RNA–Protein interactions for RNA: ENST00000527046.5

NEDD8-205, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 847 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-205ENST00000527046 ERICH2A1L162 156 aa12.59□□□□□ -0.39
NEDD8-205ENST00000527046 VWA5AO00534 786 aa12.59□□□□□ -0.39
NEDD8-205ENST00000527046 FLOT1O75955 427 aa12.59□□□□□ -0.39
NEDD8-205ENST00000527046 DDAH1O94760 285 aa12.59□□□□□ -0.39
NEDD8-205ENST00000527046 LARGE1O95461 756 aa12.59□□□□□ -0.39
NEDD8-205ENST00000527046 OSBPP22059 807 aa12.59□□□□□ -0.39
NEDD8-205ENST00000527046 SNAP25P60880 206 aa12.59□□□□□ -0.39
NEDD8-205ENST00000527046 TMEM132BQ14DG7 1078 aa12.59□□□□□ -0.39
NEDD8-205ENST00000527046 NTRK3Q16288 839 aa12.59□□□□□ -0.39
NEDD8-205ENST00000527046 OTUD7BQ6GQQ9 843 aa12.59□□□□□ -0.39
NEDD8-205ENST00000527046 CMTR1Q8N1G2 835 aaKnown RBP12.59□□□□□ -0.39
NEDD8-205ENST00000527046 SRBD1Q8N5C6 995 aaKnown RBP12.59□□□□□ -0.39
NEDD8-205ENST00000527046 PRPF38AQ8NAV1 312 aaKnown RBP12.59□□□□□ -0.39
NEDD8-205ENST00000527046 PARK7Q99497 189 aaKnown RBP12.59□□□□□ -0.39
NEDD8-205ENST00000527046 SLF1Q9BQI6 1058 aa12.59□□□□□ -0.39
NEDD8-205ENST00000527046 TANGO6Q9C0B7 1094 aa12.59□□□□□ -0.39
NEDD8-205ENST00000527046 RIOX1Q9H6W3 641 aa12.59□□□□□ -0.39
NEDD8-205ENST00000527046 JMJD4Q9H9V9 463 aa12.59□□□□□ -0.39
NEDD8-205ENST00000527046 SLC38A10Q9HBR0 1119 aa12.59□□□□□ -0.39
NEDD8-205ENST00000527046 ZFYVE28Q9HCC9 887 aa12.59□□□□□ -0.39
NEDD8-205ENST00000527046 ZNF214Q9UL59 606 aaPredicted RBP12.59□□□□□ -0.39
NEDD8-205ENST00000527046 ZSWIM8A7E2V4 1837 aa12.59□□□□□ -0.39
NEDD8-205ENST00000527046 MYPNQ86TC9 1320 aa12.59□□□□□ -0.39
NEDD8-205ENST00000527046 BAZ2BQ9UIF8 2168 aaKnown RBP12.59□□□□□ -0.39
NEDD8-205ENST00000527046 NID2Q14112 1375 aa12.58□□□□□ -0.4
NEDD8-205ENST00000527046 CCDC69A6NI79 296 aa12.58□□□□□ -0.4
NEDD8-205ENST00000527046 KLRF2D3W0D1 207 aa12.58□□□□□ -0.4
NEDD8-205ENST00000527046 GPR25O00155 361 aa12.58□□□□□ -0.4
NEDD8-205ENST00000527046 PLEKHA8P1O95397 391 aa12.58□□□□□ -0.4
NEDD8-205ENST00000527046 PARP1P09874 1014 aaKnown RBP12.58□□□□□ -0.4
NEDD8-205ENST00000527046 HSPA1AP0DMV8 641 aaKnown RBP12.58□□□□□ -0.4
NEDD8-205ENST00000527046 HSPA1BP0DMV9 641 aaKnown RBP12.58□□□□□ -0.4
NEDD8-205ENST00000527046 HSPA8P11142 646 aaKnown RBP12.58□□□□□ -0.4
NEDD8-205ENST00000527046 ADD1P35611 737 aaKnown RBP12.58□□□□□ -0.4
NEDD8-205ENST00000527046 IRX3P78415 501 aaPredicted RBP12.58□□□□□ -0.4
NEDD8-205ENST00000527046 PABPC4Q13310 644 aaKnown RBP eCLIP12.58□□□□□ -0.45e-9■■■■□ 19.8
NEDD8-205ENST00000527046 ASPRV1Q53RT3 343 aa12.58□□□□□ -0.4
NEDD8-205ENST00000527046 NOM1Q5C9Z4 860 aaKnown RBP12.58□□□□□ -0.4
NEDD8-205ENST00000527046 CATIPQ7Z7H3 387 aa12.58□□□□□ -0.4
NEDD8-205ENST00000527046 CCDC144CPQ8IYA2 1237 aa12.58□□□□□ -0.4
NEDD8-205ENST00000527046 ANKRD13CQ8N6S4 541 aa12.58□□□□□ -0.4
NEDD8-205ENST00000527046 ZNF274Q96GC6 653 aaPredicted RBP12.58□□□□□ -0.4
NEDD8-205ENST00000527046 RIPK3Q9Y572 518 aa12.58□□□□□ -0.4
NEDD8-205ENST00000527046 SLC12A7Q9Y666 1083 aa12.58□□□□□ -0.4
NEDD8-205ENST00000527046 DOCK3Q8IZD9 2030 aa12.57□□□□□ -0.4
NEDD8-205ENST00000527046 ATP2A1O14983 1001 aa12.57□□□□□ -0.4
NEDD8-205ENST00000527046 PPP1R11O60927 126 aaPredicted RBP12.57□□□□□ -0.4
NEDD8-205ENST00000527046 DTNBO60941 627 aa12.57□□□□□ -0.4
NEDD8-205ENST00000527046 TAL1P17542 331 aaPredicted RBP12.57□□□□□ -0.4
NEDD8-205ENST00000527046 GCLCP48506 637 aaPredicted RBP12.57□□□□□ -0.4
NEDD8-205ENST00000527046 STAT2P52630 851 aa12.57□□□□□ -0.4
NEDD8-205ENST00000527046 RCAN1P53805 252 aa12.57□□□□□ -0.4
NEDD8-205ENST00000527046 ME3Q16798 604 aa12.57□□□□□ -0.4
NEDD8-205ENST00000527046 CCDC96Q2M329 555 aa12.57□□□□□ -0.4
NEDD8-205ENST00000527046 GPATCH4Q5T3I0 446 aaKnown RBP12.57□□□□□ -0.4
NEDD8-205ENST00000527046 SYDE2Q5VT97 1194 aa12.57□□□□□ -0.4
NEDD8-205ENST00000527046 NFXL1Q6ZNB6 911 aa12.57□□□□□ -0.4
NEDD8-205ENST00000527046 FAM160B2Q86V87 743 aa12.57□□□□□ -0.4
NEDD8-205ENST00000527046 ADGRF4Q8IZF3 695 aa12.57□□□□□ -0.4
NEDD8-205ENST00000527046 CHURC1Q8WUH1 139 aa12.57□□□□□ -0.4
NEDD8-205ENST00000527046 NUP133Q8WUM0 1156 aa12.57□□□□□ -0.4
NEDD8-205ENST00000527046 KIFC2Q96AC6 838 aa12.57□□□□□ -0.4
NEDD8-205ENST00000527046 ARHGAP39Q9C0H5 1083 aa12.57□□□□□ -0.4
NEDD8-205ENST00000527046 PORCNQ9H237 461 aa12.57□□□□□ -0.4
NEDD8-205ENST00000527046 RANBP17Q9H2T7 1088 aaKnown RBP12.57□□□□□ -0.4
NEDD8-205ENST00000527046 PNMA3Q9UL41 463 aa12.57□□□□□ -0.4
NEDD8-205ENST00000527046 RABGAP1Q9Y3P9 1069 aa12.57□□□□□ -0.4
NEDD8-205ENST00000527046 ZBTB43O43298 467 aa12.56□□□□□ -0.4
NEDD8-205ENST00000527046 SMARCA1P28370 1054 aa12.56□□□□□ -0.4
NEDD8-205ENST00000527046 ERVK-9P63128 1117 aa12.56□□□□□ -0.4
NEDD8-205ENST00000527046 ERVK-24P63145 666 aa12.56□□□□□ -0.4
NEDD8-205ENST00000527046 FAM110CQ1W6H9 321 aa12.56□□□□□ -0.4
NEDD8-205ENST00000527046 TMTC3Q6ZXV5 915 aa12.56□□□□□ -0.4
NEDD8-205ENST00000527046 MICU3Q86XE3 530 aa12.56□□□□□ -0.4
NEDD8-205ENST00000527046 ZNF296Q8WUU4 475 aaPredicted RBP12.56□□□□□ -0.4
NEDD8-205ENST00000527046 AGBL1Q96MI9 1066 aa12.56□□□□□ -0.4
NEDD8-205ENST00000527046 MOV10L1Q9BXT6 1211 aaKnown RBP12.56□□□□□ -0.4
NEDD8-205ENST00000527046 NCOA5Q9HCD5 579 aaKnown RBP12.56□□□□□ -0.4
NEDD8-205ENST00000527046 RAVER2Q9HCJ3 691 aaKnown RBP12.56□□□□□ -0.4
NEDD8-205ENST00000527046 PCNTO95613 3336 aa12.55□□□□□ -0.4
NEDD8-205ENST00000527046 PLXNB2O15031 1838 aa12.55□□□□□ -0.4
NEDD8-205ENST00000527046 PFKFB2O60825 505 aa12.55□□□□□ -0.4
NEDD8-205ENST00000527046 CTDNEP1O95476 244 aa12.55□□□□□ -0.4
NEDD8-205ENST00000527046 CALM1P0DP23 149 aa12.55□□□□□ -0.4
NEDD8-205ENST00000527046 CALM2P0DP24 149 aa12.55□□□□□ -0.4
NEDD8-205ENST00000527046 CALM3P0DP25 149 aa12.55□□□□□ -0.4
NEDD8-205ENST00000527046 CCT2P78371 535 aaKnown RBP12.55□□□□□ -0.4
NEDD8-205ENST00000527046 SCRN1Q12765 414 aa12.55□□□□□ -0.4
NEDD8-205ENST00000527046 RABEP1Q15276 862 aa12.55□□□□□ -0.4
NEDD8-205ENST00000527046 RIOX2Q8IUF8 465 aa12.55□□□□□ -0.4
NEDD8-205ENST00000527046 SMCR8Q8TEV9 937 aaPredicted RBP12.55□□□□□ -0.4
NEDD8-205ENST00000527046 SHISA4Q96DD7 197 aa12.55□□□□□ -0.4
NEDD8-205ENST00000527046 PAGR1Q9BTK6 254 aa12.55□□□□□ -0.4
NEDD8-205ENST00000527046 SPATC1LQ9H0A9 340 aa12.55□□□□□ -0.4
NEDD8-205ENST00000527046 EFCC1Q9HA90 598 aa12.55□□□□□ -0.4
NEDD8-205ENST00000527046 UPF2Q9HAU5 1272 aaKnown RBP12.55□□□□□ -0.4
NEDD8-205ENST00000527046 VAT1LQ9HCJ6 419 aa12.55□□□□□ -0.4
NEDD8-205ENST00000527046 CASP8AP2Q9UKL3 1982 aa12.55□□□□□ -0.4
NEDD8-205ENST00000527046 MGAMO43451 1857 aa12.55□□□□□ -0.4
NEDD8-205ENST00000527046 LBX1P52954 281 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms