RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 ZNF792Q3KQV3 632 aa16.55■□□□□ 0.24
SYNE1-235ENST00000537033 LRIT3Q3SXY7 679 aa16.55■□□□□ 0.24
SYNE1-235ENST00000537033 CPXCR1Q8N123 301 aa16.55■□□□□ 0.24
SYNE1-235ENST00000537033 GMCL1P1Q8NEA9 526 aa16.55■□□□□ 0.24
SYNE1-235ENST00000537033 MKL1Q969V6 931 aa16.55■□□□□ 0.24
SYNE1-235ENST00000537033 KIFC2Q96AC6 838 aa16.55■□□□□ 0.24
SYNE1-235ENST00000537033 DDX11Q96FC9 970 aa16.55■□□□□ 0.24
SYNE1-235ENST00000537033 CRBNQ96SW2 442 aa16.55■□□□□ 0.24
SYNE1-235ENST00000537033 XPNPEP3Q9NQH7 507 aa16.55■□□□□ 0.24
SYNE1-235ENST00000537033 FEM1BQ9UK73 627 aa16.55■□□□□ 0.24
SYNE1-235ENST00000537033 ATP11BQ9Y2G3 1177 aa16.55■□□□□ 0.24
SYNE1-235ENST00000537033 ATP2A1O14983 1001 aa16.54■□□□□ 0.24
SYNE1-235ENST00000537033 LRRC41Q15345 812 aa16.54■□□□□ 0.24
SYNE1-235ENST00000537033 FAM47AQ5JRC9 791 aa16.54■□□□□ 0.24
SYNE1-235ENST00000537033 GPR153Q6NV75 609 aa16.54■□□□□ 0.24
SYNE1-235ENST00000537033 MSL3Q8N5Y2 521 aaKnown RBP16.54■□□□□ 0.24
SYNE1-235ENST00000537033 NEDD1Q8NHV4 660 aa16.54■□□□□ 0.24
SYNE1-235ENST00000537033 EVI5LQ96CN4 794 aa16.54■□□□□ 0.24
SYNE1-235ENST00000537033 FBXO40Q9UH90 709 aa16.54■□□□□ 0.24
SYNE1-235ENST00000537033 LTBP2Q14767 1821 aa16.54■□□□□ 0.24
SYNE1-235ENST00000537033 BMP3P12645 472 aa16.53■□□□□ 0.24
SYNE1-235ENST00000537033 AKR1A1P14550 325 aa16.53■□□□□ 0.24
SYNE1-235ENST00000537033 TFAP4Q01664 338 aa16.53■□□□□ 0.24
SYNE1-235ENST00000537033 IKQ13123 557 aaPredicted RBP16.53■□□□□ 0.24
SYNE1-235ENST00000537033 SLFN13Q68D06 897 aa16.53■□□□□ 0.24
SYNE1-235ENST00000537033 SLC39A5Q6ZMH5 540 aa16.53■□□□□ 0.24
SYNE1-235ENST00000537033 RNF180Q86T96 592 aa16.53■□□□□ 0.24
SYNE1-235ENST00000537033 SZT2Q5T011 3432 aa16.53■□□□□ 0.24
SYNE1-235ENST00000537033 SYNGAP1Q96PV0 1343 aa16.52■□□□□ 0.24
SYNE1-235ENST00000537033 SALL3Q9BXA9 1300 aa16.52■□□□□ 0.24
SYNE1-235ENST00000537033 SMCHD1A6NHR9 2005 aa16.52■□□□□ 0.24
SYNE1-235ENST00000537033 TSPY2A6NKD2 308 aa16.52■□□□□ 0.24
SYNE1-235ENST00000537033 FDX1P10109 184 aa16.52■□□□□ 0.24
SYNE1-235ENST00000537033 ADCYAP1R1P41586 468 aa16.52■□□□□ 0.24
SYNE1-235ENST00000537033 STAT2P52630 851 aa16.52■□□□□ 0.24
SYNE1-235ENST00000537033 OAZ1P54368 228 aa16.52■□□□□ 0.24
SYNE1-235ENST00000537033 ANKRD35Q8N283 1001 aa16.52■□□□□ 0.24
SYNE1-235ENST00000537033 SLC38A10Q9HBR0 1119 aa16.52■□□□□ 0.24
SYNE1-235ENST00000537033 RAVER2Q9HCJ3 691 aaKnown RBP16.52■□□□□ 0.24
SYNE1-235ENST00000537033 PRDM5Q9NQX1 630 aaPredicted RBP16.52■□□□□ 0.24
SYNE1-235ENST00000537033 RIPK3Q9Y572 518 aa16.52■□□□□ 0.24
SYNE1-235ENST00000537033 SLC1A4P43007 532 aa16.51■□□□□ 0.23
SYNE1-235ENST00000537033 HDAC1Q13547 482 aaPredicted RBP16.51■□□□□ 0.23
SYNE1-235ENST00000537033 CCDC129Q6ZRS4 1044 aa16.51■□□□□ 0.23
SYNE1-235ENST00000537033 CHST13Q8NET6 341 aa16.51■□□□□ 0.23
SYNE1-235ENST00000537033 CHURC1Q8WUH1 139 aa16.51■□□□□ 0.23
SYNE1-235ENST00000537033 FERMT2Q96AC1 680 aa16.51■□□□□ 0.23
SYNE1-235ENST00000537033 STX8Q9UNK0 236 aa16.51■□□□□ 0.23
SYNE1-235ENST00000537033 PHF24Q9UPV7 400 aa16.51■□□□□ 0.23
SYNE1-235ENST00000537033 DNAJC25-GNG10A0A024R161 153 aa16.5■□□□□ 0.23
SYNE1-235ENST00000537033 TMEM232C9JQI7 657 aa16.5■□□□□ 0.23
SYNE1-235ENST00000537033 PGK1P00558 417 aa16.5■□□□□ 0.23
SYNE1-235ENST00000537033 ZNF865P0CJ78 1059 aaPredicted RBP16.5■□□□□ 0.23
SYNE1-235ENST00000537033 TAL1P17542 331 aaPredicted RBP16.5■□□□□ 0.23
SYNE1-235ENST00000537033 PDE1AP54750 535 aa16.5■□□□□ 0.23
SYNE1-235ENST00000537033 AAMPQ13685 434 aa16.5■□□□□ 0.23
SYNE1-235ENST00000537033 SNX17Q15036 470 aa16.5■□□□□ 0.23
SYNE1-235ENST00000537033 TRIM60Q495X7 471 aa16.5■□□□□ 0.23
SYNE1-235ENST00000537033 ZNF467Q7Z7K2 595 aaPredicted RBP16.5■□□□□ 0.23
SYNE1-235ENST00000537033 FAM160B2Q86V87 743 aa16.5■□□□□ 0.23
SYNE1-235ENST00000537033 DEFB123Q8N688 67 aa16.5■□□□□ 0.23
SYNE1-235ENST00000537033 GMCL1Q96IK5 515 aa16.5■□□□□ 0.23
SYNE1-235ENST00000537033 HELLSQ9NRZ9 838 aa16.5■□□□□ 0.23
SYNE1-235ENST00000537033 ZHX1Q9UKY1 873 aaPredicted RBP16.5■□□□□ 0.23
SYNE1-235ENST00000537033 FAM184BQ9ULE4 1060 aa16.5■□□□□ 0.23
SYNE1-235ENST00000537033 RANBP6O60518 1105 aaKnown RBP16.49■□□□□ 0.23
SYNE1-235ENST00000537033 CTDSPL2Q05D32 466 aa16.49■□□□□ 0.23
SYNE1-235ENST00000537033 C1orf53Q5VUE5 145 aa16.49■□□□□ 0.23
SYNE1-235ENST00000537033 MAMDC4Q6UXC1 1216 aa16.49■□□□□ 0.23
SYNE1-235ENST00000537033 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.49■□□□□ 0.23
SYNE1-235ENST00000537033 TOMM22Q9NS69 142 aa16.49■□□□□ 0.23
SYNE1-235ENST00000537033 HOMER2Q9NSB8 354 aa16.49■□□□□ 0.23
SYNE1-235ENST00000537033 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.49■□□□□ 0.23
SYNE1-235ENST00000537033 DNAH12Q6ZR08 3092 aa16.49■□□□□ 0.23
SYNE1-235ENST00000537033 LAMA3Q16787 3333 aa16.48■□□□□ 0.23
SYNE1-235ENST00000537033 MCM3APO60318 1980 aa16.48■□□□□ 0.23
SYNE1-235ENST00000537033 TICAM2Q86XR7 235 aa16.48■□□□□ 0.23
SYNE1-235ENST00000537033 STAG1Q8WVM7 1258 aa16.48■□□□□ 0.23
SYNE1-235ENST00000537033 LENG1Q96BZ8 264 aaPredicted RBP16.48■□□□□ 0.23
SYNE1-235ENST00000537033 ACAD9Q9H845 621 aa16.48■□□□□ 0.23
SYNE1-235ENST00000537033 ANAPC4Q9UJX5 808 aa16.48■□□□□ 0.23
SYNE1-235ENST00000537033 SYNRGQ9UMZ2 1314 aa16.47■□□□□ 0.23
SYNE1-235ENST00000537033 A0A1W2PQ45 241 aaPredicted RBP16.47■□□□□ 0.23
SYNE1-235ENST00000537033 A0A1W2PQY0 241 aa16.47■□□□□ 0.23
SYNE1-235ENST00000537033 TRIM6-TRIM34B2RNG4 842 aa16.47■□□□□ 0.23
SYNE1-235ENST00000537033 FOXP2O15409 715 aa16.47■□□□□ 0.23
SYNE1-235ENST00000537033 SNAI1O95863 264 aaPredicted RBP16.47■□□□□ 0.23
SYNE1-235ENST00000537033 MCCP23508 829 aa16.47■□□□□ 0.23
SYNE1-235ENST00000537033 MCMDC2Q4G0Z9 681 aa16.47■□□□□ 0.23
SYNE1-235ENST00000537033 VPS53Q5VIR6 699 aa16.47■□□□□ 0.23
SYNE1-235ENST00000537033 NUP133Q8WUM0 1156 aa16.47■□□□□ 0.23
SYNE1-235ENST00000537033 CHMP4CQ96CF2 233 aa16.47■□□□□ 0.23
SYNE1-235ENST00000537033 YTHDC1Q96MU7 727 aaKnown RBP16.47■□□□□ 0.23
SYNE1-235ENST00000537033 TSEN34Q9BSV6 310 aaKnown RBP16.47■□□□□ 0.23
SYNE1-235ENST00000537033 ABHD16BQ9H3Z7 469 aa16.47■□□□□ 0.23
SYNE1-235ENST00000537033 SPC25Q9HBM1 224 aa16.47■□□□□ 0.23
SYNE1-235ENST00000537033 PDLIM7Q9NR12 457 aa16.47■□□□□ 0.23
SYNE1-235ENST00000537033 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.47■□□□□ 0.23
SYNE1-235ENST00000537033 POTEB2H3BUK9 544 aa16.46■□□□□ 0.23
SYNE1-235ENST00000537033 ORC4O43929 436 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms