RNA–Protein interactions for RNA: ENST00000515609.1

TPM3-222, Transcript of tropomyosin 3, human

TSL 3

Gene TPM3, Length 587 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM3-222	ENST00000515609	LAD1	O00515	517 aa		10.86	□□□□□ -0.67
TPM3-222	ENST00000515609	WDR46	O15213	610 aa	Known RBP	10.86	□□□□□ -0.67
TPM3-222	ENST00000515609	CTAGE5	O15320	804 aa		10.86	□□□□□ -0.67
TPM3-222	ENST00000515609	NDUFB10	O96000	172 aa		10.86	□□□□□ -0.67
TPM3-222	ENST00000515609	EPHX2	P34913	555 aa		10.86	□□□□□ -0.67
TPM3-222	ENST00000515609	IREB2	P48200	963 aa	Known RBP	10.86	□□□□□ -0.67
TPM3-222	ENST00000515609	OTUD7B	Q6GQQ9	843 aa		10.86	□□□□□ -0.67
TPM3-222	ENST00000515609	HOMER1	Q86YM7	354 aa		10.86	□□□□□ -0.67
TPM3-222	ENST00000515609	SCYL3	Q8IZE3	742 aa		10.86	□□□□□ -0.67
TPM3-222	ENST00000515609	ADGRF4	Q8IZF3	695 aa		10.86	□□□□□ -0.67
TPM3-222	ENST00000515609	LINC00301	Q8NCQ3	95 aa		10.86	□□□□□ -0.67
TPM3-222	ENST00000515609	CUL5	Q93034	780 aa		10.86	□□□□□ -0.67
TPM3-222	ENST00000515609	AIFM3	Q96NN9	605 aa		10.86	□□□□□ -0.67
TPM3-222	ENST00000515609	USP28	Q96RU2	1077 aa		10.86	□□□□□ -0.67
TPM3-222	ENST00000515609	PYM1	Q9BRP8	204 aa	Known RBP	10.86	□□□□□ -0.67
TPM3-222	ENST00000515609	WDR18	Q9BV38	432 aa		10.86	□□□□□ -0.67
TPM3-222	ENST00000515609	AMN	Q9BXJ7	453 aa		10.86	□□□□□ -0.67
TPM3-222	ENST00000515609	VAT1L	Q9HCJ6	419 aa		10.86	□□□□□ -0.67
TPM3-222	ENST00000515609	HOOK1	Q9UJC3	728 aa	Known RBP	10.86	□□□□□ -0.67
TPM3-222	ENST00000515609	ZNF112	Q9UJU3	913 aa		10.86	□□□□□ -0.67
TPM3-222	ENST00000515609	KCNJ14	Q9UNX9	436 aa		10.86	□□□□□ -0.67
TPM3-222	ENST00000515609	FRMPD2	Q68DX3	1309 aa	Predicted RBP	10.85	□□□□□ -0.67
TPM3-222	ENST00000515609	SMCO2	A6NFE2	343 aa		10.85	□□□□□ -0.67
TPM3-222	ENST00000515609	PHF20L1	A8MW92	1017 aa		10.85	□□□□□ -0.67
TPM3-222	ENST00000515609	USP17L10	C9JJH3	530 aa		10.85	□□□□□ -0.67
TPM3-222	ENST00000515609	STXBP3	O00186	592 aa		10.85	□□□□□ -0.67
TPM3-222	ENST00000515609	CYTH3	O43739	400 aa		10.85	□□□□□ -0.67
TPM3-222	ENST00000515609	ADCY7	P51828	1080 aa		10.85	□□□□□ -0.67
TPM3-222	ENST00000515609	CCDC183	Q5T5S1	534 aa		10.85	□□□□□ -0.67
TPM3-222	ENST00000515609	SYDE2	Q5VT97	1194 aa		10.85	□□□□□ -0.67
TPM3-222	ENST00000515609	WWC2	Q6AWC2	1192 aa		10.85	□□□□□ -0.67
TPM3-222	ENST00000515609	REXO1	Q8N1G1	1221 aa	Known RBP	10.85	□□□□□ -0.67
TPM3-222	ENST00000515609	TRPM4	Q8TD43	1214 aa		10.85	□□□□□ -0.67
TPM3-222	ENST00000515609	FERMT2	Q96AC1	680 aa		10.85	□□□□□ -0.67
TPM3-222	ENST00000515609	MTMR8	Q96EF0	704 aa		10.85	□□□□□ -0.67
TPM3-222	ENST00000515609	PIGS	Q96S52	555 aa		10.85	□□□□□ -0.67
TPM3-222	ENST00000515609	WRNIP1	Q96S55	665 aa		10.85	□□□□□ -0.67
TPM3-222	ENST00000515609	JMJD4	Q9H9V9	463 aa		10.85	□□□□□ -0.67
TPM3-222	ENST00000515609	CTDP1	Q9Y5B0	961 aa	Predicted RBP	10.85	□□□□□ -0.67
TPM3-222	ENST00000515609	CSAD	Q9Y600	493 aa		10.85	□□□□□ -0.67
TPM3-222	ENST00000515609	SIPA1L1	O43166	1804 aa		10.85	□□□□□ -0.67
TPM3-222	ENST00000515609	MYH4	Q9Y623	1939 aa		10.85	□□□□□ -0.67
TPM3-222	ENST00000515609	SHTN1	A0MZ66	631 aa		10.84	□□□□□ -0.67
TPM3-222	ENST00000515609	TMEM232	C9JQI7	657 aa		10.84	□□□□□ -0.67
TPM3-222	ENST00000515609	KIN	O60870	393 aa	Known RBP	10.84	□□□□□ -0.67
TPM3-222	ENST00000515609	CUTA	O60888	179 aa		10.84	□□□□□ -0.67
TPM3-222	ENST00000515609	EGFR	P00533	1210 aa		10.84	□□□□□ -0.67
TPM3-222	ENST00000515609	FOS	P01100	380 aa	Predicted RBP	10.84	□□□□□ -0.67
TPM3-222	ENST00000515609	CEBPZ	Q03701	1054 aa	Known RBP	10.84	□□□□□ -0.67
TPM3-222	ENST00000515609	NONO	Q15233	471 aa	Known RBP eCLIP	10.84	□□□□□ -0.67
TPM3-222	ENST00000515609	NOL9	Q5SY16	702 aa	Known RBP	10.84	□□□□□ -0.67
TPM3-222	ENST00000515609	NBPF12	Q5TAG4	269 aa	Predicted RBP	10.84	□□□□□ -0.67
TPM3-222	ENST00000515609	ARL6IP4	Q66PJ3	421 aa	Known RBP	10.84	□□□□□ -0.67
TPM3-222	ENST00000515609	CAVIN1	Q6NZI2	390 aa	Known RBP	10.84	□□□□□ -0.67
TPM3-222	ENST00000515609	FAM173B	Q6P4H8	233 aa		10.84	□□□□□ -0.67
TPM3-222	ENST00000515609	KCTD1	Q719H9	257 aa		10.84	□□□□□ -0.67
TPM3-222	ENST00000515609	KRT26	Q7Z3Y9	468 aa		10.84	□□□□□ -0.67
TPM3-222	ENST00000515609	FBXO11	Q86XK2	927 aa		10.84	□□□□□ -0.67
TPM3-222	ENST00000515609	SIAH1	Q8IUQ4	282 aa		10.84	□□□□□ -0.67
TPM3-222	ENST00000515609	SAMD3	Q8N6K7	520 aa		10.84	□□□□□ -0.67
TPM3-222	ENST00000515609	KRI1	Q8N9T8	703 aa	Known RBP	10.84	□□□□□ -0.67
TPM3-222	ENST00000515609	ZNF579	Q8NAF0	562 aa	Known RBP	10.84	□□□□□ -0.67
TPM3-222	ENST00000515609	PRPF38A	Q8NAV1	312 aa	Known RBP	10.84	□□□□□ -0.67
TPM3-222	ENST00000515609	PIBF1	Q8WXW3	757 aa		10.84	□□□□□ -0.67
TPM3-222	ENST00000515609	UBA5	Q9GZZ9	404 aa		10.84	□□□□□ -0.67
TPM3-222	ENST00000515609	MAF1	Q9H063	256 aa		10.84	□□□□□ -0.67
TPM3-222	ENST00000515609	PSTPIP2	Q9H939	334 aa		10.84	□□□□□ -0.67
TPM3-222	ENST00000515609	EHMT1	Q9H9B1	1298 aa		10.84	□□□□□ -0.67
TPM3-222	ENST00000515609	GDPD2	Q9HCC8	539 aa		10.84	□□□□□ -0.67
TPM3-222	ENST00000515609	FAM13B	Q9NYF5	915 aa		10.84	□□□□□ -0.67
TPM3-222	ENST00000515609	hCG_1642624	A0A1W2PR95	340 aa		10.83	□□□□□ -0.68
TPM3-222	ENST00000515609	KIF28P	B7ZC32	967 aa		10.83	□□□□□ -0.68
TPM3-222	ENST00000515609	DTNB	O60941	627 aa		10.83	□□□□□ -0.68
TPM3-222	ENST00000515609	CMA1	P23946	247 aa		10.83	□□□□□ -0.68
TPM3-222	ENST00000515609	FAM160A1	Q05DH4	1040 aa		10.83	□□□□□ -0.68
TPM3-222	ENST00000515609	AP3B2	Q13367	1082 aa		10.83	□□□□□ -0.68
TPM3-222	ENST00000515609	ZRSR1	Q15695	479 aa	Known RBP	10.83	□□□□□ -0.68
TPM3-222	ENST00000515609	CDC37	Q16543	378 aa	Predicted RBP	10.83	□□□□□ -0.68
TPM3-222	ENST00000515609	L1TD1	Q5T7N2	865 aa	Known RBP	10.83	□□□□□ -0.68
TPM3-222	ENST00000515609	ZNF280C	Q8ND82	737 aa		10.83	□□□□□ -0.68
TPM3-222	ENST00000515609	MRPS27	Q92552	414 aa	Known RBP	10.83	□□□□□ -0.68
TPM3-222	ENST00000515609	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	10.83	□□□□□ -0.68
TPM3-222	ENST00000515609	KLRG1	Q96E93	195 aa		10.83	□□□□□ -0.68
TPM3-222	ENST00000515609	RIC8A	Q9NPQ8	531 aa		10.83	□□□□□ -0.68
TPM3-222	ENST00000515609	GJB4	Q9NTQ9	266 aa		10.83	□□□□□ -0.68
TPM3-222	ENST00000515609	TMOD4	Q9NZQ9	345 aa		10.83	□□□□□ -0.68
TPM3-222	ENST00000515609	PCDHA1	Q9Y5I3	950 aa		10.83	□□□□□ -0.68
TPM3-222	ENST00000515609	SCN4A	P35499	1836 aa		10.82	□□□□□ -0.68
TPM3-222	ENST00000515609	CAVIN2	O95810	425 aa		10.82	□□□□□ -0.68
TPM3-222	ENST00000515609	GCFC2	P16383	781 aa	Known RBP	10.82	□□□□□ -0.68
TPM3-222	ENST00000515609	TXLNA	P40222	546 aa		10.82	□□□□□ -0.68
TPM3-222	ENST00000515609	HIRA	P54198	1017 aa	Predicted RBP	10.82	□□□□□ -0.68
TPM3-222	ENST00000515609	BACE1	P56817	501 aa		10.82	□□□□□ -0.68
TPM3-222	ENST00000515609	ZNF445	P59923	1031 aa		10.82	□□□□□ -0.68
TPM3-222	ENST00000515609	MAP3K9	P80192	1104 aa		10.82	□□□□□ -0.68
TPM3-222	ENST00000515609	NR5A1	Q13285	461 aa		10.82	□□□□□ -0.68
TPM3-222	ENST00000515609	TTC38	Q5R3I4	469 aa		10.82	□□□□□ -0.68
TPM3-222	ENST00000515609	KANK3	Q6NY19	840 aa		10.82	□□□□□ -0.68
TPM3-222	ENST00000515609	PIK3AP1	Q6ZUJ8	805 aa		10.82	□□□□□ -0.68
TPM3-222	ENST00000515609	ARMC9	Q7Z3E5	817 aa		10.82	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms