RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 GRM4Q14833 912 aa17.86■□□□□ 0.45
LSM1-203ENST00000520755 CATIPQ7Z7H3 387 aa17.86■□□□□ 0.45
LSM1-203ENST00000520755 CCDC144CPQ8IYA2 1237 aa17.86■□□□□ 0.45
LSM1-203ENST00000520755 ANKRD13CQ8N6S4 541 aa17.86■□□□□ 0.45
LSM1-203ENST00000520755 TMX3Q96JJ7 454 aa17.86■□□□□ 0.45
LSM1-203ENST00000520755 SLF1Q9BQI6 1058 aa17.86■□□□□ 0.45
LSM1-203ENST00000520755 PAGR1Q9BTK6 254 aa17.86■□□□□ 0.45
LSM1-203ENST00000520755 NCOA5Q9HCD5 579 aaKnown RBP17.86■□□□□ 0.45
LSM1-203ENST00000520755 GPCPD1Q9NPB8 672 aa17.86■□□□□ 0.45
LSM1-203ENST00000520755 FAM217BQ9NTX9 383 aaPredicted RBP17.86■□□□□ 0.45
LSM1-203ENST00000520755 ZSWIM8A7E2V4 1837 aa17.86■□□□□ 0.45
LSM1-203ENST00000520755 MGAMO43451 1857 aa17.86■□□□□ 0.45
LSM1-203ENST00000520755 SMCHD1A6NHR9 2005 aa17.85■□□□□ 0.45
LSM1-203ENST00000520755 GOLGA8AA7E2F4 631 aa17.85■□□□□ 0.45
LSM1-203ENST00000520755 K7ELQ4 463 aaPredicted RBP17.85■□□□□ 0.45
LSM1-203ENST00000520755 GPR25O00155 361 aa17.85■□□□□ 0.45
LSM1-203ENST00000520755 PEX10O60683 326 aa17.85■□□□□ 0.45
LSM1-203ENST00000520755 PFKFB2O60825 505 aa17.85■□□□□ 0.45
LSM1-203ENST00000520755 GOLGA8HP0CJ92 632 aa17.85■□□□□ 0.45
LSM1-203ENST00000520755 CDC27P30260 824 aa17.85■□□□□ 0.45
LSM1-203ENST00000520755 DSG3P32926 999 aa17.85■□□□□ 0.45
LSM1-203ENST00000520755 GCLCP48506 637 aaPredicted RBP17.85■□□□□ 0.45
LSM1-203ENST00000520755 MCM2P49736 904 aa17.85■□□□□ 0.45
LSM1-203ENST00000520755 SCRN1Q12765 414 aa17.85■□□□□ 0.45
LSM1-203ENST00000520755 C17orf99Q6UX52 265 aa17.85■□□□□ 0.45
LSM1-203ENST00000520755 RBBP6Q7Z6E9 1792 aaKnown RBP17.85■□□□□ 0.45
LSM1-203ENST00000520755 NECAB1Q8N987 351 aa17.85■□□□□ 0.45
LSM1-203ENST00000520755 NUP133Q8WUM0 1156 aa17.85■□□□□ 0.45
LSM1-203ENST00000520755 GTF3C6Q969F1 213 aa17.85■□□□□ 0.45
LSM1-203ENST00000520755 ATG4CQ96DT6 458 aa17.85■□□□□ 0.45
LSM1-203ENST00000520755 HOXC10Q9NYD6 342 aa17.85■□□□□ 0.45
LSM1-203ENST00000520755 FEM1BQ9UK73 627 aa17.85■□□□□ 0.45
LSM1-203ENST00000520755 PPP1R9AQ9ULJ8 1098 aa17.85■□□□□ 0.45
LSM1-203ENST00000520755 MYPNQ86TC9 1320 aa17.84■□□□□ 0.45
LSM1-203ENST00000520755 ECM2O94769 699 aaPredicted RBP17.84■□□□□ 0.45
LSM1-203ENST00000520755 BCRP11274 1271 aa17.84■□□□□ 0.45
LSM1-203ENST00000520755 METAP2P50579 478 aaKnown RBP eCLIP17.84■□□□□ 0.45
LSM1-203ENST00000520755 STAT2P52630 851 aa17.84■□□□□ 0.45
LSM1-203ENST00000520755 LBX1P52954 281 aa17.84■□□□□ 0.45
LSM1-203ENST00000520755 CCT2P78371 535 aaKnown RBP17.84■□□□□ 0.45
LSM1-203ENST00000520755 ZNF543Q08ER8 600 aa17.84■□□□□ 0.45
LSM1-203ENST00000520755 SLC35G1Q2M3R5 365 aa17.84■□□□□ 0.45
LSM1-203ENST00000520755 TTBK2Q6IQ55 1244 aa17.84■□□□□ 0.45
LSM1-203ENST00000520755 STAG2Q8N3U4 1231 aa17.84■□□□□ 0.45
LSM1-203ENST00000520755 GTF3C2Q8WUA4 911 aaPredicted RBP17.84■□□□□ 0.45
LSM1-203ENST00000520755 KIFC2Q96AC6 838 aa17.84■□□□□ 0.45
LSM1-203ENST00000520755 MAP3K14Q99558 947 aa17.84■□□□□ 0.45
LSM1-203ENST00000520755 MAD2L2Q9UI95 211 aa17.84■□□□□ 0.45
LSM1-203ENST00000520755 NAP1L2Q9ULW6 460 aaPredicted RBP17.84■□□□□ 0.45
LSM1-203ENST00000520755 PALM3A6NDB9 673 aaPredicted RBP17.83■□□□□ 0.44
LSM1-203ENST00000520755 PARP1P09874 1014 aaKnown RBP17.83■□□□□ 0.44
LSM1-203ENST00000520755 SLC16A2P36021 539 aa17.83■□□□□ 0.44
LSM1-203ENST00000520755 SP3Q02447 781 aa17.83■□□□□ 0.44
LSM1-203ENST00000520755 RTN1Q16799 776 aa17.83■□□□□ 0.44
LSM1-203ENST00000520755 POTEEQ6S8J3 1075 aa17.83■□□□□ 0.44
LSM1-203ENST00000520755 FAM160B2Q86V87 743 aa17.83■□□□□ 0.44
LSM1-203ENST00000520755 HSCBQ8IWL3 235 aa17.83■□□□□ 0.44
LSM1-203ENST00000520755 PRPF38AQ8NAV1 312 aaKnown RBP17.83■□□□□ 0.44
LSM1-203ENST00000520755 FANCBQ8NB91 859 aa17.83■□□□□ 0.44
LSM1-203ENST00000520755 CHURC1Q8WUH1 139 aa17.83■□□□□ 0.44
LSM1-203ENST00000520755 ZNF296Q8WUU4 475 aaPredicted RBP17.83■□□□□ 0.44
LSM1-203ENST00000520755 ZSCAN31Q96LW9 406 aaPredicted RBP17.83■□□□□ 0.44
LSM1-203ENST00000520755 TXNRD2Q9NNW7 524 aa17.83■□□□□ 0.44
LSM1-203ENST00000520755 SH2B1Q9NRF2 756 aaPredicted RBP17.83■□□□□ 0.44
LSM1-203ENST00000520755 RBPJLQ9UBG7 517 aa17.83■□□□□ 0.44
LSM1-203ENST00000520755 DTNBO60941 627 aa17.82■□□□□ 0.44
LSM1-203ENST00000520755 FKTNO75072 461 aa17.82■□□□□ 0.44
LSM1-203ENST00000520755 PLEKHA8P1O95397 391 aa17.82■□□□□ 0.44
LSM1-203ENST00000520755 CALM1P0DP23 149 aa17.82■□□□□ 0.44
LSM1-203ENST00000520755 CALM2P0DP24 149 aa17.82■□□□□ 0.44
LSM1-203ENST00000520755 CALM3P0DP25 149 aa17.82■□□□□ 0.44
LSM1-203ENST00000520755 FAM110CQ1W6H9 321 aa17.82■□□□□ 0.44
LSM1-203ENST00000520755 ASPRV1Q53RT3 343 aa17.82■□□□□ 0.44
LSM1-203ENST00000520755 GPATCH4Q5T3I0 446 aaKnown RBP17.82■□□□□ 0.44
LSM1-203ENST00000520755 LBX2Q6XYB7 198 aa17.82■□□□□ 0.44
LSM1-203ENST00000520755 SYNE3Q6ZMZ3 975 aa17.82■□□□□ 0.44
LSM1-203ENST00000520755 CCDC83Q8IWF9 413 aa17.82■□□□□ 0.44
LSM1-203ENST00000520755 SLKQ9H2G2 1235 aaPredicted RBP17.82■□□□□ 0.44
LSM1-203ENST00000520755 CPVLQ9H3G5 476 aa17.82■□□□□ 0.44
LSM1-203ENST00000520755 BTBD7Q9P203 1132 aa17.82■□□□□ 0.44
LSM1-203ENST00000520755 CNTNAP5Q8WYK1 1306 aa17.81■□□□□ 0.44
LSM1-203ENST00000520755 VWA5AO00534 786 aa17.81■□□□□ 0.44
LSM1-203ENST00000520755 CNMDO75829 334 aa17.81■□□□□ 0.44
LSM1-203ENST00000520755 CTDNEP1O95476 244 aa17.81■□□□□ 0.44
LSM1-203ENST00000520755 ADD1P35611 737 aaKnown RBP17.81■□□□□ 0.44
LSM1-203ENST00000520755 ERVK-9P63128 1117 aa17.81■□□□□ 0.44
LSM1-203ENST00000520755 ERVK-24P63145 666 aa17.81■□□□□ 0.44
LSM1-203ENST00000520755 FUT2Q10981 343 aa17.81■□□□□ 0.44
LSM1-203ENST00000520755 CUL4AQ13619 759 aa17.81■□□□□ 0.44
LSM1-203ENST00000520755 PLS1Q14651 629 aa17.81■□□□□ 0.44
LSM1-203ENST00000520755 NTRK3Q16288 839 aa17.81■□□□□ 0.44
LSM1-203ENST00000520755 NOM1Q5C9Z4 860 aaKnown RBP17.81■□□□□ 0.44
LSM1-203ENST00000520755 TMTC3Q6ZXV5 915 aa17.81■□□□□ 0.44
LSM1-203ENST00000520755 NBPF11Q86T75 865 aa17.81■□□□□ 0.44
LSM1-203ENST00000520755 GPRC5AQ8NFJ5 357 aa17.81■□□□□ 0.44
LSM1-203ENST00000520755 MORF4L1Q9UBU8 362 aa17.81■□□□□ 0.44
LSM1-203ENST00000520755 PRR12Q9ULL5 1215 aa17.81■□□□□ 0.44
LSM1-203ENST00000520755 RABGAP1Q9Y3P9 1069 aa17.81■□□□□ 0.44
LSM1-203ENST00000520755 CTDP1Q9Y5B0 961 aaPredicted RBP17.81■□□□□ 0.44
LSM1-203ENST00000520755 PLA2G6O60733 806 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms