RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 GRM4Q14833 912 aa16.92■□□□□ 0.3
CPSF1-206ENST00000531480 ERO1AQ96HE7 468 aa16.92■□□□□ 0.3
CPSF1-206ENST00000531480 SLC38A10Q9HBR0 1119 aa16.92■□□□□ 0.3
CPSF1-206ENST00000531480 ZNF214Q9UL59 606 aaPredicted RBP16.92■□□□□ 0.3
CPSF1-206ENST00000531480 PLXNB2O15031 1838 aa16.91■□□□□ 0.3
CPSF1-206ENST00000531480 HTTP42858 3142 aa16.91■□□□□ 0.3
CPSF1-206ENST00000531480 CPA1P15085 419 aa16.91■□□□□ 0.3
CPSF1-206ENST00000531480 RCAN1P53805 252 aa16.91■□□□□ 0.3
CPSF1-206ENST00000531480 OAZ1P54368 228 aa16.91■□□□□ 0.3
CPSF1-206ENST00000531480 TMEM132BQ14DG7 1078 aa16.91■□□□□ 0.3
CPSF1-206ENST00000531480 TTBK2Q6IQ55 1244 aa16.91■□□□□ 0.3
CPSF1-206ENST00000531480 ZNF654Q8IZM8 581 aa16.91■□□□□ 0.3
CPSF1-206ENST00000531480 TCEANC2Q96MN5 208 aa16.91■□□□□ 0.3
CPSF1-206ENST00000531480 LRRC2Q9BYS8 371 aa16.91■□□□□ 0.3
CPSF1-206ENST00000531480 BACH2Q9BYV9 841 aa16.91■□□□□ 0.3
CPSF1-206ENST00000531480 ALDH8A1Q9H2A2 487 aaPredicted RBP16.91■□□□□ 0.3
CPSF1-206ENST00000531480 MAD2L2Q9UI95 211 aa16.91■□□□□ 0.3
CPSF1-206ENST00000531480 ZNF236Q9UL36 1845 aa16.91■□□□□ 0.3
CPSF1-206ENST00000531480 NID2Q14112 1375 aa16.9■□□□□ 0.3
CPSF1-206ENST00000531480 PEX10O60683 326 aa16.9■□□□□ 0.3
CPSF1-206ENST00000531480 GNRH1P01148 92 aa16.9■□□□□ 0.3
CPSF1-206ENST00000531480 PARP1P09874 1014 aaKnown RBP16.9■□□□□ 0.3
CPSF1-206ENST00000531480 CCDC96Q2M329 555 aa16.9■□□□□ 0.3
CPSF1-206ENST00000531480 APOA5Q6Q788 366 aa16.9■□□□□ 0.3
CPSF1-206ENST00000531480 CATIPQ7Z7H3 387 aa16.9■□□□□ 0.3
CPSF1-206ENST00000531480 SHCBP1Q8NEM2 672 aa16.9■□□□□ 0.3
CPSF1-206ENST00000531480 KIF2CQ99661 725 aa16.9■□□□□ 0.3
CPSF1-206ENST00000531480 SPATC1LQ9H0A9 340 aa16.9■□□□□ 0.3
CPSF1-206ENST00000531480 RANBP17Q9H2T7 1088 aaKnown RBP16.9■□□□□ 0.3
CPSF1-206ENST00000531480 PRR12Q9ULL5 1215 aa16.9■□□□□ 0.3
CPSF1-206ENST00000531480 CYP46A1Q9Y6A2 500 aa16.9■□□□□ 0.3
CPSF1-206ENST00000531480 FRMPD2Q68DX3 1309 aaPredicted RBP16.9■□□□□ 0.3
CPSF1-206ENST00000531480 CALM1P0DP23 149 aa16.89■□□□□ 0.29
CPSF1-206ENST00000531480 CALM2P0DP24 149 aa16.89■□□□□ 0.29
CPSF1-206ENST00000531480 CALM3P0DP25 149 aa16.89■□□□□ 0.29
CPSF1-206ENST00000531480 Q6ZUG5 572 aa16.89■□□□□ 0.29
CPSF1-206ENST00000531480 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.89■□□□□ 0.29
CPSF1-206ENST00000531480 STAG2Q8N3U4 1231 aa16.89■□□□□ 0.29
CPSF1-206ENST00000531480 CD99L2Q8TCZ2 262 aa16.89■□□□□ 0.29
CPSF1-206ENST00000531480 MTMR8Q96EF0 704 aa16.89■□□□□ 0.29
CPSF1-206ENST00000531480 TRIM47Q96LD4 638 aa16.89■□□□□ 0.29
CPSF1-206ENST00000531480 PAGR1Q9BTK6 254 aa16.89■□□□□ 0.29
CPSF1-206ENST00000531480 ARHGAP39Q9C0H5 1083 aa16.89■□□□□ 0.29
CPSF1-206ENST00000531480 BRPF3Q9ULD4 1205 aa16.89■□□□□ 0.29
CPSF1-206ENST00000531480 ZNF536O15090 1300 aa16.89■□□□□ 0.29
CPSF1-206ENST00000531480 SMCHD1A6NHR9 2005 aa16.89■□□□□ 0.29
CPSF1-206ENST00000531480 CCDC69A6NI79 296 aa16.88■□□□□ 0.29
CPSF1-206ENST00000531480 GOLGA8HP0CJ92 632 aa16.88■□□□□ 0.29
CPSF1-206ENST00000531480 SMARCA1P28370 1054 aa16.88■□□□□ 0.29
CPSF1-206ENST00000531480 MAPK4P31152 587 aa16.88■□□□□ 0.29
CPSF1-206ENST00000531480 CCNA1P78396 465 aa16.88■□□□□ 0.29
CPSF1-206ENST00000531480 TOB2Q14106 344 aaPredicted RBP16.88■□□□□ 0.29
CPSF1-206ENST00000531480 SYDE2Q5VT97 1194 aa16.88■□□□□ 0.29
CPSF1-206ENST00000531480 RIOX2Q8IUF8 465 aa16.88■□□□□ 0.29
CPSF1-206ENST00000531480 KIFC2Q96AC6 838 aa16.88■□□□□ 0.29
CPSF1-206ENST00000531480 MOV10L1Q9BXT6 1211 aaKnown RBP16.88■□□□□ 0.29
CPSF1-206ENST00000531480 C22orf23Q9BZE7 217 aa16.88■□□□□ 0.29
CPSF1-206ENST00000531480 PORCNQ9H237 461 aa16.88■□□□□ 0.29
CPSF1-206ENST00000531480 GPCPD1Q9NPB8 672 aa16.88■□□□□ 0.29
CPSF1-206ENST00000531480 MTMR7Q9Y216 660 aa16.88■□□□□ 0.29
CPSF1-206ENST00000531480 SLC12A7Q9Y666 1083 aa16.88■□□□□ 0.29
CPSF1-206ENST00000531480 MYH6P13533 1939 aa16.88■□□□□ 0.29
CPSF1-206ENST00000531480 ZBED4O75132 1171 aa16.87■□□□□ 0.29
CPSF1-206ENST00000531480 SLC25A27O95847 323 aa16.87■□□□□ 0.29
CPSF1-206ENST00000531480 SLC16A2P36021 539 aa16.87■□□□□ 0.29
CPSF1-206ENST00000531480 STAT3P40763 770 aa16.87■□□□□ 0.29
CPSF1-206ENST00000531480 PSMC4P43686 418 aa16.87■□□□□ 0.29
CPSF1-206ENST00000531480 FCGRTP55899 365 aa16.87■□□□□ 0.29
CPSF1-206ENST00000531480 KIF22Q14807 665 aa16.87■□□□□ 0.29
CPSF1-206ENST00000531480 ARHGEF6Q15052 776 aa16.87■□□□□ 0.29
CPSF1-206ENST00000531480 SLC35G1Q2M3R5 365 aa16.87■□□□□ 0.29
CPSF1-206ENST00000531480 OTOP1Q7RTM1 612 aa16.87■□□□□ 0.29
CPSF1-206ENST00000531480 CTU1Q7Z7A3 348 aaKnown RBP16.87■□□□□ 0.29
CPSF1-206ENST00000531480 TEX13BQ9BXU2 312 aa16.87■□□□□ 0.29
CPSF1-206ENST00000531480 UPF3BQ9BZI7 483 aaKnown RBP16.87■□□□□ 0.29
CPSF1-206ENST00000531480 RIOX1Q9H6W3 641 aa16.87■□□□□ 0.29
CPSF1-206ENST00000531480 ZNFX1Q9P2E3 1918 aaKnown RBP16.87■□□□□ 0.29
CPSF1-206ENST00000531480 KLRF2D3W0D1 207 aa16.86■□□□□ 0.29
CPSF1-206ENST00000531480 COPB2P35606 906 aa16.86■□□□□ 0.29
CPSF1-206ENST00000531480 PRMT2P55345 433 aa16.86■□□□□ 0.29
CPSF1-206ENST00000531480 NFXL1Q6ZNB6 911 aa16.86■□□□□ 0.29
CPSF1-206ENST00000531480 ADGRF4Q8IZF3 695 aa16.86■□□□□ 0.29
CPSF1-206ENST00000531480 FANCBQ8NB91 859 aa16.86■□□□□ 0.29
CPSF1-206ENST00000531480 BRF1Q92994 677 aa16.86■□□□□ 0.29
CPSF1-206ENST00000531480 CHMP4CQ96CF2 233 aa16.86■□□□□ 0.29
CPSF1-206ENST00000531480 MYL10Q9BUA6 226 aa16.86■□□□□ 0.29
CPSF1-206ENST00000531480 MROH8Q9H579 483 aa16.86■□□□□ 0.29
CPSF1-206ENST00000531480 EFCC1Q9HA90 598 aa16.86■□□□□ 0.29
CPSF1-206ENST00000531480 GJD2Q9UKL4 321 aa16.86■□□□□ 0.29
CPSF1-206ENST00000531480 BAZ2BQ9UIF8 2168 aaKnown RBP16.85■□□□□ 0.29
CPSF1-206ENST00000531480 CYTH3O43739 400 aa16.85■□□□□ 0.29
CPSF1-206ENST00000531480 ICAM1P05362 532 aa16.85■□□□□ 0.29
CPSF1-206ENST00000531480 KIF5BP33176 963 aa16.85■□□□□ 0.29
CPSF1-206ENST00000531480 IKQ13123 557 aaPredicted RBP16.85■□□□□ 0.29
CPSF1-206ENST00000531480 PPP2R5BQ15173 497 aa16.85■□□□□ 0.29
CPSF1-206ENST00000531480 PKN2Q16513 984 aaKnown RBP16.85■□□□□ 0.29
CPSF1-206ENST00000531480 GPR142Q7Z601 462 aa16.85■□□□□ 0.29
CPSF1-206ENST00000531480 NBPF11Q86T75 865 aa16.85■□□□□ 0.29
CPSF1-206ENST00000531480 IL27Q8NEV9 243 aa16.85■□□□□ 0.29
CPSF1-206ENST00000531480 CTCFLQ8NI51 663 aaPredicted RBP16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms