RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 U3KPZ7 1027 aaPredicted RBP11.46□□□□□ -0.57
RNF4-221ENST00000513643 TMEM232C9JQI7 657 aa11.45□□□□□ -0.58
RNF4-221ENST00000513643 KDM4AO75164 1064 aa11.45□□□□□ -0.58
RNF4-221ENST00000513643 PDHBP11177 359 aa11.45□□□□□ -0.58
RNF4-221ENST00000513643 COPB2P35606 906 aa11.45□□□□□ -0.58
RNF4-221ENST00000513643 SLC1A4P43007 532 aa11.45□□□□□ -0.58
RNF4-221ENST00000513643 UBXN2AP68543 259 aa11.45□□□□□ -0.58
RNF4-221ENST00000513643 SEC23AQ15436 765 aa11.45□□□□□ -0.58
RNF4-221ENST00000513643 CCL14Q16627 93 aa11.45□□□□□ -0.58
RNF4-221ENST00000513643 CCDC178Q5BJE1 867 aa11.45□□□□□ -0.58
RNF4-221ENST00000513643 OLFML2BQ68BL8 750 aa11.45□□□□□ -0.58
RNF4-221ENST00000513643 RASGRP2Q7LDG7 609 aa11.45□□□□□ -0.58
RNF4-221ENST00000513643 FAM160B2Q86V87 743 aa11.45□□□□□ -0.58
RNF4-221ENST00000513643 NPLOC4Q8TAT6 608 aa11.45□□□□□ -0.58
RNF4-221ENST00000513643 CHURC1Q8WUH1 139 aa11.45□□□□□ -0.58
RNF4-221ENST00000513643 DCAF4Q8WV16 495 aa11.45□□□□□ -0.58
RNF4-221ENST00000513643 TMEM106CQ9BVX2 250 aa11.45□□□□□ -0.58
RNF4-221ENST00000513643 TEX13BQ9BXU2 312 aa11.45□□□□□ -0.58
RNF4-221ENST00000513643 KRT23Q9C075 422 aa11.45□□□□□ -0.58
RNF4-221ENST00000513643 CNNM2Q9H8M5 875 aa11.45□□□□□ -0.58
RNF4-221ENST00000513643 MYH4Q9Y623 1939 aa11.45□□□□□ -0.58
RNF4-221ENST00000513643 RPTORQ8N122 1335 aa11.44□□□□□ -0.58
RNF4-221ENST00000513643 DNAJC25-GNG10A0A024R161 153 aa11.44□□□□□ -0.58
RNF4-221ENST00000513643 B4E1Z4 1266 aa11.44□□□□□ -0.58
RNF4-221ENST00000513643 SGPL1O95470 568 aa11.44□□□□□ -0.58
RNF4-221ENST00000513643 ADORA2AP29274 412 aa11.44□□□□□ -0.58
RNF4-221ENST00000513643 NECTIN1Q15223 517 aa11.44□□□□□ -0.58
RNF4-221ENST00000513643 ZNF792Q3KQV3 632 aa11.44□□□□□ -0.58
RNF4-221ENST00000513643 RRP12Q5JTH9 1297 aaKnown RBP11.44□□□□□ -0.58
RNF4-221ENST00000513643 STOX1Q6ZVD7 989 aa11.44□□□□□ -0.58
RNF4-221ENST00000513643 ENAHQ8N8S7 591 aaPredicted RBP11.44□□□□□ -0.58
RNF4-221ENST00000513643 ZSCAN10Q96SZ4 725 aaPredicted RBP11.44□□□□□ -0.58
RNF4-221ENST00000513643 RNF208Q9H0X6 261 aa11.44□□□□□ -0.58
RNF4-221ENST00000513643 DIS3Q9Y2L1 958 aaKnown RBP11.44□□□□□ -0.58
RNF4-221ENST00000513643 LAMA4Q16363 1823 aa11.44□□□□□ -0.58
RNF4-221ENST00000513643 ZNF236Q9UL36 1845 aa11.44□□□□□ -0.58
RNF4-221ENST00000513643 DNAH12Q6ZR08 3092 aa11.43□□□□□ -0.58
RNF4-221ENST00000513643 ZBED4O75132 1171 aa11.43□□□□□ -0.58
RNF4-221ENST00000513643 MNX1P50219 401 aaPredicted RBP11.43□□□□□ -0.58
RNF4-221ENST00000513643 STAT2P52630 851 aa11.43□□□□□ -0.58
RNF4-221ENST00000513643 CACNB2Q08289 660 aaPredicted RBP11.43□□□□□ -0.58
RNF4-221ENST00000513643 ZNF543Q08ER8 600 aa11.43□□□□□ -0.58
RNF4-221ENST00000513643 LHX8Q68G74 356 aa11.43□□□□□ -0.58
RNF4-221ENST00000513643 TTBK2Q6IQ55 1244 aa11.43□□□□□ -0.58
RNF4-221ENST00000513643 KCTD1Q719H9 257 aa11.43□□□□□ -0.58
RNF4-221ENST00000513643 CYB5R4Q7L1T6 521 aa11.43□□□□□ -0.58
RNF4-221ENST00000513643 CCAR1Q8IX12 1150 aaKnown RBP11.43□□□□□ -0.58
RNF4-221ENST00000513643 U2AF1L4Q8WU68 220 aaKnown RBP11.43□□□□□ -0.58
RNF4-221ENST00000513643 KIFC2Q96AC6 838 aa11.43□□□□□ -0.58
RNF4-221ENST00000513643 TOMM22Q9NS69 142 aa11.43□□□□□ -0.58
RNF4-221ENST00000513643 PPP4R2Q9NY27 417 aa11.43□□□□□ -0.58
RNF4-221ENST00000513643 PRR12Q9ULL5 1215 aa11.43□□□□□ -0.58
RNF4-221ENST00000513643 RBM8AQ9Y5S9 174 aaKnown RBP11.43□□□□□ -0.58
RNF4-221ENST00000513643 IVNS1ABPQ9Y6Y0 642 aa11.43□□□□□ -0.58
RNF4-221ENST00000513643 RANBP2P49792 3224 aaKnown RBP11.42□□□□□ -0.58
RNF4-221ENST00000513643 E7EWF7 191 aa11.42□□□□□ -0.58
RNF4-221ENST00000513643 RAD21O60216 631 aa11.42□□□□□ -0.58
RNF4-221ENST00000513643 FCER1AP12319 257 aa11.42□□□□□ -0.58
RNF4-221ENST00000513643 PRKAR2AP13861 404 aaKnown RBP11.42□□□□□ -0.58
RNF4-221ENST00000513643 ZKSCAN1P17029 563 aaPredicted RBP11.42□□□□□ -0.58
RNF4-221ENST00000513643 PLS1Q14651 629 aa11.42□□□□□ -0.58
RNF4-221ENST00000513643 SNRNP48Q6IEG0 339 aaKnown RBP11.42□□□□□ -0.58
RNF4-221ENST00000513643 IQCA1Q86XH1 822 aa11.42□□□□□ -0.58
RNF4-221ENST00000513643 NCAPG2Q86XI2 1143 aa11.42□□□□□ -0.58
RNF4-221ENST00000513643 TRPV1Q8NER1 839 aa11.42□□□□□ -0.58
RNF4-221ENST00000513643 CHST13Q8NET6 341 aa11.42□□□□□ -0.58
RNF4-221ENST00000513643 MAML3Q96JK9 1138 aa11.42□□□□□ -0.58
RNF4-221ENST00000513643 FGD4Q96M96 766 aa11.42□□□□□ -0.58
RNF4-221ENST00000513643 ZKSCAN3Q9BRR0 538 aa11.42□□□□□ -0.58
RNF4-221ENST00000513643 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.42□□□□□ -0.58
RNF4-221ENST00000513643 RANBP17Q9H2T7 1088 aaKnown RBP11.42□□□□□ -0.58
RNF4-221ENST00000513643 RAVER2Q9HCJ3 691 aaKnown RBP11.42□□□□□ -0.58
RNF4-221ENST00000513643 BIN2Q9UBW5 565 aaPredicted RBP11.42□□□□□ -0.58
RNF4-221ENST00000513643 OGDHLQ9ULD0 1010 aa11.42□□□□□ -0.58
RNF4-221ENST00000513643 CEP290O15078 2479 aa11.42□□□□□ -0.58
RNF4-221ENST00000513643 TNKSO95271 1327 aa11.41□□□□□ -0.58
RNF4-221ENST00000513643 MYCP01106 439 aaPredicted RBP11.41□□□□□ -0.58
RNF4-221ENST00000513643 ANTXR2P58335 489 aa11.41□□□□□ -0.58
RNF4-221ENST00000513643 COL9A3Q14050 684 aaPredicted RBP11.41□□□□□ -0.58
RNF4-221ENST00000513643 TSGA10IPQ3SY00 556 aa11.41□□□□□ -0.58
RNF4-221ENST00000513643 MAMDC4Q6UXC1 1216 aa11.41□□□□□ -0.58
RNF4-221ENST00000513643 MB21D2Q8IYB1 491 aaPredicted RBP11.41□□□□□ -0.58
RNF4-221ENST00000513643 PNMA1Q8ND90 353 aa11.41□□□□□ -0.58
RNF4-221ENST00000513643 IGDCC4Q8TDY8 1250 aa11.41□□□□□ -0.58
RNF4-221ENST00000513643 KCNB2Q92953 911 aa11.41□□□□□ -0.58
RNF4-221ENST00000513643 DEFB118Q96PH6 123 aa11.41□□□□□ -0.58
RNF4-221ENST00000513643 MTA3Q9BTC8 594 aa11.41□□□□□ -0.58
RNF4-221ENST00000513643 HMX1Q9NP08 348 aaPredicted RBP11.41□□□□□ -0.58
RNF4-221ENST00000513643 COL11A1P12107 1806 aaPredicted RBP11.41□□□□□ -0.58
RNF4-221ENST00000513643 SLC27A2O14975 620 aa11.4□□□□□ -0.58
RNF4-221ENST00000513643 CDC45O75419 566 aa11.4□□□□□ -0.58
RNF4-221ENST00000513643 ICAM1P05362 532 aa11.4□□□□□ -0.58
RNF4-221ENST00000513643 NEFLP07196 543 aa11.4□□□□□ -0.58
RNF4-221ENST00000513643 CENPBP07199 599 aaPredicted RBP11.4□□□□□ -0.58
RNF4-221ENST00000513643 CYBAP13498 195 aa11.4□□□□□ -0.58
RNF4-221ENST00000513643 CCND3P30281 292 aaPredicted RBP11.4□□□□□ -0.58
RNF4-221ENST00000513643 SLC16A2P36021 539 aa11.4□□□□□ -0.58
RNF4-221ENST00000513643 TKFCQ3LXA3 575 aa11.4□□□□□ -0.58
RNF4-221ENST00000513643 GPATCH4Q5T3I0 446 aaKnown RBP11.4□□□□□ -0.58
RNF4-221ENST00000513643 SYDE2Q5VT97 1194 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms