RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.67□□□□□ -0.22
RTN3-209ENST00000538995 NECAB2Q7Z6G3 386 aa13.67□□□□□ -0.22
RTN3-209ENST00000538995 FAM160B2Q86V87 743 aa13.67□□□□□ -0.22
RTN3-209ENST00000538995 DSCC1Q9BVC3 393 aa13.67□□□□□ -0.22
RTN3-209ENST00000538995 SLC38A10Q9HBR0 1119 aa13.67□□□□□ -0.22
RTN3-209ENST00000538995 IL17RBQ9NRM6 502 aa13.67□□□□□ -0.22
RTN3-209ENST00000538995 TCP11L1Q9NUJ3 509 aa13.67□□□□□ -0.22
RTN3-209ENST00000538995 TACC3Q9Y6A5 838 aa13.67□□□□□ -0.22
RTN3-209ENST00000538995 RAD50Q92878 1312 aa13.66□□□□□ -0.22
RTN3-209ENST00000538995 COBLO75128 1261 aa13.66□□□□□ -0.22
RTN3-209ENST00000538995 GSPT1P15170 499 aaKnown RBP13.66□□□□□ -0.22
RTN3-209ENST00000538995 CCND3P30281 292 aaPredicted RBP13.66□□□□□ -0.22
RTN3-209ENST00000538995 SLC1A4P43007 532 aa13.66□□□□□ -0.22
RTN3-209ENST00000538995 KCTD2Q14681 263 aa13.66□□□□□ -0.22
RTN3-209ENST00000538995 AKNAD1Q5T1N1 836 aa13.66□□□□□ -0.22
RTN3-209ENST00000538995 SNRNP48Q6IEG0 339 aaKnown RBP13.66□□□□□ -0.22
RTN3-209ENST00000538995 CHURC1Q8WUH1 139 aa13.66□□□□□ -0.22
RTN3-209ENST00000538995 MMP19Q99542 508 aa13.66□□□□□ -0.22
RTN3-209ENST00000538995 TOMM22Q9NS69 142 aa13.66□□□□□ -0.22
RTN3-209ENST00000538995 DIS3Q9Y2L1 958 aaKnown RBP13.66□□□□□ -0.22
RTN3-209ENST00000538995 CTDP1Q9Y5B0 961 aaPredicted RBP13.66□□□□□ -0.22
RTN3-209ENST00000538995 CEP290O15078 2479 aa13.66□□□□□ -0.22
RTN3-209ENST00000538995 MYH4Q9Y623 1939 aa13.65□□□□□ -0.22
RTN3-209ENST00000538995 NMT2O60551 498 aa13.65□□□□□ -0.22
RTN3-209ENST00000538995 CYBAP13498 195 aa13.65□□□□□ -0.22
RTN3-209ENST00000538995 HOXD11P31277 338 aaPredicted RBP13.65□□□□□ -0.22
RTN3-209ENST00000538995 CYP2C19P33261 490 aa13.65□□□□□ -0.22
RTN3-209ENST00000538995 HAND2P61296 217 aa13.65□□□□□ -0.22
RTN3-209ENST00000538995 LHX8Q68G74 356 aa13.65□□□□□ -0.22
RTN3-209ENST00000538995 MFSD6Q6ZSS7 791 aa13.65□□□□□ -0.22
RTN3-209ENST00000538995 TBC1D10CQ8IV04 446 aa13.65□□□□□ -0.22
RTN3-209ENST00000538995 DCAF4Q8WV16 495 aa13.65□□□□□ -0.22
RTN3-209ENST00000538995 KIFC2Q96AC6 838 aa13.65□□□□□ -0.22
RTN3-209ENST00000538995 PAWRQ96IZ0 340 aaKnown RBP13.65□□□□□ -0.22
RTN3-209ENST00000538995 MAML3Q96JK9 1138 aa13.65□□□□□ -0.22
RTN3-209ENST00000538995 NBPF3Q9H094 633 aa13.65□□□□□ -0.22
RTN3-209ENST00000538995 INCENPQ9NQS7 918 aa13.65□□□□□ -0.22
RTN3-209ENST00000538995 FBXO40Q9UH90 709 aa13.65□□□□□ -0.22
RTN3-209ENST00000538995 DDX20Q9UHI6 824 aaKnown RBP13.65□□□□□ -0.22
RTN3-209ENST00000538995 NRBP1Q9UHY1 535 aa13.65□□□□□ -0.22
RTN3-209ENST00000538995 CTNNA3Q9UI47 895 aa13.65□□□□□ -0.22
RTN3-209ENST00000538995 TMEM232C9JQI7 657 aa13.64□□□□□ -0.23
RTN3-209ENST00000538995 ZNF213O14771 459 aa13.64□□□□□ -0.23
RTN3-209ENST00000538995 TOP1P11387 765 aaKnown RBP13.64□□□□□ -0.23
RTN3-209ENST00000538995 MNX1P50219 401 aaPredicted RBP13.64□□□□□ -0.23
RTN3-209ENST00000538995 RRP12Q5JTH9 1297 aaKnown RBP13.64□□□□□ -0.23
RTN3-209ENST00000538995 RCSD1Q6JBY9 416 aa13.64□□□□□ -0.23
RTN3-209ENST00000538995 MSL3Q8N5Y2 521 aaKnown RBP13.64□□□□□ -0.23
RTN3-209ENST00000538995 CHST13Q8NET6 341 aa13.64□□□□□ -0.23
RTN3-209ENST00000538995 DIS3LQ8TF46 1054 aaKnown RBP13.64□□□□□ -0.23
RTN3-209ENST00000538995 ESR2Q92731 530 aa13.64□□□□□ -0.23
RTN3-209ENST00000538995 DPF3Q92784 378 aa13.64□□□□□ -0.23
RTN3-209ENST00000538995 TTC14Q96N46 770 aa13.64□□□□□ -0.23
RTN3-209ENST00000538995 NR2E3Q9Y5X4 410 aa13.64□□□□□ -0.23
RTN3-209ENST00000538995 MCCP23508 829 aa13.63□□□□□ -0.23
RTN3-209ENST00000538995 IKQ13123 557 aaPredicted RBP13.63□□□□□ -0.23
RTN3-209ENST00000538995 IMMTQ16891 758 aaKnown RBP13.63□□□□□ -0.23
RTN3-209ENST00000538995 ZNF792Q3KQV3 632 aa13.63□□□□□ -0.23
RTN3-209ENST00000538995 CCDC178Q5BJE1 867 aa13.63□□□□□ -0.23
RTN3-209ENST00000538995 RUFY2Q8WXA3 655 aa13.63□□□□□ -0.23
RTN3-209ENST00000538995 C11orf49Q9H6J7 331 aa13.63□□□□□ -0.23
RTN3-209ENST00000538995 ISY1Q9ULR0 285 aaKnown RBP13.63□□□□□ -0.23
RTN3-209ENST00000538995 NEDD4P46934 1319 aa13.63□□□□□ -0.23
RTN3-209ENST00000538995 COL11A1P12107 1806 aaPredicted RBP13.62□□□□□ -0.23
RTN3-209ENST00000538995 LAMA4Q16363 1823 aa13.62□□□□□ -0.23
RTN3-209ENST00000538995 H0YGN5 161 aa13.62□□□□□ -0.23
RTN3-209ENST00000538995 SEPT4O43236 478 aa13.62□□□□□ -0.23
RTN3-209ENST00000538995 COL6A1P12109 1028 aa13.62□□□□□ -0.23
RTN3-209ENST00000538995 TKFCQ3LXA3 575 aa13.62□□□□□ -0.23
RTN3-209ENST00000538995 CPXCR1Q8N123 301 aa13.62□□□□□ -0.23
RTN3-209ENST00000538995 TRPV1Q8NER1 839 aa13.62□□□□□ -0.23
RTN3-209ENST00000538995 TMEM47Q9BQJ4 181 aa13.62□□□□□ -0.23
RTN3-209ENST00000538995 RAVER2Q9HCJ3 691 aaKnown RBP13.62□□□□□ -0.23
RTN3-209ENST00000538995 RIPK3Q9Y572 518 aa13.62□□□□□ -0.23
RTN3-209ENST00000538995 DNAJC25-GNG10A0A024R161 153 aa13.61□□□□□ -0.23
RTN3-209ENST00000538995 EVI5O60447 810 aa13.61□□□□□ -0.23
RTN3-209ENST00000538995 PGK2P07205 417 aa13.61□□□□□ -0.23
RTN3-209ENST00000538995 CNGA1P29973 690 aa13.61□□□□□ -0.23
RTN3-209ENST00000538995 CCDC96Q2M329 555 aa13.61□□□□□ -0.23
RTN3-209ENST00000538995 BTNL9Q6UXG8 535 aa13.61□□□□□ -0.23
RTN3-209ENST00000538995 KCTD1Q719H9 257 aa13.61□□□□□ -0.23
RTN3-209ENST00000538995 ZNF467Q7Z7K2 595 aaPredicted RBP13.61□□□□□ -0.23
RTN3-209ENST00000538995 IQCA1Q86XH1 822 aa13.61□□□□□ -0.23
RTN3-209ENST00000538995 DGKHQ86XP1 1220 aa13.61□□□□□ -0.23
RTN3-209ENST00000538995 DDX11Q96FC9 970 aa13.61□□□□□ -0.23
RTN3-209ENST00000538995 TINF2Q9BSI4 451 aa13.61□□□□□ -0.23
RTN3-209ENST00000538995 CNNM2Q9H8M5 875 aa13.61□□□□□ -0.23
RTN3-209ENST00000538995 SYNGAP1Q96PV0 1343 aa13.61□□□□□ -0.23
RTN3-209ENST00000538995 DNM1LO00429 736 aa13.6□□□□□ -0.23
RTN3-209ENST00000538995 SNHG28P0DPA3 235 aa13.6□□□□□ -0.23
RTN3-209ENST00000538995 CHMLP26374 656 aa13.6□□□□□ -0.23
RTN3-209ENST00000538995 MAMDC4Q6UXC1 1216 aa13.6□□□□□ -0.23
RTN3-209ENST00000538995 KRT23Q9C075 422 aa13.6□□□□□ -0.23
RTN3-209ENST00000538995 IL25Q9H293 177 aa13.6□□□□□ -0.23
RTN3-209ENST00000538995 ACAD9Q9H845 621 aa13.6□□□□□ -0.23
RTN3-209ENST00000538995 PNMA2Q9UL42 364 aa13.6□□□□□ -0.23
RTN3-209ENST00000538995 PRR12Q9ULL5 1215 aa13.6□□□□□ -0.23
RTN3-209ENST00000538995 PFASO15067 1338 aa13.6□□□□□ -0.23
RTN3-209ENST00000538995 ZNF536O15090 1300 aa13.6□□□□□ -0.23
RTN3-209ENST00000538995 KDM4AO75164 1064 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms