RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 IFT140Q96RY7 1462 aa5.91□□□□□ -1.46
NUP54-212ENST00000513248 TOPBP1Q92547 1522 aa5.91□□□□□ -1.46
NUP54-212ENST00000513248 B8ZZF3 427 aa5.91□□□□□ -1.46
NUP54-212ENST00000513248 SRFP11831 508 aa5.91□□□□□ -1.46
NUP54-212ENST00000513248 POLR2BP30876 1174 aaKnown RBP5.91□□□□□ -1.46
NUP54-212ENST00000513248 EIF6P56537 245 aaKnown RBP5.91□□□□□ -1.46
NUP54-212ENST00000513248 KCNA10Q16322 511 aa5.91□□□□□ -1.46
NUP54-212ENST00000513248 RUFY4Q6ZNE9 571 aa5.91□□□□□ -1.46
NUP54-212ENST00000513248 TMEM192Q8IY95 271 aa5.91□□□□□ -1.46
NUP54-212ENST00000513248 UBE2FQ969M7 185 aa5.91□□□□□ -1.46
NUP54-212ENST00000513248 DIRC2Q96SL1 478 aa5.91□□□□□ -1.46
NUP54-212ENST00000513248 EPB41L4BQ9H329 900 aa5.91□□□□□ -1.46
NUP54-212ENST00000513248 NPIPB6E9PJ23 425 aa5.9□□□□□ -1.46
NUP54-212ENST00000513248 LRRN2O75325 713 aa5.9□□□□□ -1.46
NUP54-212ENST00000513248 GUCY2CP25092 1073 aa5.9□□□□□ -1.46
NUP54-212ENST00000513248 ETFBP38117 255 aa5.9□□□□□ -1.46
NUP54-212ENST00000513248 ZYXQ15942 572 aaKnown RBP5.9□□□□□ -1.46
NUP54-212ENST00000513248 TMPRSS7Q7RTY8 843 aa5.9□□□□□ -1.46
NUP54-212ENST00000513248 ABHD4Q8TB40 342 aa5.9□□□□□ -1.46
NUP54-212ENST00000513248 GPR62Q9BZJ7 368 aa5.9□□□□□ -1.46
NUP54-212ENST00000513248 DUSP15Q9H1R2 295 aaPredicted RBP5.9□□□□□ -1.46
NUP54-212ENST00000513248 TRIT1Q9H3H1 467 aaKnown RBP5.9□□□□□ -1.46
NUP54-212ENST00000513248 DCP1AQ9NPI6 582 aaPredicted RBP5.9□□□□□ -1.46
NUP54-212ENST00000513248 LTBP3Q9NS15 1303 aa5.9□□□□□ -1.47
NUP54-212ENST00000513248 PRDM2Q13029 1718 aa5.9□□□□□ -1.47
NUP54-212ENST00000513248 DNMBPQ6XZF7 1577 aa5.89□□□□□ -1.47
NUP54-212ENST00000513248 A0A1W2PQH9 124 aa5.89□□□□□ -1.47
NUP54-212ENST00000513248 TCAF2A6NFQ2 919 aa5.89□□□□□ -1.47
NUP54-212ENST00000513248 RNF4P78317 190 aa5.89□□□□□ -1.47
NUP54-212ENST00000513248 RBL2Q08999 1139 aa5.89□□□□□ -1.47
NUP54-212ENST00000513248 NBPF12Q5TAG4 269 aaPredicted RBP5.89□□□□□ -1.47
NUP54-212ENST00000513248 CIAPIN1Q6FI81 312 aa5.89□□□□□ -1.47
NUP54-212ENST00000513248 UNC5AQ6ZN44 842 aa5.89□□□□□ -1.47
NUP54-212ENST00000513248 ATG14Q6ZNE5 492 aa5.89□□□□□ -1.47
NUP54-212ENST00000513248 ARMC5Q96C12 935 aa5.89□□□□□ -1.47
NUP54-212ENST00000513248 SLC26A8Q96RN1 970 aa5.89□□□□□ -1.47
NUP54-212ENST00000513248 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.89□□□□□ -1.473e-9■□□□□ 10
NUP54-212ENST00000513248 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.89□□□□□ -1.47
NUP54-212ENST00000513248 ZNF408Q9H9D4 720 aa5.89□□□□□ -1.47
NUP54-212ENST00000513248 GPATCH2Q9NW75 528 aa5.89□□□□□ -1.47
NUP54-212ENST00000513248 SOGA1O94964 1423 aa5.89□□□□□ -1.47
NUP54-212ENST00000513248 WASH4PA8MWX3 477 aa5.88□□□□□ -1.47
NUP54-212ENST00000513248 KLF4O43474 513 aa5.88□□□□□ -1.47
NUP54-212ENST00000513248 ESR1P03372 595 aa5.88□□□□□ -1.47
NUP54-212ENST00000513248 TPP2P29144 1249 aaPredicted RBP5.88□□□□□ -1.47
NUP54-212ENST00000513248 DNAJA1P31689 397 aaKnown RBP5.88□□□□□ -1.47
NUP54-212ENST00000513248 GAB4Q2WGN9 574 aa5.88□□□□□ -1.47
NUP54-212ENST00000513248 KRTAP9-3Q9BYQ3 159 aa5.88□□□□□ -1.47
NUP54-212ENST00000513248 SLAMF8Q9P0V8 285 aa5.88□□□□□ -1.47
NUP54-212ENST00000513248 PRKAG3Q9UGI9 489 aa5.88□□□□□ -1.47
NUP54-212ENST00000513248 TMEM59LQ9UK28 342 aa5.88□□□□□ -1.47
NUP54-212ENST00000513248 ZNF608Q9ULD9 1512 aaPredicted RBP5.88□□□□□ -1.47
NUP54-212ENST00000513248 CLEC3AO75596 197 aa5.87□□□□□ -1.47
NUP54-212ENST00000513248 HPXP02790 462 aa5.87□□□□□ -1.47
NUP54-212ENST00000513248 FBXW10Q5XX13 1052 aa5.87□□□□□ -1.47
NUP54-212ENST00000513248 TTC6Q86TZ1 520 aa5.87□□□□□ -1.47
NUP54-212ENST00000513248 TSPYL5Q86VY4 417 aaPredicted RBP5.87□□□□□ -1.47
NUP54-212ENST00000513248 PPFIBP1Q86W92 1011 aa5.87□□□□□ -1.47
NUP54-212ENST00000513248 CREG2Q8IUH2 290 aa5.87□□□□□ -1.47
NUP54-212ENST00000513248 MYLIPQ8WY64 445 aa5.87□□□□□ -1.47
NUP54-212ENST00000513248 CRBNQ96SW2 442 aa5.87□□□□□ -1.47
NUP54-212ENST00000513248 SUCOQ9UBS9 1254 aaKnown RBP5.87□□□□□ -1.47
NUP54-212ENST00000513248 DUSP13Q9UII6 198 aa5.87□□□□□ -1.47
NUP54-212ENST00000513248 ZNF214Q9UL59 606 aaPredicted RBP5.87□□□□□ -1.47
NUP54-212ENST00000513248 AQRO60306 1485 aaKnown RBP eCLIP5.86□□□□□ -1.47
NUP54-212ENST00000513248 TDRD9Q8NDG6 1382 aaKnown RBP5.86□□□□□ -1.47
NUP54-212ENST00000513248 ETV2O00321 342 aaPredicted RBP5.86□□□□□ -1.47
NUP54-212ENST00000513248 SHOXO15266 292 aa5.86□□□□□ -1.47
NUP54-212ENST00000513248 INHBBP09529 407 aa5.86□□□□□ -1.47
NUP54-212ENST00000513248 PMS1P54277 932 aaKnown RBP5.86□□□□□ -1.47
NUP54-212ENST00000513248 LINC00310P59036 64 aa5.86□□□□□ -1.47
NUP54-212ENST00000513248 NBPF9Q3BBW0 867 aa5.86□□□□□ -1.47
NUP54-212ENST00000513248 ANKRD39Q53RE8 183 aa5.86□□□□□ -1.47
NUP54-212ENST00000513248 SLC6A18Q96N87 628 aa5.86□□□□□ -1.47
NUP54-212ENST00000513248 SMG5Q9UPR3 1016 aaKnown RBP5.86□□□□□ -1.47
NUP54-212ENST00000513248 POLA1P09884 1462 aaPredicted RBP5.85□□□□□ -1.47
NUP54-212ENST00000513248 RAD54L2Q9Y4B4 1467 aa5.85□□□□□ -1.47
NUP54-212ENST00000513248 DNAJC25-GNG10A0A024R161 153 aa5.85□□□□□ -1.47
NUP54-212ENST00000513248 SHISA3A0PJX4 238 aa5.85□□□□□ -1.47
NUP54-212ENST00000513248 C9IYK1 514 aa5.85□□□□□ -1.47
NUP54-212ENST00000513248 SMAD7O15105 426 aaKnown RBP5.85□□□□□ -1.47
NUP54-212ENST00000513248 LTKP29376 864 aa5.85□□□□□ -1.47
NUP54-212ENST00000513248 NMIQ13287 307 aaPredicted RBP5.85□□□□□ -1.47
NUP54-212ENST00000513248 CLEC16AQ2KHT3 1053 aa5.85□□□□□ -1.47
NUP54-212ENST00000513248 CPLX3Q8WVH0 158 aa5.85□□□□□ -1.47
NUP54-212ENST00000513248 SREK1Q8WXA9 508 aaKnown RBP5.85□□□□□ -1.47
NUP54-212ENST00000513248 KLHL6Q8WZ60 621 aa5.85□□□□□ -1.47
NUP54-212ENST00000513248 ANAPC16Q96DE5 110 aa5.85□□□□□ -1.47
NUP54-212ENST00000513248 ZNF512BQ96KM6 892 aaPredicted RBP5.85□□□□□ -1.47
NUP54-212ENST00000513248 ASCC2Q9H1I8 757 aaPredicted RBP5.85□□□□□ -1.47
NUP54-212ENST00000513248 SLC12A7Q9Y666 1083 aa5.85□□□□□ -1.47
NUP54-212ENST00000513248 MRVI1Q9Y6F6 885 aa5.85□□□□□ -1.47
NUP54-212ENST00000513248 FGD5Q6ZNL6 1462 aa5.84□□□□□ -1.47
NUP54-212ENST00000513248 FAM86C2PA6NEL3 165 aa5.84□□□□□ -1.47
NUP54-212ENST00000513248 SSBP05455 408 aaKnown RBP eCLIP5.84□□□□□ -1.47
NUP54-212ENST00000513248 BUD31P41223 144 aaPredicted RBP5.84□□□□□ -1.47
NUP54-212ENST00000513248 CTSWP56202 376 aa5.84□□□□□ -1.47
NUP54-212ENST00000513248 EGR3Q06889 387 aa5.84□□□□□ -1.47
NUP54-212ENST00000513248 TNNI3KQ59H18 835 aa5.84□□□□□ -1.47
NUP54-212ENST00000513248 RALGPS1Q5JS13 557 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms