RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 SPRED2Q7Z698 418 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 C12orf40Q86WS4 652 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 VPS37DQ86XT2 251 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 MCATQ8IVS2 390 aaKnown RBP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 CCAR1Q8IX12 1150 aaKnown RBP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 SPACA3Q8IXA5 215 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 MRPL41Q8IXM3 137 aaKnown RBP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 SMC5Q8IY18 1101 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 EXOC8Q8IYI6 725 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 REXO1Q8N1G1 1221 aaKnown RBP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 TTLL6Q8N841 843 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 LINC01356Q8N9X3 169 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 FAM181AQ8N9Y4 354 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 MARCH10Q8NA82 808 aaPredicted RBP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 TMEM87AQ8NBN3 555 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 DAGLBQ8NCG7 672 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 GPBAR1Q8TDU6 330 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 SYTL5Q8TDW5 730 aaPredicted RBP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 MICAL1Q8TDZ2 1067 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 PANK1Q8TE04 598 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 MORC4Q8TE76 937 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 LIN37Q96GY3 246 aaPredicted RBP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 PEX11GQ96HA9 241 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 TMEM87BQ96K49 555 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 FCRL2Q96LA5 508 aaPredicted RBP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 SAMD11Q96NU1 681 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 FAM129BQ96TA1 746 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 TCF12Q99081 682 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 GMLQ99445 158 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 DNAJC2Q99543 621 aaKnown RBP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 CDADC1Q9BWV3 514 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 TANGO6Q9C0B7 1094 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 LNPKQ9C0E8 428 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 TGIF2Q9GZN2 237 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 GBP3Q9H0R5 595 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 CHRDQ9H2X0 955 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 TMPRSS5Q9H3S3 457 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 DEF6Q9H4E7 631 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZNF552Q9H707 407 aaPredicted RBP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 C12orf49Q9H741 205 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 BARX1Q9HBU1 254 aaPredicted RBP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 ATP13A1Q9HD20 1204 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 ABCB6Q9NP58 842 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 CD320Q9NPF0 282 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 GEMIN8Q9NWZ8 242 aaKnown RBP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 SMPD4Q9NXE4 827 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 SEPT3Q9UH03 358 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 FOXD3Q9UJU5 478 aaPredicted RBP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 FBXL21Q9UKT6 434 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZMIZ1Q9ULJ6 1067 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 PPP1R9AQ9ULJ8 1098 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 WDR3Q9UNX4 943 aaKnown RBP eCLIP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 JAG2Q9Y219 1238 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 YBX2Q9Y2T7 364 aaKnown RBP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 NOP58Q9Y2X3 529 aaKnown RBP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 SUGT1Q9Y2Z0 365 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 PCDHB12Q9Y5F1 795 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 WDR33Q9C0J8 1336 aaKnown RBP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZNF503-AS2A6NEH8 195 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 A6NHS1 94 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 C9orf118A6NHY6 69 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 METTL12A8MUP2 240 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 NOP56O00567 594 aaKnown RBP0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 PPP1R12AO14974 1030 aaPredicted RBP0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZBTB39O15060 712 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 CYP27B1O15528 508 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 NRDCO43847 1150 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZNF862O60290 1169 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 FZD6O60353 706 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 NPHS1O60500 1241 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 SORBS3O60504 671 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 PPM1BO75688 479 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 TRPA1O75762 1119 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 CYP1A1P04798 512 aaPredicted RBP0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 POLR3DP05423 398 aaPredicted RBP0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 LDHBP07195 334 aaKnown RBP0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 ITGA4P13612 1032 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 NAT1P18440 290 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 KRTAP5-9P26371 169 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 GRK4P32298 578 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 GBP2P32456 591 aaPredicted RBP0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 MCM7P33993 719 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 GTF2F1P35269 517 aaKnown RBP eCLIP0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZNF76P36508 570 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 MAPKAPK2P49137 400 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 SARSP49591 514 aaKnown RBP0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 RGS19P49795 217 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 SEPHS1P49903 392 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 NKX3-2P78367 333 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 DAB2P98082 770 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 TAGLNQ01995 201 aaKnown RBP0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 MVKQ03426 396 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 ARID5AQ03989 594 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 NMIQ13287 307 aaPredicted RBP0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZNF211Q13398 564 aaPredicted RBP0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 MPP2Q14168 576 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 GRM2Q14416 872 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 TAF1CQ15572 869 aaPredicted RBP0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 ENOX2Q16206 610 aaKnown RBP0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 DDB1Q16531 1140 aa0.78□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms