RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 SYNRGQ9UMZ2 1314 aa17.18■□□□□ 0.34
CPSF1-201ENST00000526271 MYO9BQ13459 2157 aa17.18■□□□□ 0.34
CPSF1-201ENST00000526271 CTAGE5O15320 804 aa17.17■□□□□ 0.34
CPSF1-201ENST00000526271 NDUFB10O96000 172 aa17.17■□□□□ 0.34
CPSF1-201ENST00000526271 FAAP100Q0VG06 881 aa17.17■□□□□ 0.34
CPSF1-201ENST00000526271 STK11IPQ8N1F8 1099 aa17.17■□□□□ 0.34
CPSF1-201ENST00000526271 CLTBP09497 229 aa17.16■□□□□ 0.34
CPSF1-201ENST00000526271 RARBP10826 455 aa17.16■□□□□ 0.34
CPSF1-201ENST00000526271 PTGS1P23219 599 aa17.16■□□□□ 0.34
CPSF1-201ENST00000526271 SMAD3P84022 425 aaKnown RBP17.16■□□□□ 0.34
CPSF1-201ENST00000526271 SBK1Q52WX2 424 aa17.16■□□□□ 0.34
CPSF1-201ENST00000526271 C16orf59Q7L2K0 433 aa17.16■□□□□ 0.34
CPSF1-201ENST00000526271 KATNBL1Q9H079 304 aa17.16■□□□□ 0.34
CPSF1-201ENST00000526271 SH2D4AQ9H788 454 aa17.16■□□□□ 0.34
CPSF1-201ENST00000526271 PRKAG2Q9UGJ0 569 aa17.16■□□□□ 0.34
CPSF1-201ENST00000526271 DDX19BQ9UMR2 479 aa17.16■□□□□ 0.34
CPSF1-201ENST00000526271 PQBP1O60828 265 aaKnown RBP17.15■□□□□ 0.34
CPSF1-201ENST00000526271 MAMDC4Q6UXC1 1216 aa17.15■□□□□ 0.34
CPSF1-201ENST00000526271 ANKRD33Q7Z3H0 272 aa17.15■□□□□ 0.34
CPSF1-201ENST00000526271 USP38Q8NB14 1042 aa17.15■□□□□ 0.34
CPSF1-201ENST00000526271 SLC5A4Q9NY91 659 aa17.15■□□□□ 0.34
CPSF1-201ENST00000526271 DDX49Q9Y6V7 483 aaKnown RBP17.15■□□□□ 0.34
CPSF1-201ENST00000526271 GBF1Q92538 1859 aa17.15■□□□□ 0.34
CPSF1-201ENST00000526271 F5H6K3 240 aa17.14■□□□□ 0.33
CPSF1-201ENST00000526271 M0R2C6 588 aa17.14■□□□□ 0.33
CPSF1-201ENST00000526271 HMMRO75330 724 aa17.14■□□□□ 0.33
CPSF1-201ENST00000526271 AKR1A1P14550 325 aa17.14■□□□□ 0.33
CPSF1-201ENST00000526271 ACLYP53396 1101 aa17.14■□□□□ 0.33
CPSF1-201ENST00000526271 KLRC3Q07444 240 aa17.14■□□□□ 0.33
CPSF1-201ENST00000526271 SNRNP48Q6IEG0 339 aaKnown RBP17.14■□□□□ 0.33
CPSF1-201ENST00000526271 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.14■□□□□ 0.33
CPSF1-201ENST00000526271 MAFAQ8NHW3 353 aaPredicted RBP17.14■□□□□ 0.33
CPSF1-201ENST00000526271 SLF1Q9BQI6 1058 aa17.14■□□□□ 0.33
CPSF1-201ENST00000526271 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.14■□□□□ 0.333e-11■■■■■ 33.7
CPSF1-201ENST00000526271 NYAP2Q9P242 653 aa17.14■□□□□ 0.33
CPSF1-201ENST00000526271 TBX21Q9UL17 535 aa17.14■□□□□ 0.33
CPSF1-201ENST00000526271 TACC3Q9Y6A5 838 aa17.14■□□□□ 0.33
CPSF1-201ENST00000526271 ATP2A1O14983 1001 aa17.13■□□□□ 0.33
CPSF1-201ENST00000526271 PRDM1O75626 825 aa17.13■□□□□ 0.33
CPSF1-201ENST00000526271 CDK7P50613 346 aa17.13■□□□□ 0.33
CPSF1-201ENST00000526271 KCTD2Q14681 263 aa17.13■□□□□ 0.33
CPSF1-201ENST00000526271 GRIN2CQ14957 1233 aa17.13■□□□□ 0.33
CPSF1-201ENST00000526271 RASGRP2Q7LDG7 609 aa17.13■□□□□ 0.33
CPSF1-201ENST00000526271 GOPCQ9HD26 462 aa17.13■□□□□ 0.33
CPSF1-201ENST00000526271 ARPP21Q9UBL0 812 aaPredicted RBP17.13■□□□□ 0.33
CPSF1-201ENST00000526271 ASTN1O14525 1302 aa17.13■□□□□ 0.33
CPSF1-201ENST00000526271 FOXP2O15409 715 aa17.12■□□□□ 0.33
CPSF1-201ENST00000526271 RAD21O60216 631 aa17.12■□□□□ 0.33
CPSF1-201ENST00000526271 KCNA10Q16322 511 aa17.12■□□□□ 0.33
CPSF1-201ENST00000526271 RNF180Q86T96 592 aa17.12■□□□□ 0.33
CPSF1-201ENST00000526271 KBTBD3Q8NAB2 608 aa17.12■□□□□ 0.33
CPSF1-201ENST00000526271 CEP95Q96GE4 821 aa17.12■□□□□ 0.33
CPSF1-201ENST00000526271 SEC62Q99442 399 aaKnown RBP17.12■□□□□ 0.33
CPSF1-201ENST00000526271 TEX13BQ9BXU2 312 aa17.12■□□□□ 0.33
CPSF1-201ENST00000526271 RAVER2Q9HCJ3 691 aaKnown RBP17.12■□□□□ 0.33
CPSF1-201ENST00000526271 SYNGAP1Q96PV0 1343 aa17.12■□□□□ 0.33
CPSF1-201ENST00000526271 TMEM63BQ5T3F8 832 aa17.11■□□□□ 0.33
CPSF1-201ENST00000526271 RASIP1Q5U651 963 aa17.11■□□□□ 0.33
CPSF1-201ENST00000526271 CPXCR1Q8N123 301 aa17.11■□□□□ 0.33
CPSF1-201ENST00000526271 MKL1Q969V6 931 aa17.11■□□□□ 0.33
CPSF1-201ENST00000526271 RNPC3Q96LT9 517 aaKnown RBP17.11■□□□□ 0.33
CPSF1-201ENST00000526271 TOX2Q96NM4 488 aa17.11■□□□□ 0.33
CPSF1-201ENST00000526271 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.11■□□□□ 0.332e-20■□□□□ 9.8
CPSF1-201ENST00000526271 TSEN34Q9BSV6 310 aaKnown RBP17.11■□□□□ 0.33
CPSF1-201ENST00000526271 LRRCC1Q9C099 1032 aa17.11■□□□□ 0.33
CPSF1-201ENST00000526271 UPF3AQ9H1J1 476 aaKnown RBP17.11■□□□□ 0.33
CPSF1-201ENST00000526271 SLC38A10Q9HBR0 1119 aa17.11■□□□□ 0.33
CPSF1-201ENST00000526271 ZNF536O15090 1300 aa17.11■□□□□ 0.33
CPSF1-201ENST00000526271 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.1■□□□□ 0.33
CPSF1-201ENST00000526271 GRXCR1A8MXD5 290 aa17.1■□□□□ 0.33
CPSF1-201ENST00000526271 MINDY4BA8MYZ0 360 aa17.1■□□□□ 0.33
CPSF1-201ENST00000526271 GPAA1O43292 621 aa17.1■□□□□ 0.33
CPSF1-201ENST00000526271 CST5P28325 142 aaPredicted RBP17.1■□□□□ 0.33
CPSF1-201ENST00000526271 LRRC47Q8N1G4 583 aaKnown RBP17.1■□□□□ 0.33
CPSF1-201ENST00000526271 MSL3Q8N5Y2 521 aaKnown RBP17.1■□□□□ 0.33
CPSF1-201ENST00000526271 OTUD7AQ8TE49 926 aaPredicted RBP17.1■□□□□ 0.33
CPSF1-201ENST00000526271 APPBP2Q92624 585 aa17.1■□□□□ 0.33
CPSF1-201ENST00000526271 VWCEQ96DN2 955 aa17.1■□□□□ 0.33
CPSF1-201ENST00000526271 PRDM6Q9NQX0 595 aa17.1■□□□□ 0.33
CPSF1-201ENST00000526271 ECHDC1Q9NTX5 307 aa17.1■□□□□ 0.33
CPSF1-201ENST00000526271 TMEM39AQ9NV64 488 aa17.1■□□□□ 0.33
CPSF1-201ENST00000526271 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.1■□□□□ 0.33
CPSF1-201ENST00000526271 MTMR4Q9NYA4 1195 aa17.1■□□□□ 0.33
CPSF1-201ENST00000526271 CLIP2Q9UDT6 1046 aa17.1■□□□□ 0.33
CPSF1-201ENST00000526271 PLIN4Q96Q06 1357 aa17.1■□□□□ 0.33
CPSF1-201ENST00000526271 DUSP11O75319 330 aaKnown RBP17.09■□□□□ 0.33
CPSF1-201ENST00000526271 RAG1P15918 1043 aa17.09■□□□□ 0.33
CPSF1-201ENST00000526271 PBX2P40425 430 aa17.09■□□□□ 0.33
CPSF1-201ENST00000526271 CNTN2Q02246 1040 aa17.09■□□□□ 0.33
CPSF1-201ENST00000526271 ACVR2BQ13705 512 aa17.09■□□□□ 0.33
CPSF1-201ENST00000526271 CCDC144BQ3MJ40 725 aa17.09■□□□□ 0.33
CPSF1-201ENST00000526271 GIMAP6Q6P9H5 292 aa17.09■□□□□ 0.33
CPSF1-201ENST00000526271 ZNF467Q7Z7K2 595 aaPredicted RBP17.09■□□□□ 0.33
CPSF1-201ENST00000526271 PRPF38AQ8NAV1 312 aaKnown RBP17.09■□□□□ 0.33
CPSF1-201ENST00000526271 STARD7Q9NQZ5 370 aa17.09■□□□□ 0.33
CPSF1-201ENST00000526271 ZHX1Q9UKY1 873 aaPredicted RBP17.09■□□□□ 0.33
CPSF1-201ENST00000526271 NCOR1O75376 2440 aa17.09■□□□□ 0.33
CPSF1-201ENST00000526271 GRIN2DO15399 1336 aa17.08■□□□□ 0.32
CPSF1-201ENST00000526271 SOWAHBA6NEL2 793 aa17.08■□□□□ 0.32
CPSF1-201ENST00000526271 RNF113AO15541 343 aaKnown RBP17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms