RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647	SHH	Q15465	462 aa		13.85	□□□□□ -0.19
CTNND1-238	ENST00000534647	TRIM60	Q495X7	471 aa		13.85	□□□□□ -0.19
CTNND1-238	ENST00000534647	SLFNL1	Q499Z3	407 aa		13.85	□□□□□ -0.19
CTNND1-238	ENST00000534647	SBK1	Q52WX2	424 aa		13.85	□□□□□ -0.19
CTNND1-238	ENST00000534647	GIMAP6	Q6P9H5	292 aa		13.85	□□□□□ -0.19
CTNND1-238	ENST00000534647	REPS2	Q8NFH8	660 aa		13.85	□□□□□ -0.19
CTNND1-238	ENST00000534647	MMP19	Q99542	508 aa		13.85	□□□□□ -0.19
CTNND1-238	ENST00000534647	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	13.85	□□□□□ -0.19
CTNND1-238	ENST00000534647	PDLIM7	Q9NR12	457 aa		13.85	□□□□□ -0.19
CTNND1-238	ENST00000534647	ZNF214	Q9UL59	606 aa	Predicted RBP	13.85	□□□□□ -0.19
CTNND1-238	ENST00000534647	COG6	Q9Y2V7	657 aa		13.85	□□□□□ -0.19
CTNND1-238	ENST00000534647	TACC3	Q9Y6A5	838 aa		13.85	□□□□□ -0.19
CTNND1-238	ENST00000534647	SLC4A4	Q9Y6R1	1079 aa		13.85	□□□□□ -0.19
CTNND1-238	ENST00000534647	ATP2A1	O14983	1001 aa		13.84	□□□□□ -0.19
CTNND1-238	ENST00000534647	RARB	P10826	455 aa		13.84	□□□□□ -0.19
CTNND1-238	ENST00000534647	SMAD3	P84022	425 aa	Known RBP	13.84	□□□□□ -0.19
CTNND1-238	ENST00000534647	FAM47A	Q5JRC9	791 aa		13.84	□□□□□ -0.19
CTNND1-238	ENST00000534647	ZNF697	Q5TEC3	545 aa		13.84	□□□□□ -0.19
CTNND1-238	ENST00000534647	ANO1	Q5XXA6	986 aa		13.84	□□□□□ -0.19
CTNND1-238	ENST00000534647	RNF180	Q86T96	592 aa		13.84	□□□□□ -0.19
CTNND1-238	ENST00000534647	BAD	Q92934	168 aa		13.84	□□□□□ -0.19
CTNND1-238	ENST00000534647	TSEN34	Q9BSV6	310 aa	Known RBP	13.84	□□□□□ -0.19
CTNND1-238	ENST00000534647	PUS7L	Q9H0K6	701 aa	Known RBP	13.84	□□□□□ -0.19
CTNND1-238	ENST00000534647	XPNPEP3	Q9NQH7	507 aa		13.84	□□□□□ -0.19
CTNND1-238	ENST00000534647	FBXO28	Q9NVF7	368 aa		13.84	□□□□□ -0.19
CTNND1-238	ENST00000534647	NYAP2	Q9P242	653 aa		13.84	□□□□□ -0.19
CTNND1-238	ENST00000534647	ARPP21	Q9UBL0	812 aa	Predicted RBP	13.84	□□□□□ -0.19
CTNND1-238	ENST00000534647	TRIM43B	A6NCK2	446 aa		13.83	□□□□□ -0.2
CTNND1-238	ENST00000534647	ZNF865	P0CJ78	1059 aa	Predicted RBP	13.83	□□□□□ -0.2
CTNND1-238	ENST00000534647	TLE2	Q04725	743 aa		13.83	□□□□□ -0.2
CTNND1-238	ENST00000534647	MFSD10	Q14728	455 aa		13.83	□□□□□ -0.2
CTNND1-238	ENST00000534647	MAMDC4	Q6UXC1	1216 aa		13.83	□□□□□ -0.2
CTNND1-238	ENST00000534647	TRIM43	Q96BQ3	446 aa	Predicted RBP	13.83	□□□□□ -0.2
CTNND1-238	ENST00000534647	TOX2	Q96NM4	488 aa		13.83	□□□□□ -0.2
CTNND1-238	ENST00000534647	STRBP	Q96SI9	672 aa	Known RBP	13.83	□□□□□ -0.2
CTNND1-238	ENST00000534647	LRRCC1	Q9C099	1032 aa		13.83	□□□□□ -0.2
CTNND1-238	ENST00000534647	SYNPO2	Q9UMS6	1093 aa		13.83	□□□□□ -0.2
CTNND1-238	ENST00000534647	SUPT16H	Q9Y5B9	1047 aa	Known RBP	13.83	□□□□□ -0.2
CTNND1-238	ENST00000534647	DNAH12	Q6ZR08	3092 aa		13.83	□□□□□ -0.2
CTNND1-238	ENST00000534647	KIAA0355	O15063	1070 aa		13.82	□□□□□ -0.2
CTNND1-238	ENST00000534647	CHGB	P05060	677 aa		13.82	□□□□□ -0.2
CTNND1-238	ENST00000534647	PGK2	P07205	417 aa		13.82	□□□□□ -0.2
CTNND1-238	ENST00000534647	AKR1A1	P14550	325 aa		13.82	□□□□□ -0.2
CTNND1-238	ENST00000534647	C9orf50	Q5SZB4	431 aa		13.82	□□□□□ -0.2
CTNND1-238	ENST00000534647	FAM83B	Q5T0W9	1011 aa		13.82	□□□□□ -0.2
CTNND1-238	ENST00000534647	SH3RF1	Q7Z6J0	888 aa		13.82	□□□□□ -0.2
CTNND1-238	ENST00000534647	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	13.82	□□□□□ -0.2
CTNND1-238	ENST00000534647	KCTD17	Q8N5Z5	321 aa		13.82	□□□□□ -0.2
CTNND1-238	ENST00000534647	PRPF38A	Q8NAV1	312 aa	Known RBP	13.82	□□□□□ -0.2
CTNND1-238	ENST00000534647	FERMT2	Q96AC1	680 aa		13.82	□□□□□ -0.2
CTNND1-238	ENST00000534647	SLF1	Q9BQI6	1058 aa		13.82	□□□□□ -0.2
CTNND1-238	ENST00000534647	TEX13B	Q9BXU2	312 aa		13.82	□□□□□ -0.2
CTNND1-238	ENST00000534647	SEMA6B	Q9H3T3	888 aa		13.82	□□□□□ -0.2
CTNND1-238	ENST00000534647	LTBP2	Q14767	1821 aa		13.82	□□□□□ -0.2
CTNND1-238	ENST00000534647	SYNGAP1	Q96PV0	1343 aa		13.82	□□□□□ -0.2
CTNND1-238	ENST00000534647	PARP14	Q460N5	1801 aa		13.81	□□□□□ -0.2
CTNND1-238	ENST00000534647	DNAJC25-GNG10	A0A024R161	153 aa		13.81	□□□□□ -0.2
CTNND1-238	ENST00000534647	GSG1L2	A8MUP6	293 aa		13.81	□□□□□ -0.2
CTNND1-238	ENST00000534647	TRAK2	O60296	914 aa		13.81	□□□□□ -0.2
CTNND1-238	ENST00000534647	ADAMTS4	O75173	837 aa		13.81	□□□□□ -0.2
CTNND1-238	ENST00000534647	TAL1	P17542	331 aa	Predicted RBP	13.81	□□□□□ -0.2
CTNND1-238	ENST00000534647	RASA1	P20936	1047 aa		13.81	□□□□□ -0.2
CTNND1-238	ENST00000534647	ANKRD33	Q7Z3H0	272 aa		13.81	□□□□□ -0.2
CTNND1-238	ENST00000534647	MKL1	Q969V6	931 aa		13.81	□□□□□ -0.2
CTNND1-238	ENST00000534647	CDX2	Q99626	313 aa	Predicted RBP	13.81	□□□□□ -0.2
CTNND1-238	ENST00000534647	TRAIP	Q9BWF2	469 aa		13.81	□□□□□ -0.2
CTNND1-238	ENST00000534647	PRDM5	Q9NQX1	630 aa	Predicted RBP	13.81	□□□□□ -0.2
CTNND1-238	ENST00000534647	ECHDC1	Q9NTX5	307 aa		13.81	□□□□□ -0.2
CTNND1-238	ENST00000534647	CNPY2	Q9Y2B0	182 aa		13.81	□□□□□ -0.2
CTNND1-238	ENST00000534647	TMEM265	A0A087WTH1	108 aa		13.8	□□□□□ -0.2
CTNND1-238	ENST00000534647	IGKV6D-41	A0A0C4DH26	115 aa		13.8	□□□□□ -0.2
CTNND1-238	ENST00000534647		A0A1W2PQ45	241 aa	Predicted RBP	13.8	□□□□□ -0.2
CTNND1-238	ENST00000534647		A0A1W2PQY0	241 aa		13.8	□□□□□ -0.2
CTNND1-238	ENST00000534647	MOXD2P	A6NHM9	499 aa		13.8	□□□□□ -0.2
CTNND1-238	ENST00000534647		F5H6K3	240 aa		13.8	□□□□□ -0.2
CTNND1-238	ENST00000534647	PGK1	P00558	417 aa		13.8	□□□□□ -0.2
CTNND1-238	ENST00000534647	CLTB	P09497	229 aa		13.8	□□□□□ -0.2
CTNND1-238	ENST00000534647	ITGB8	P26012	769 aa		13.8	□□□□□ -0.2
CTNND1-238	ENST00000534647	KLRC3	Q07444	240 aa		13.8	□□□□□ -0.2
CTNND1-238	ENST00000534647	CCSAP	Q6IQ19	270 aa	Predicted RBP	13.8	□□□□□ -0.2
CTNND1-238	ENST00000534647	KBTBD3	Q8NAB2	608 aa		13.8	□□□□□ -0.2
CTNND1-238	ENST00000534647	KLHDC9	Q8NEP7	349 aa		13.8	□□□□□ -0.2
CTNND1-238	ENST00000534647	LARP6	Q9BRS8	491 aa	Known RBP	13.8	□□□□□ -0.2
CTNND1-238	ENST00000534647	FAM184B	Q9ULE4	1060 aa		13.8	□□□□□ -0.2
CTNND1-238	ENST00000534647	SNAI1	O95863	264 aa	Predicted RBP	13.79	□□□□□ -0.2
CTNND1-238	ENST00000534647	ZFY	P08048	801 aa	Predicted RBP	13.79	□□□□□ -0.2
CTNND1-238	ENST00000534647	GNAT2	P19087	354 aa		13.79	□□□□□ -0.2
CTNND1-238	ENST00000534647	ACLY	P53396	1101 aa		13.79	□□□□□ -0.2
CTNND1-238	ENST00000534647	FBXO22	Q8NEZ5	403 aa		13.79	□□□□□ -0.2
CTNND1-238	ENST00000534647	NUP133	Q8WUM0	1156 aa		13.79	□□□□□ -0.2
CTNND1-238	ENST00000534647	DDX11	Q96FC9	970 aa		13.79	□□□□□ -0.2
CTNND1-238	ENST00000534647	FAM161B	Q96MY7	647 aa		13.79	□□□□□ -0.2
CTNND1-238	ENST00000534647	COL25A1	Q9BXS0	654 aa	Predicted RBP	13.79	□□□□□ -0.2
CTNND1-238	ENST00000534647	MKNK2	Q9HBH9	465 aa		13.79	□□□□□ -0.2
CTNND1-238	ENST00000534647	ZNF287	Q9HBT7	754 aa		13.79	□□□□□ -0.2
CTNND1-238	ENST00000534647	BAZ2A	Q9UIF9	1905 aa	Known RBP	13.79	□□□□□ -0.2
CTNND1-238	ENST00000534647	ZNFX1	Q9P2E3	1918 aa	Known RBP	13.78	□□□□□ -0.2
CTNND1-238	ENST00000534647	RNF113A	O15541	343 aa	Known RBP	13.78	□□□□□ -0.2
CTNND1-238	ENST00000534647	ZBED4	O75132	1171 aa		13.78	□□□□□ -0.2
CTNND1-238	ENST00000534647	DUSP11	O75319	330 aa	Known RBP	13.78	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 132.8 ms