2Q9BSI4 451 aa13.87□□□□□ -0.19
SYNE1-238ENST00000540663 UBAC1Q9BSL1 405 aa13.87□□□□□ -0.19
SYNE1-238ENST00000540663 ACAD9Q9H845 621 aa13.87□□□□□ -0.19
SYNE1-238ENST00000540663 KAT14Q9H8E8 782 aa13.87□□□□□ -0.19
SYNE1-238ENST00000540663 ZSWIM5Q9P217 1185 aa13.87□□□□□ -0.19
SYNE1-238ENST00000540663 MTMR7Q9Y216 660 aa13.87□□□□□ -0.19
SYNE1-238ENST00000540663 ZNFX1Q9P2E3 1918 aaKnown RBP13.87□□□□□ -0.19
SYNE1-238ENST00000540663 ZNF536O15090 1300 aa13.87□□□□□ -0.19
SYNE1-238ENST00000540663 SYNGAP1Q96PV0 1343 aa13.87□□□□□ -0.19
SYNE1-238ENST00000540663 SEPT4O43236 478 aa13.86□□□□□ -0.19
SYNE1-238ENST00000540663 ICAM1P05362 532 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms