RNA–Protein interactions for RNA: ENST00000524533.1

HIF3A-208, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 3

Gene HIF3A, Length 507 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-208ENST00000524533 SMCHD1A6NHR9 2005 aa19.38■□□□□ 0.69
HIF3A-208ENST00000524533 ZBED4O75132 1171 aa19.38■□□□□ 0.69
HIF3A-208ENST00000524533 TTLL1O95922 423 aa19.38■□□□□ 0.69
HIF3A-208ENST00000524533 TAL1P17542 331 aaPredicted RBP19.38■□□□□ 0.69
HIF3A-208ENST00000524533 SLC4A3P48751 1232 aa19.38■□□□□ 0.69
HIF3A-208ENST00000524533 PDE4BQ07343 736 aa19.38■□□□□ 0.69
HIF3A-208ENST00000524533 RNF180Q86T96 592 aa19.38■□□□□ 0.69
HIF3A-208ENST00000524533 LRRC47Q8N1G4 583 aaKnown RBP19.38■□□□□ 0.69
HIF3A-208ENST00000524533 OTUD7AQ8TE49 926 aaPredicted RBP19.38■□□□□ 0.69
HIF3A-208ENST00000524533 KIFC2Q96AC6 838 aa19.38■□□□□ 0.69
HIF3A-208ENST00000524533 DDX11Q96FC9 970 aa19.38■□□□□ 0.69
HIF3A-208ENST00000524533 SEC62Q99442 399 aaKnown RBP19.38■□□□□ 0.69
HIF3A-208ENST00000524533 NAPBQ9H115 298 aa19.38■□□□□ 0.69
HIF3A-208ENST00000524533 MTMR4Q9NYA4 1195 aa19.38■□□□□ 0.69
HIF3A-208ENST00000524533 SYNPO2Q9UMS6 1093 aa19.38■□□□□ 0.69
HIF3A-208ENST00000524533 PHF24Q9UPV7 400 aa19.38■□□□□ 0.69
HIF3A-208ENST00000524533 PCDHB15Q9Y5E8 787 aa19.38■□□□□ 0.69
HIF3A-208ENST00000524533 PGK1P00558 417 aa19.37■□□□□ 0.69
HIF3A-208ENST00000524533 ZNF865P0CJ78 1059 aaPredicted RBP19.37■□□□□ 0.69
HIF3A-208ENST00000524533 TSPY3P0CV98 308 aa19.37■□□□□ 0.69
HIF3A-208ENST00000524533 TSPY8P0CW00 308 aa19.37■□□□□ 0.69
HIF3A-208ENST00000524533 C1orf53Q5VUE5 145 aa19.37■□□□□ 0.69
HIF3A-208ENST00000524533 CPXCR1Q8N123 301 aa19.37■□□□□ 0.69
HIF3A-208ENST00000524533 MSL3Q8N5Y2 521 aaKnown RBP19.37■□□□□ 0.69
HIF3A-208ENST00000524533 GMCL1P1Q8NEA9 526 aa19.37■□□□□ 0.69
HIF3A-208ENST00000524533 MKL1Q969V6 931 aa19.37■□□□□ 0.69
HIF3A-208ENST00000524533 PDLIM7Q9NR12 457 aa19.37■□□□□ 0.69
HIF3A-208ENST00000524533 MTMR10Q9NXD2 777 aa19.37■□□□□ 0.69
HIF3A-208ENST00000524533 RIPK3Q9Y572 518 aa19.37■□□□□ 0.69
HIF3A-208ENST00000524533 SYNGAP1Q96PV0 1343 aa19.36■□□□□ 0.69
HIF3A-208ENST00000524533 ATP2A1O14983 1001 aa19.36■□□□□ 0.69
HIF3A-208ENST00000524533 SLC3A2P08195 630 aaKnown RBP19.36■□□□□ 0.69
HIF3A-208ENST00000524533 MX1P20591 662 aa19.36■□□□□ 0.69
HIF3A-208ENST00000524533 NEDD1Q8NHV4 660 aa19.36■□□□□ 0.69
HIF3A-208ENST00000524533 LENG1Q96BZ8 264 aaPredicted RBP19.36■□□□□ 0.69
HIF3A-208ENST00000524533 SLC38A10Q9HBR0 1119 aa19.36■□□□□ 0.69
HIF3A-208ENST00000524533 FEM1BQ9UK73 627 aa19.36■□□□□ 0.69
HIF3A-208ENST00000524533 DNAJC25-GNG10A0A024R161 153 aa19.35■□□□□ 0.69
HIF3A-208ENST00000524533 PPARAQ07869 468 aa19.35■□□□□ 0.69
HIF3A-208ENST00000524533 ZMYM1Q5SVZ6 1142 aa19.35■□□□□ 0.69
HIF3A-208ENST00000524533 RAVER2Q9HCJ3 691 aaKnown RBP19.35■□□□□ 0.69
HIF3A-208ENST00000524533 ISY1Q9ULR0 285 aaKnown RBP19.35■□□□□ 0.69
HIF3A-208ENST00000524533 STXBP5LQ9Y2K9 1186 aa19.35■□□□□ 0.69
HIF3A-208ENST00000524533 SYNRGQ9UMZ2 1314 aa19.34■□□□□ 0.69
HIF3A-208ENST00000524533 A0A1W2PQ45 241 aaPredicted RBP19.34■□□□□ 0.69
HIF3A-208ENST00000524533 A0A1W2PQY0 241 aa19.34■□□□□ 0.69
HIF3A-208ENST00000524533 BMP3P12645 472 aa19.34■□□□□ 0.69
HIF3A-208ENST00000524533 TFAP4Q01664 338 aa19.34■□□□□ 0.69
HIF3A-208ENST00000524533 TLE2Q04725 743 aa19.34■□□□□ 0.69
HIF3A-208ENST00000524533 SLFN13Q68D06 897 aa19.34■□□□□ 0.69
HIF3A-208ENST00000524533 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.34■□□□□ 0.69
HIF3A-208ENST00000524533 BADQ92934 168 aa19.34■□□□□ 0.69
HIF3A-208ENST00000524533 FBXO40Q9UH90 709 aa19.34■□□□□ 0.69
HIF3A-208ENST00000524533 ZHX1Q9UKY1 873 aaPredicted RBP19.34■□□□□ 0.69
HIF3A-208ENST00000524533 LAMA2P24043 3122 aaKnown RBP19.33■□□□□ 0.69
HIF3A-208ENST00000524533 TRIM43BA6NCK2 446 aa19.33■□□□□ 0.68
HIF3A-208ENST00000524533 ADAMTS4O75173 837 aa19.33■□□□□ 0.68
HIF3A-208ENST00000524533 OAZ1P54368 228 aa19.33■□□□□ 0.68
HIF3A-208ENST00000524533 MAMDC4Q6UXC1 1216 aa19.33■□□□□ 0.68
HIF3A-208ENST00000524533 SH3RF1Q7Z6J0 888 aa19.33■□□□□ 0.68
HIF3A-208ENST00000524533 ZNF467Q7Z7K2 595 aaPredicted RBP19.33■□□□□ 0.68
HIF3A-208ENST00000524533 ANKRD35Q8N283 1001 aa19.33■□□□□ 0.68
HIF3A-208ENST00000524533 CHST13Q8NET6 341 aa19.33■□□□□ 0.68
HIF3A-208ENST00000524533 TRIM43Q96BQ3 446 aaPredicted RBP19.33■□□□□ 0.68
HIF3A-208ENST00000524533 ZBTB47Q9UFB7 747 aaPredicted RBP19.33■□□□□ 0.68
HIF3A-208ENST00000524533 FAM184BQ9ULE4 1060 aa19.33■□□□□ 0.68
HIF3A-208ENST00000524533 SALL3Q9BXA9 1300 aa19.32■□□□□ 0.68
HIF3A-208ENST00000524533 MCM3APO60318 1980 aa19.32■□□□□ 0.68
HIF3A-208ENST00000524533 SNAI1O95863 264 aaPredicted RBP19.32■□□□□ 0.68
HIF3A-208ENST00000524533 CLTBP09497 229 aa19.32■□□□□ 0.68
HIF3A-208ENST00000524533 STAT2P52630 851 aa19.32■□□□□ 0.68
HIF3A-208ENST00000524533 RRP1P56182 461 aaKnown RBP19.32■□□□□ 0.68
HIF3A-208ENST00000524533 SHHQ15465 462 aa19.32■□□□□ 0.68
HIF3A-208ENST00000524533 TSEN34Q9BSV6 310 aaKnown RBP19.32■□□□□ 0.68
HIF3A-208ENST00000524533 TMEM232C9JQI7 657 aa19.31■□□□□ 0.68
HIF3A-208ENST00000524533 PQBP1O60828 265 aaKnown RBP19.31■□□□□ 0.68
HIF3A-208ENST00000524533 FDX1P10109 184 aa19.31■□□□□ 0.68
HIF3A-208ENST00000524533 ACLYP53396 1101 aa19.31■□□□□ 0.68
HIF3A-208ENST00000524533 IKQ13123 557 aaPredicted RBP19.31■□□□□ 0.68
HIF3A-208ENST00000524533 PPP4R3BQ5MIZ7 849 aa19.31■□□□□ 0.68
HIF3A-208ENST00000524533 C9orf50Q5SZB4 431 aa19.31■□□□□ 0.68
HIF3A-208ENST00000524533 FAM109BQ6ICB4 259 aaPredicted RBP19.31■□□□□ 0.68
HIF3A-208ENST00000524533 CCDC129Q6ZRS4 1044 aa19.31■□□□□ 0.68
HIF3A-208ENST00000524533 GMCL1Q96IK5 515 aa19.31■□□□□ 0.68
HIF3A-208ENST00000524533 HOMER2Q9NSB8 354 aa19.31■□□□□ 0.68
HIF3A-208ENST00000524533 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.31■□□□□ 0.68
HIF3A-208ENST00000524533 TACC3Q9Y6A5 838 aa19.31■□□□□ 0.68
HIF3A-208ENST00000524533 TSPY2A6NKD2 308 aa19.3■□□□□ 0.68
HIF3A-208ENST00000524533 POTEB2H3BUK9 544 aa19.3■□□□□ 0.68
HIF3A-208ENST00000524533 FOXP2O15409 715 aa19.3■□□□□ 0.68
HIF3A-208ENST00000524533 SLC1A4P43007 532 aa19.3■□□□□ 0.68
HIF3A-208ENST00000524533 ACVR2BQ13705 512 aa19.3■□□□□ 0.68
HIF3A-208ENST00000524533 FAM160B2Q86V87 743 aa19.3■□□□□ 0.68
HIF3A-208ENST00000524533 NUP133Q8WUM0 1156 aa19.3■□□□□ 0.68
HIF3A-208ENST00000524533 FGD4Q96M96 766 aa19.3■□□□□ 0.68
HIF3A-208ENST00000524533 ACAD9Q9H845 621 aa19.3■□□□□ 0.68
HIF3A-208ENST00000524533 STARD7Q9NQZ5 370 aa19.3■□□□□ 0.68
HIF3A-208ENST00000524533 STX8Q9UNK0 236 aa19.3■□□□□ 0.68
HIF3A-208ENST00000524533 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.3■□□□□ 0.68
HIF3A-208ENST00000524533 LRRC37A2A6NM11 1700 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms