RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 BMP1P13497 986 aa13.25□□□□□ -0.29
DDX41-216ENST00000513562 PDE6AP16499 860 aa13.25□□□□□ -0.29
DDX41-216ENST00000513562 ATP8B2P98198 1209 aa13.25□□□□□ -0.29
DDX41-216ENST00000513562 PCSK9Q8NBP7 692 aaKnown RBP13.25□□□□□ -0.29
DDX41-216ENST00000513562 SDR42E1Q8WUS8 393 aa13.25□□□□□ -0.29
DDX41-216ENST00000513562 DYNLL2Q96FJ2 89 aa13.25□□□□□ -0.29
DDX41-216ENST00000513562 PPP1R12CQ9BZL4 782 aa13.25□□□□□ -0.29
DDX41-216ENST00000513562 TSPYL2Q9H2G4 693 aaPredicted RBP13.25□□□□□ -0.29
DDX41-216ENST00000513562 MTIF3Q9H2K0 278 aaKnown RBP13.25□□□□□ -0.29
DDX41-216ENST00000513562 NKX2-4Q9H2Z4 354 aa13.25□□□□□ -0.29
DDX41-216ENST00000513562 SLC28A3Q9HAS3 691 aa13.25□□□□□ -0.29
DDX41-216ENST00000513562 IL23AQ9NPF7 189 aa13.25□□□□□ -0.29
DDX41-216ENST00000513562 ZHX1Q9UKY1 873 aaPredicted RBP13.25□□□□□ -0.29
DDX41-216ENST00000513562 DNAJC25-GNG10A0A024R161 153 aa13.24□□□□□ -0.29
DDX41-216ENST00000513562 ADCY6O43306 1168 aa13.24□□□□□ -0.29
DDX41-216ENST00000513562 BCAR3O75815 825 aa13.24□□□□□ -0.29
DDX41-216ENST00000513562 C6orf222P0C671 652 aaPredicted RBP13.24□□□□□ -0.29
DDX41-216ENST00000513562 IRX5P78411 483 aaPredicted RBP13.24□□□□□ -0.29
DDX41-216ENST00000513562 CLUAP1Q96AJ1 413 aa13.24□□□□□ -0.29
DDX41-216ENST00000513562 CCDC17Q96LX7 622 aa13.24□□□□□ -0.29
DDX41-216ENST00000513562 UPF3AQ9H1J1 476 aaKnown RBP13.24□□□□□ -0.29
DDX41-216ENST00000513562 REV3LO60673 3130 aa13.24□□□□□ -0.29
DDX41-216ENST00000513562 NAV1Q8NEY1 1877 aa13.23□□□□□ -0.29
DDX41-216ENST00000513562 MYO5AQ9Y4I1 1855 aaKnown RBP13.23□□□□□ -0.29
DDX41-216ENST00000513562 APBB1O00213 710 aa13.23□□□□□ -0.29
DDX41-216ENST00000513562 TLR3O15455 904 aaKnown RBP13.23□□□□□ -0.29
DDX41-216ENST00000513562 CD4P01730 458 aa13.23□□□□□ -0.29
DDX41-216ENST00000513562 EEF2P13639 858 aaKnown RBP13.23□□□□□ -0.29
DDX41-216ENST00000513562 GJA9P57773 515 aa13.23□□□□□ -0.29
DDX41-216ENST00000513562 TFF2Q03403 129 aa13.23□□□□□ -0.29
DDX41-216ENST00000513562 TTF1Q15361 905 aaPredicted RBP13.23□□□□□ -0.29
DDX41-216ENST00000513562 SLC9C2Q5TAH2 1124 aa13.23□□□□□ -0.29
DDX41-216ENST00000513562 ZNF467Q7Z7K2 595 aaPredicted RBP13.23□□□□□ -0.29
DDX41-216ENST00000513562 LCORLQ8N3X6 602 aa13.23□□□□□ -0.29
DDX41-216ENST00000513562 TMEM57Q8N5G2 664 aa13.23□□□□□ -0.29
DDX41-216ENST00000513562 TEX13BQ9BXU2 312 aa13.23□□□□□ -0.29
DDX41-216ENST00000513562 ZNF532Q9HCE3 1301 aa13.22□□□□□ -0.29
DDX41-216ENST00000513562 TCRBV5S4A2TA0A5A2 114 aa13.22□□□□□ -0.29
DDX41-216ENST00000513562 FGBP02675 491 aa13.22□□□□□ -0.29
DDX41-216ENST00000513562 CYP2C18P33260 490 aa13.22□□□□□ -0.29
DDX41-216ENST00000513562 NKX3-2P78367 333 aa13.22□□□□□ -0.29
DDX41-216ENST00000513562 ACVR2BQ13705 512 aa13.22□□□□□ -0.29
DDX41-216ENST00000513562 AAK1Q2M2I8 961 aa13.22□□□□□ -0.29
DDX41-216ENST00000513562 FRAT1Q92837 279 aaPredicted RBP13.22□□□□□ -0.29
DDX41-216ENST00000513562 VTI1AQ96AJ9 217 aa13.22□□□□□ -0.29
DDX41-216ENST00000513562 SPC25Q9HBM1 224 aa13.22□□□□□ -0.29
DDX41-216ENST00000513562 GOPCQ9HD26 462 aa13.22□□□□□ -0.29
DDX41-216ENST00000513562 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.22□□□□□ -0.29
DDX41-216ENST00000513562 HCN4Q9Y3Q4 1203 aa13.22□□□□□ -0.29
DDX41-216ENST00000513562 ERC2O15083 957 aa13.21□□□□□ -0.29
DDX41-216ENST00000513562 CTAGE5O15320 804 aa13.21□□□□□ -0.29
DDX41-216ENST00000513562 CDK8P49336 464 aa13.21□□□□□ -0.29
DDX41-216ENST00000513562 KCNQ1P51787 676 aa13.21□□□□□ -0.29
DDX41-216ENST00000513562 CCDC144BQ3MJ40 725 aa13.21□□□□□ -0.29
DDX41-216ENST00000513562 GNASQ5JWF2 1037 aa13.21□□□□□ -0.29
DDX41-216ENST00000513562 FAM83BQ5T0W9 1011 aa13.21□□□□□ -0.29
DDX41-216ENST00000513562 PPP2R2DQ66LE6 453 aa13.21□□□□□ -0.29
DDX41-216ENST00000513562 SNRNP48Q6IEG0 339 aaKnown RBP13.21□□□□□ -0.29
DDX41-216ENST00000513562 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.21□□□□□ -0.29
DDX41-216ENST00000513562 MICALL1Q8N3F8 863 aa13.21□□□□□ -0.29
DDX41-216ENST00000513562 SLC43A3Q8NBI5 491 aa13.21□□□□□ -0.29
DDX41-216ENST00000513562 DDX11Q96FC9 970 aa13.21□□□□□ -0.29
DDX41-216ENST00000513562 FGD4Q96M96 766 aa13.21□□□□□ -0.29
DDX41-216ENST00000513562 ABHD16BQ9H3Z7 469 aa13.21□□□□□ -0.29
DDX41-216ENST00000513562 HIPK3Q9H422 1215 aa13.21□□□□□ -0.29
DDX41-216ENST00000513562 C1orf115Q9H7X2 142 aa13.21□□□□□ -0.29
DDX41-216ENST00000513562 KANSL2Q9H9L4 492 aa13.21□□□□□ -0.29
DDX41-216ENST00000513562 RIPK3Q9Y572 518 aa13.21□□□□□ -0.29
DDX41-216ENST00000513562 UMODL1Q5DID0 1318 aa13.2□□□□□ -0.3
DDX41-216ENST00000513562 SMIM22K7EJ46 135 aa13.2□□□□□ -0.3
DDX41-216ENST00000513562 ATP2A1O14983 1001 aa13.2□□□□□ -0.3
DDX41-216ENST00000513562 RABGGTBP53611 331 aa13.2□□□□□ -0.3
DDX41-216ENST00000513562 C12orf60Q5U649 245 aa13.2□□□□□ -0.3
DDX41-216ENST00000513562 C16orf86Q6ZW13 317 aa13.2□□□□□ -0.3
DDX41-216ENST00000513562 OTOP2Q7RTS6 562 aa13.2□□□□□ -0.3
DDX41-216ENST00000513562 AACSQ86V21 672 aa13.2□□□□□ -0.3
DDX41-216ENST00000513562 SLF1Q9BQI6 1058 aa13.2□□□□□ -0.3
DDX41-216ENST00000513562 LRFN3Q9BTN0 628 aa13.2□□□□□ -0.3
DDX41-216ENST00000513562 ARMT1Q9H993 441 aa13.2□□□□□ -0.3
DDX41-216ENST00000513562 ATP8A2Q9NTI2 1148 aa13.2□□□□□ -0.3
DDX41-216ENST00000513562 PCDHA11Q9Y5I1 949 aa13.2□□□□□ -0.3
DDX41-216ENST00000513562 PARP14Q460N5 1801 aa13.2□□□□□ -0.3
DDX41-216ENST00000513562 PRKAB2O43741 272 aa13.19□□□□□ -0.3
DDX41-216ENST00000513562 MYOGP15173 224 aa13.19□□□□□ -0.3
DDX41-216ENST00000513562 POU3F3P20264 500 aaPredicted RBP13.19□□□□□ -0.3
DDX41-216ENST00000513562 ARMCX2Q7L311 632 aa13.19□□□□□ -0.3
DDX41-216ENST00000513562 KATNBL1Q9H079 304 aa13.19□□□□□ -0.3
DDX41-216ENST00000513562 EPHX3Q9H6B9 360 aa13.19□□□□□ -0.3
DDX41-216ENST00000513562 CYP2D7A0A087X1C5 515 aa13.18□□□□□ -0.3
DDX41-216ENST00000513562 RAD21O60216 631 aa13.18□□□□□ -0.3
DDX41-216ENST00000513562 MBD4O95243 580 aa13.18□□□□□ -0.3
DDX41-216ENST00000513562 SKIV2LQ15477 1246 aaKnown RBP13.18□□□□□ -0.3
DDX41-216ENST00000513562 TMEM31Q5JXX7 168 aa13.18□□□□□ -0.3
DDX41-216ENST00000513562 ERC1Q8IUD2 1116 aa13.18□□□□□ -0.3
DDX41-216ENST00000513562 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.18□□□□□ -0.3
DDX41-216ENST00000513562 VWCEQ96DN2 955 aa13.18□□□□□ -0.3
DDX41-216ENST00000513562 NUP88Q99567 741 aaPredicted RBP13.18□□□□□ -0.3
DDX41-216ENST00000513562 NOC4LQ9BVI4 516 aaKnown RBP13.18□□□□□ -0.3
DDX41-216ENST00000513562 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.18□□□□□ -0.3
DDX41-216ENST00000513562 WNT8AQ9H1J5 351 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms