RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 PHF6Q8IWS0 365 aaKnown RBP eCLIP28.22■■■□□ 2.11
CPSF1-202ENST00000527827 KBTBD3Q8NAB2 608 aa28.22■■■□□ 2.11
CPSF1-202ENST00000527827 SEMA6BQ9H3T3 888 aa28.22■■■□□ 2.11
CPSF1-202ENST00000527827 MKNK2Q9HBH9 465 aa28.22■■■□□ 2.11
CPSF1-202ENST00000527827 MINDY4BA8MYZ0 360 aa28.21■■■□□ 2.11
CPSF1-202ENST00000527827 CLTBP09497 229 aa28.21■■■□□ 2.11
CPSF1-202ENST00000527827 SNRNP48Q6IEG0 339 aaKnown RBP28.21■■■□□ 2.11
CPSF1-202ENST00000527827 CDX2Q99626 313 aaPredicted RBP28.21■■■□□ 2.11
CPSF1-202ENST00000527827 CNPY2Q9Y2B0 182 aa28.21■■■□□ 2.11
CPSF1-202ENST00000527827 DNAJC25-GNG10A0A024R161 153 aa28.2■■■□□ 2.1
CPSF1-202ENST00000527827 IGKV6D-41A0A0C4DH26 115 aa28.2■■■□□ 2.1
CPSF1-202ENST00000527827 KIAA0355O15063 1070 aa28.2■■■□□ 2.1
CPSF1-202ENST00000527827 SNAI1O95863 264 aaPredicted RBP28.2■■■□□ 2.1
CPSF1-202ENST00000527827 SMAD3P84022 425 aaKnown RBP28.2■■■□□ 2.1
CPSF1-202ENST00000527827 MSL3Q8N5Y2 521 aaKnown RBP28.2■■■□□ 2.1
CPSF1-202ENST00000527827 PRPF38AQ8NAV1 312 aaKnown RBP28.2■■■□□ 2.1
CPSF1-202ENST00000527827 APPBP2Q92624 585 aa28.2■■■□□ 2.1
CPSF1-202ENST00000527827 COL25A1Q9BXS0 654 aaPredicted RBP28.2■■■□□ 2.1
CPSF1-202ENST00000527827 EPB41L4AQ9HCS5 686 aaPredicted RBP28.2■■■□□ 2.1
CPSF1-202ENST00000527827 SYNGAP1Q96PV0 1343 aa28.19■■■□□ 2.1
CPSF1-202ENST00000527827 PQBP1O60828 265 aaKnown RBP28.19■■■□□ 2.1
CPSF1-202ENST00000527827 EPHB4P54760 987 aa28.19■■■□□ 2.1
CPSF1-202ENST00000527827 MAMDC4Q6UXC1 1216 aa28.19■■■□□ 2.1
CPSF1-202ENST00000527827 TSEN34Q9BSV6 310 aaKnown RBP28.19■■■□□ 2.1
CPSF1-202ENST00000527827 CLIP2Q9UDT6 1046 aa28.19■■■□□ 2.1
CPSF1-202ENST00000527827 MCM3APO60318 1980 aa28.19■■■□□ 2.1
CPSF1-202ENST00000527827 SYNRGQ9UMZ2 1314 aa28.18■■■□□ 2.1
CPSF1-202ENST00000527827 ATP2A1O14983 1001 aa28.18■■■□□ 2.1
CPSF1-202ENST00000527827 RNF113AO15541 343 aaKnown RBP28.18■■■□□ 2.1
CPSF1-202ENST00000527827 TSHZ3Q63HK5 1081 aa28.18■■■□□ 2.1
CPSF1-202ENST00000527827 DDX11Q96FC9 970 aa28.18■■■□□ 2.1
CPSF1-202ENST00000527827 TTYH1Q9H313 450 aaPredicted RBP28.18■■■□□ 2.1
CPSF1-202ENST00000527827 GPAA1O43292 621 aa28.17■■■□□ 2.1
CPSF1-202ENST00000527827 ACLYP53396 1101 aa28.17■■■□□ 2.1
CPSF1-202ENST00000527827 CPXCR1Q8N123 301 aa28.17■■■□□ 2.1
CPSF1-202ENST00000527827 KLHDC9Q8NEP7 349 aa28.17■■■□□ 2.1
CPSF1-202ENST00000527827 FAM184BQ9ULE4 1060 aa28.17■■■□□ 2.1
CPSF1-202ENST00000527827 EYSQ5T1H1 3165 aa28.17■■■□□ 2.1
CPSF1-202ENST00000527827 RAG1P15918 1043 aa28.16■■■□□ 2.1
CPSF1-202ENST00000527827 CCSAPQ6IQ19 270 aaPredicted RBP28.16■■■□□ 2.1
CPSF1-202ENST00000527827 DHX30Q7L2E3 1194 aaKnown RBP eCLIP28.16■■■□□ 2.1
CPSF1-202ENST00000527827 ANKRD33Q7Z3H0 272 aa28.16■■■□□ 2.1
CPSF1-202ENST00000527827 MKL1Q969V6 931 aa28.16■■■□□ 2.1
CPSF1-202ENST00000527827 DCTPP1Q9H773 170 aa28.16■■■□□ 2.1
CPSF1-202ENST00000527827 M0R2C6 588 aa28.15■■■□□ 2.1
CPSF1-202ENST00000527827 ZBED4O75132 1171 aa28.15■■■□□ 2.1
CPSF1-202ENST00000527827 PRDM1O75626 825 aa28.15■■■□□ 2.1
CPSF1-202ENST00000527827 SLC4A3P48751 1232 aa28.15■■■□□ 2.1
CPSF1-202ENST00000527827 FAAP100Q0VG06 881 aa28.15■■■□□ 2.1
CPSF1-202ENST00000527827 ZNF467Q7Z7K2 595 aaPredicted RBP28.15■■■□□ 2.1
CPSF1-202ENST00000527827 KIFC2Q96AC6 838 aa28.15■■■□□ 2.1
CPSF1-202ENST00000527827 CEP95Q96GE4 821 aa28.15■■■□□ 2.1
CPSF1-202ENST00000527827 FGD4Q96M96 766 aa28.15■■■□□ 2.1
CPSF1-202ENST00000527827 TOX2Q96NM4 488 aa28.15■■■□□ 2.1
CPSF1-202ENST00000527827 SLC38A10Q9HBR0 1119 aa28.15■■■□□ 2.1
CPSF1-202ENST00000527827 RAVER2Q9HCJ3 691 aaKnown RBP28.15■■■□□ 2.1
CPSF1-202ENST00000527827 STARD7Q9NQZ5 370 aa28.15■■■□□ 2.1
CPSF1-202ENST00000527827 TMEM39AQ9NV64 488 aa28.15■■■□□ 2.1
CPSF1-202ENST00000527827 ZHX1Q9UKY1 873 aaPredicted RBP28.15■■■□□ 2.1
CPSF1-202ENST00000527827 MYADML2A6NDP7 307 aa28.14■■■□□ 2.1
CPSF1-202ENST00000527827 TDO2P48775 406 aa28.14■■■□□ 2.1
CPSF1-202ENST00000527827 KCNA10Q16322 511 aa28.14■■■□□ 2.1
CPSF1-202ENST00000527827 ZNF444Q8N0Y2 327 aaPredicted RBP28.14■■■□□ 2.1
CPSF1-202ENST00000527827 RNPC3Q96LT9 517 aaKnown RBP28.14■■■□□ 2.1
CPSF1-202ENST00000527827 MTMR4Q9NYA4 1195 aa28.14■■■□□ 2.1
CPSF1-202ENST00000527827 MOXD2PA6NHM9 499 aa28.13■■■□□ 2.09
CPSF1-202ENST00000527827 DUSP11O75319 330 aaKnown RBP28.13■■■□□ 2.09
CPSF1-202ENST00000527827 ZFYP08048 801 aaPredicted RBP28.13■■■□□ 2.09
CPSF1-202ENST00000527827 GNAT2P19087 354 aa28.13■■■□□ 2.09
CPSF1-202ENST00000527827 IRX5P78411 483 aaPredicted RBP28.13■■■□□ 2.09
CPSF1-202ENST00000527827 FPGSQ05932 587 aa28.13■■■□□ 2.09
CPSF1-202ENST00000527827 NUP133Q8WUM0 1156 aa28.13■■■□□ 2.09
CPSF1-202ENST00000527827 MYLIPQ8WY64 445 aa28.13■■■□□ 2.09
CPSF1-202ENST00000527827 GPATCH3Q96I76 525 aa28.13■■■□□ 2.09
CPSF1-202ENST00000527827 CDH23Q9H251 3354 aa28.12■■■□□ 2.09
CPSF1-202ENST00000527827 ADCY6O43306 1168 aa28.12■■■□□ 2.09
CPSF1-202ENST00000527827 ACVR2BQ13705 512 aa28.12■■■□□ 2.09
CPSF1-202ENST00000527827 LRRC47Q8N1G4 583 aaKnown RBP28.12■■■□□ 2.09
CPSF1-202ENST00000527827 MAFAQ8NHW3 353 aaPredicted RBP28.12■■■□□ 2.09
CPSF1-202ENST00000527827 ZNF287Q9HBT7 754 aa28.12■■■□□ 2.09
CPSF1-202ENST00000527827 CDKN2AIPQ9NXV6 580 aaPredicted RBP28.12■■■□□ 2.09
CPSF1-202ENST00000527827 FEM1BQ9UK73 627 aa28.12■■■□□ 2.09
CPSF1-202ENST00000527827 SYNPO2Q9UMS6 1093 aa28.12■■■□□ 2.09
CPSF1-202ENST00000527827 CTDP1Q9Y5B0 961 aaPredicted RBP28.12■■■□□ 2.09
CPSF1-202ENST00000527827 DCDC2CA8MYV0 355 aa28.11■■■□□ 2.09
CPSF1-202ENST00000527827 PATL2C9JE40 543 aaKnown RBP28.11■■■□□ 2.09
CPSF1-202ENST00000527827 APPP05067 770 aa28.11■■■□□ 2.09
CPSF1-202ENST00000527827 CST5P28325 142 aaPredicted RBP28.11■■■□□ 2.09
CPSF1-202ENST00000527827 IFNL3Q8IZI9 196 aa28.11■■■□□ 2.09
CPSF1-202ENST00000527827 GMCL1P1Q8NEA9 526 aa28.11■■■□□ 2.09
CPSF1-202ENST00000527827 TTLL1O95922 423 aa28.1■■■□□ 2.09
CPSF1-202ENST00000527827 ANKRD35Q8N283 1001 aa28.1■■■□□ 2.09
CPSF1-202ENST00000527827 CHST13Q8NET6 341 aa28.1■■■□□ 2.09
CPSF1-202ENST00000527827 FBXO40Q9UH90 709 aa28.1■■■□□ 2.09
CPSF1-202ENST00000527827 PLIN4Q96Q06 1357 aa28.1■■■□□ 2.09
CPSF1-202ENST00000527827 OAZ1P54368 228 aa28.09■■■□□ 2.09
CPSF1-202ENST00000527827 CCDC144BQ3MJ40 725 aa28.09■■■□□ 2.09
CPSF1-202ENST00000527827 NEDD1Q8NHV4 660 aa28.09■■■□□ 2.09
CPSF1-202ENST00000527827 UPF3AQ9H1J1 476 aaKnown RBP28.09■■■□□ 2.09
CPSF1-202ENST00000527827 ABHD16BQ9H3Z7 469 aa28.09■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms