RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 SHC4Q6S5L8 630 aa12.51□□□□□ -0.41
TRIM3-211ENST00000532542 SNX29Q8TEQ0 813 aa12.51□□□□□ -0.41
TRIM3-211ENST00000532542 MAGEF1Q9HAY2 307 aa12.51□□□□□ -0.41
TRIM3-211ENST00000532542 CTNND2Q9UQB3 1225 aa12.51□□□□□ -0.41
TRIM3-211ENST00000532542 PAXBP1Q9Y5B6 917 aa12.51□□□□□ -0.41
TRIM3-211ENST00000532542 PNMA6FA0A0J9YX94 578 aa12.51□□□□□ -0.41
TRIM3-211ENST00000532542 USP17L5A8MUK1 530 aa12.51□□□□□ -0.41
TRIM3-211ENST00000532542 PDE4DQ08499 809 aa12.51□□□□□ -0.41
TRIM3-211ENST00000532542 CUEDC2Q9H467 287 aa12.51□□□□□ -0.41
TRIM3-211ENST00000532542 STK24Q9Y6E0 443 aa12.51□□□□□ -0.41
TRIM3-211ENST00000532542 TBCAO75347 108 aaKnown RBP12.51□□□□□ -0.41
TRIM3-211ENST00000532542 FBXO11Q86XK2 927 aa12.51□□□□□ -0.41
TRIM3-211ENST00000532542 STAG2Q8N3U4 1231 aa12.51□□□□□ -0.41
TRIM3-211ENST00000532542 FAM163AQ96GL9 167 aaPredicted RBP12.51□□□□□ -0.41
TRIM3-211ENST00000532542 AMNQ9BXJ7 453 aa12.51□□□□□ -0.41
TRIM3-211ENST00000532542 ARGLU1Q9NWB6 273 aaPredicted RBP12.51□□□□□ -0.41
TRIM3-211ENST00000532542 CNTNAP5Q8WYK1 1306 aa12.51□□□□□ -0.41
TRIM3-211ENST00000532542 COL22A1Q8NFW1 1626 aaPredicted RBP12.51□□□□□ -0.41
TRIM3-211ENST00000532542 CLRN2A0PK11 232 aa12.51□□□□□ -0.41
TRIM3-211ENST00000532542 TUBB4AP04350 444 aa12.51□□□□□ -0.41
TRIM3-211ENST00000532542 ERCC5P28715 1186 aaPredicted RBP12.51□□□□□ -0.41
TRIM3-211ENST00000532542 CCT6AP40227 531 aaKnown RBP12.51□□□□□ -0.41
TRIM3-211ENST00000532542 CACNB3P54284 484 aa12.51□□□□□ -0.41
TRIM3-211ENST00000532542 CT47A1Q5JQC4 288 aaPredicted RBP12.51□□□□□ -0.41
TRIM3-211ENST00000532542 CCDC70Q6NSX1 233 aa12.51□□□□□ -0.41
TRIM3-211ENST00000532542 BLZF1Q9H2G9 400 aa12.51□□□□□ -0.41
TRIM3-211ENST00000532542 USH1GQ495M9 461 aa12.5□□□□□ -0.41
TRIM3-211ENST00000532542 KCTD1Q719H9 257 aa12.5□□□□□ -0.41
TRIM3-211ENST00000532542 TBCKQ8TEA7 893 aa12.5□□□□□ -0.41
TRIM3-211ENST00000532542 MTMR4Q9NYA4 1195 aa12.5□□□□□ -0.41
TRIM3-211ENST00000532542 BCS1LQ9Y276 419 aa12.5□□□□□ -0.41
TRIM3-211ENST00000532542 PLCH1Q4KWH8 1693 aa12.5□□□□□ -0.41
TRIM3-211ENST00000532542 AKR1B1P15121 316 aa12.5□□□□□ -0.41
TRIM3-211ENST00000532542 HDLBPQ00341 1268 aaKnown RBP12.5□□□□□ -0.41
TRIM3-211ENST00000532542 CCDC40Q4G0X9 1142 aa12.5□□□□□ -0.41
TRIM3-211ENST00000532542 CEP135Q66GS9 1140 aa12.5□□□□□ -0.41
TRIM3-211ENST00000532542 STXBP4Q6ZWJ1 553 aa12.5□□□□□ -0.41
TRIM3-211ENST00000532542 FCHSD1Q86WN1 690 aa12.5□□□□□ -0.41
TRIM3-211ENST00000532542 EPSTI1Q96J88 318 aa12.5□□□□□ -0.41
TRIM3-211ENST00000532542 ARID3AQ99856 593 aa12.5□□□□□ -0.41
TRIM3-211ENST00000532542 TDRD3Q9H7E2 651 aaKnown RBP12.5□□□□□ -0.41
TRIM3-211ENST00000532542 PIM2Q9P1W9 311 aa12.5□□□□□ -0.41
TRIM3-211ENST00000532542 TMEM232C9JQI7 657 aa12.5□□□□□ -0.41
TRIM3-211ENST00000532542 FOSP01100 380 aaPredicted RBP12.5□□□□□ -0.41
TRIM3-211ENST00000532542 TECP42680 631 aa12.5□□□□□ -0.41
TRIM3-211ENST00000532542 NAP1L1P55209 391 aaKnown RBP12.5□□□□□ -0.41
TRIM3-211ENST00000532542 CDC42EP5Q6NZY7 148 aa12.5□□□□□ -0.41
TRIM3-211ENST00000532542 ENGASEQ8NFI3 743 aa12.5□□□□□ -0.41
TRIM3-211ENST00000532542 FAM217BQ9NTX9 383 aaPredicted RBP12.5□□□□□ -0.41
TRIM3-211ENST00000532542 A0A087WWV3 80 aa12.49□□□□□ -0.41
TRIM3-211ENST00000532542 GDF11O95390 407 aa12.49□□□□□ -0.41
TRIM3-211ENST00000532542 GCFC2P16383 781 aaKnown RBP12.49□□□□□ -0.41
TRIM3-211ENST00000532542 ZYXQ15942 572 aaKnown RBP12.49□□□□□ -0.41
TRIM3-211ENST00000532542 ZNF827Q17R98 1081 aa12.49□□□□□ -0.41
TRIM3-211ENST00000532542 AXDND1Q5T1B0 1012 aaPredicted RBP12.49□□□□□ -0.41
TRIM3-211ENST00000532542 SARM1Q6SZW1 724 aa12.49□□□□□ -0.41
TRIM3-211ENST00000532542 TRMT44Q8IYL2 757 aaKnown RBP12.49□□□□□ -0.41
TRIM3-211ENST00000532542 DCAF4Q8WV16 495 aa12.49□□□□□ -0.41
TRIM3-211ENST00000532542 COA7Q96BR5 231 aa12.49□□□□□ -0.41
TRIM3-211ENST00000532542 BPIFA3Q9BQP9 254 aa12.49□□□□□ -0.41
TRIM3-211ENST00000532542 NT5C3AQ9H0P0 336 aa12.49□□□□□ -0.41
TRIM3-211ENST00000532542 DALRD3Q5D0E6 543 aaKnown RBP12.49□□□□□ -0.41
TRIM3-211ENST00000532542 NOC3LQ8WTT2 800 aaKnown RBP12.49□□□□□ -0.41
TRIM3-211ENST00000532542 FANCLQ9NW38 375 aa12.49□□□□□ -0.41
TRIM3-211ENST00000532542 FBXO2Q9UK22 296 aaPredicted RBP12.49□□□□□ -0.41
TRIM3-211ENST00000532542 ABCA3Q99758 1704 aa12.49□□□□□ -0.41
TRIM3-211ENST00000532542 MYL1P05976 194 aa12.49□□□□□ -0.41
TRIM3-211ENST00000532542 SLC16A2P36021 539 aa12.49□□□□□ -0.41
TRIM3-211ENST00000532542 KARSQ15046 597 aaKnown RBP12.49□□□□□ -0.41
TRIM3-211ENST00000532542 CCDC65Q8IXS2 484 aa12.49□□□□□ -0.41
TRIM3-211ENST00000532542 MAN1B1Q9UKM7 699 aa12.49□□□□□ -0.41
TRIM3-211ENST00000532542 ITGB4P16144 1822 aa12.49□□□□□ -0.41
TRIM3-211ENST00000532542 KIF5CO60282 957 aa12.48□□□□□ -0.41
TRIM3-211ENST00000532542 SMARCA1P28370 1054 aa12.48□□□□□ -0.41
TRIM3-211ENST00000532542 CACNA2D4Q7Z3S7 1137 aa12.48□□□□□ -0.41
TRIM3-211ENST00000532542 PCDHA12Q9UN75 941 aa12.48□□□□□ -0.41
TRIM3-211ENST00000532542 BMP3P12645 472 aa12.48□□□□□ -0.41
TRIM3-211ENST00000532542 TRIM21P19474 475 aaKnown RBP12.48□□□□□ -0.41
TRIM3-211ENST00000532542 ATP2C1P98194 919 aaPredicted RBP12.48□□□□□ -0.41
TRIM3-211ENST00000532542 EZH2Q15910 746 aaKnown RBP12.48□□□□□ -0.41
TRIM3-211ENST00000532542 SPATA1Q5VX52 437 aa12.48□□□□□ -0.41
TRIM3-211ENST00000532542 PPP1R18Q6NYC8 613 aa12.48□□□□□ -0.41
TRIM3-211ENST00000532542 CPVLQ9H3G5 476 aa12.48□□□□□ -0.41
TRIM3-211ENST00000532542 DDX25Q9UHL0 483 aaKnown RBP12.48□□□□□ -0.41
TRIM3-211ENST00000532542 UBR2Q8IWV8 1755 aa12.48□□□□□ -0.41
TRIM3-211ENST00000532542 KDM3AQ9Y4C1 1321 aa12.48□□□□□ -0.41
TRIM3-211ENST00000532542 RPN1P04843 607 aaKnown RBP12.48□□□□□ -0.41
TRIM3-211ENST00000532542 ORC2Q13416 577 aaPredicted RBP12.48□□□□□ -0.41
TRIM3-211ENST00000532542 CNGA4Q8IV77 575 aa12.48□□□□□ -0.41
TRIM3-211ENST00000532542 SLC16A10Q8TF71 515 aa12.48□□□□□ -0.41
TRIM3-211ENST00000532542 SERPINA10Q9UK55 444 aa12.48□□□□□ -0.41
TRIM3-211ENST00000532542 MAPK8IP1Q9UQF2 711 aa12.48□□□□□ -0.41
TRIM3-211ENST00000532542 CIAPIN1Q6FI81 312 aa12.48□□□□□ -0.41
TRIM3-211ENST00000532542 RBM43Q6ZSC3 357 aaKnown RBP12.48□□□□□ -0.41
TRIM3-211ENST00000532542 KIAA1328Q86T90 577 aa12.48□□□□□ -0.41
TRIM3-211ENST00000532542 NELFBQ8WX92 580 aa12.48□□□□□ -0.41
TRIM3-211ENST00000532542 SAMM50Q9Y512 469 aa12.48□□□□□ -0.41
TRIM3-211ENST00000532542 NWD2Q9ULI1 1742 aa12.47□□□□□ -0.41
TRIM3-211ENST00000532542 CRYBG1Q9Y4K1 1723 aa12.47□□□□□ -0.41
TRIM3-211ENST00000532542 H7C1D1 291 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms