RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-216	ENST00000525293	TAB3	Q8N5C8	712 aa	Predicted RBP	3.98	□□□□□ -1.77
CD44-216	ENST00000525293	RBBP8NL	Q8NC74	664 aa	Predicted RBP	3.98	□□□□□ -1.77
CD44-216	ENST00000525293	MAP6	Q96JE9	813 aa		3.98	□□□□□ -1.77
CD44-216	ENST00000525293	CRBN	Q96SW2	442 aa		3.98	□□□□□ -1.77
CD44-216	ENST00000525293	DSCC1	Q9BVC3	393 aa		3.98	□□□□□ -1.77
CD44-216	ENST00000525293	CWC22	Q9HCG8	908 aa	Known RBP	3.98	□□□□□ -1.77
CD44-216	ENST00000525293	FAM86C1	Q9NVL1	165 aa		3.98	□□□□□ -1.77
CD44-216	ENST00000525293	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	3.98	□□□□□ -1.77
CD44-216	ENST00000525293	NOTO	A8MTQ0	251 aa		3.97	□□□□□ -1.77
CD44-216	ENST00000525293	C1QTNF9	P0C862	333 aa		3.97	□□□□□ -1.77
CD44-216	ENST00000525293	COL9A2	Q14055	689 aa	Predicted RBP	3.97	□□□□□ -1.77
CD44-216	ENST00000525293	SNX17	Q15036	470 aa		3.97	□□□□□ -1.77
CD44-216	ENST00000525293	AXDND1	Q5T1B0	1012 aa	Predicted RBP	3.97	□□□□□ -1.77
CD44-216	ENST00000525293	DCAF15	Q66K64	600 aa		3.97	□□□□□ -1.77
CD44-216	ENST00000525293	CEP128	Q6ZU80	1094 aa		3.97	□□□□□ -1.77
CD44-216	ENST00000525293	PPFIBP1	Q86W92	1011 aa		3.97	□□□□□ -1.77
CD44-216	ENST00000525293	LSR	Q86X29	649 aa	Predicted RBP	3.97	□□□□□ -1.77
CD44-216	ENST00000525293	BHLHE22	Q8NFJ8	381 aa	Predicted RBP	3.97	□□□□□ -1.77
CD44-216	ENST00000525293	KCNN1	Q92952	543 aa		3.97	□□□□□ -1.77
CD44-216	ENST00000525293	GPRASP2	Q96D09	838 aa		3.97	□□□□□ -1.77
CD44-216	ENST00000525293	SHISA4	Q96DD7	197 aa		3.97	□□□□□ -1.77
CD44-216	ENST00000525293	INTS4	Q96HW7	963 aa	Known RBP	3.97	□□□□□ -1.77
CD44-216	ENST00000525293	HHIPL1	Q96JK4	782 aa		3.97	□□□□□ -1.77
CD44-216	ENST00000525293	PPP1R16B	Q96T49	567 aa		3.97	□□□□□ -1.77
CD44-216	ENST00000525293	SLC6A17	Q9H1V8	727 aa		3.97	□□□□□ -1.77
CD44-216	ENST00000525293	YBX2	Q9Y2T7	364 aa	Known RBP	3.97	□□□□□ -1.77
CD44-216	ENST00000525293	NFIB	O00712	420 aa		3.96	□□□□□ -1.78
CD44-216	ENST00000525293	SHOX	O15266	292 aa		3.96	□□□□□ -1.78
CD44-216	ENST00000525293	TSPAN15	O95858	294 aa		3.96	□□□□□ -1.78
CD44-216	ENST00000525293	EFEMP2	O95967	443 aa		3.96	□□□□□ -1.78
CD44-216	ENST00000525293	KRT1	P04264	644 aa		3.96	□□□□□ -1.78
CD44-216	ENST00000525293	TMEM253	P0C7T8	217 aa		3.96	□□□□□ -1.78
CD44-216	ENST00000525293	VAV1	P15498	845 aa		3.96	□□□□□ -1.78
CD44-216	ENST00000525293	BMP8B	P34820	402 aa		3.96	□□□□□ -1.78
CD44-216	ENST00000525293	PDE6B	P35913	854 aa		3.96	□□□□□ -1.78
CD44-216	ENST00000525293	KIR2DL1	P43626	348 aa	Predicted RBP	3.96	□□□□□ -1.78
CD44-216	ENST00000525293	KIR2DL2	P43627	348 aa	Predicted RBP	3.96	□□□□□ -1.78
CD44-216	ENST00000525293	SOX9	P48436	509 aa		3.96	□□□□□ -1.78
CD44-216	ENST00000525293	EIF6	P56537	245 aa	Known RBP	3.96	□□□□□ -1.78
CD44-216	ENST00000525293	RTP1	P59025	263 aa		3.96	□□□□□ -1.78
CD44-216	ENST00000525293	ANKRD39	Q53RE8	183 aa		3.96	□□□□□ -1.78
CD44-216	ENST00000525293	NOL9	Q5SY16	702 aa	Known RBP	3.96	□□□□□ -1.78
CD44-216	ENST00000525293	CRTC3	Q6UUV7	619 aa		3.96	□□□□□ -1.78
CD44-216	ENST00000525293	ZNF605	Q86T29	641 aa		3.96	□□□□□ -1.78
CD44-216	ENST00000525293	ANKLE2	Q86XL3	938 aa		3.96	□□□□□ -1.78
CD44-216	ENST00000525293	RASGRP4	Q8TDF6	673 aa		3.96	□□□□□ -1.78
CD44-216	ENST00000525293	BRF1	Q92994	677 aa		3.96	□□□□□ -1.78
CD44-216	ENST00000525293	SPATA32	Q96LK8	384 aa		3.96	□□□□□ -1.78
CD44-216	ENST00000525293	CDADC1	Q9BWV3	514 aa		3.96	□□□□□ -1.78
CD44-216	ENST00000525293	SRRT	Q9BXP5	876 aa	Known RBP	3.96	□□□□□ -1.78
CD44-216	ENST00000525293	AP5S1	Q9NUS5	200 aa		3.96	□□□□□ -1.78
CD44-216	ENST00000525293	PRR13	Q9NZ81	148 aa		3.96	□□□□□ -1.78
CD44-216	ENST00000525293	LTBP3	Q9NS15	1303 aa		3.95	□□□□□ -1.78
CD44-216	ENST00000525293	FADS2P1	A8MWK0	482 aa		3.95	□□□□□ -1.78
CD44-216	ENST00000525293	ETV2	O00321	342 aa	Predicted RBP	3.95	□□□□□ -1.78
CD44-216	ENST00000525293	NRDC	O43847	1150 aa		3.95	□□□□□ -1.78
CD44-216	ENST00000525293	ZNF205	O95201	554 aa		3.95	□□□□□ -1.78
CD44-216	ENST00000525293	GSN	P06396	782 aa		3.95	□□□□□ -1.78
CD44-216	ENST00000525293	CD247	P20963	164 aa		3.95	□□□□□ -1.78
CD44-216	ENST00000525293	NASP	P49321	788 aa	Predicted RBP	3.95	□□□□□ -1.78
CD44-216	ENST00000525293	ZNF445	P59923	1031 aa		3.95	□□□□□ -1.78
CD44-216	ENST00000525293	KIR3DS1	Q14943	382 aa		3.95	□□□□□ -1.78
CD44-216	ENST00000525293	ADGRF1	Q5T601	910 aa		3.95	□□□□□ -1.78
CD44-216	ENST00000525293	LCE4A	Q5TA78	99 aa		3.95	□□□□□ -1.78
CD44-216	ENST00000525293	CWF19L1	Q69YN2	538 aa	Known RBP	3.95	□□□□□ -1.78
CD44-216	ENST00000525293	ATG14	Q6ZNE5	492 aa		3.95	□□□□□ -1.78
CD44-216	ENST00000525293	NLRX1	Q86UT6	975 aa		3.95	□□□□□ -1.78
CD44-216	ENST00000525293	IRF2BP1	Q8IU81	584 aa		3.95	□□□□□ -1.78
CD44-216	ENST00000525293	SMARCC1	Q92922	1105 aa	Predicted RBP	3.95	□□□□□ -1.78
CD44-216	ENST00000525293	FCRL2	Q96LA5	508 aa	Predicted RBP	3.95	□□□□□ -1.78
CD44-216	ENST00000525293	SLC26A8	Q96RN1	970 aa		3.95	□□□□□ -1.78
CD44-216	ENST00000525293	PLCD4	Q9BRC7	762 aa		3.95	□□□□□ -1.78
CD44-216	ENST00000525293	ACBD3	Q9H3P7	528 aa		3.95	□□□□□ -1.78
CD44-216	ENST00000525293	GP6	Q9HCN6	339 aa		3.95	□□□□□ -1.78
CD44-216	ENST00000525293	ERVK13-1	Q9NX77	482 aa		3.95	□□□□□ -1.78
CD44-216	ENST00000525293	TNFRSF10D	Q9UBN6	386 aa		3.95	□□□□□ -1.78
CD44-216	ENST00000525293	ZNF214	Q9UL59	606 aa	Predicted RBP	3.95	□□□□□ -1.78
CD44-216	ENST00000525293	PCDHB10	Q9UN67	800 aa		3.95	□□□□□ -1.78
CD44-216	ENST00000525293	ZNF451	Q9Y4E5	1061 aa		3.95	□□□□□ -1.78
CD44-216	ENST00000525293	MYOCOS	A0A1B0GUC4	107 aa		3.94	□□□□□ -1.78
CD44-216	ENST00000525293		H0Y8X5	98 aa		3.94	□□□□□ -1.78
CD44-216	ENST00000525293	GSTM1	P09488	218 aa		3.94	□□□□□ -1.78
CD44-216	ENST00000525293	ENDOU	P21128	410 aa	Known RBP	3.94	□□□□□ -1.78
CD44-216	ENST00000525293	SDHB	P21912	280 aa		3.94	□□□□□ -1.78
CD44-216	ENST00000525293	CFP	P27918	469 aa		3.94	□□□□□ -1.78
CD44-216	ENST00000525293	GJA8	P48165	433 aa		3.94	□□□□□ -1.78
CD44-216	ENST00000525293	GIPR	P48546	466 aa		3.94	□□□□□ -1.78
CD44-216	ENST00000525293	PPP2R5E	Q16537	467 aa		3.94	□□□□□ -1.78
CD44-216	ENST00000525293	GNPTAB	Q3T906	1256 aa		3.94	□□□□□ -1.78
CD44-216	ENST00000525293	TMEM132E	Q6IEE7	984 aa		3.94	□□□□□ -1.78
CD44-216	ENST00000525293	CPLX3	Q8WVH0	158 aa		3.94	□□□□□ -1.78
CD44-216	ENST00000525293	TOX2	Q96NM4	488 aa		3.94	□□□□□ -1.78
CD44-216	ENST00000525293	KRTAP4-11	Q9BYQ6	195 aa		3.94	□□□□□ -1.78
CD44-216	ENST00000525293	TGIF2	Q9GZN2	237 aa		3.94	□□□□□ -1.78
CD44-216	ENST00000525293	MCOLN1	Q9GZU1	580 aa		3.94	□□□□□ -1.78
CD44-216	ENST00000525293	ZNF552	Q9H707	407 aa	Predicted RBP	3.94	□□□□□ -1.78
CD44-216	ENST00000525293	GPR55	Q9Y2T6	319 aa	Predicted RBP	3.94	□□□□□ -1.78
CD44-216	ENST00000525293	TTBK1	Q5TCY1	1321 aa	Predicted RBP	3.94	□□□□□ -1.78
CD44-216	ENST00000525293		A0A1W2PQH9	124 aa		3.93	□□□□□ -1.78
CD44-216	ENST00000525293	OR14I1	A6ND48	311 aa		3.93	□□□□□ -1.78

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