RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 PLAAQ9Y263 795 aa13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 U3KPZ7 1027 aaPredicted RBP13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 FOXO3O43524 673 aa13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 KRT86O43790 486 aa13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 ZNF189O75820 626 aaPredicted RBP13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 ATP2A2P16615 1042 aaKnown RBP13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 MYBPC3Q14896 1274 aa13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 SMCR8Q8TEV9 937 aaPredicted RBP13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 PREBQ9HCU5 417 aa13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 GPHNQ9NQX3 736 aaPredicted RBP13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 GALNT8Q9NY28 637 aa13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 CYP27B1O15528 508 aa13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 PAX3P23760 479 aa13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 CCND1P24385 295 aa13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 CNGA1P29973 690 aa13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 ALDH5A1P51649 535 aaPredicted RBP13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 GUCY2DQ02846 1103 aa13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 TMEM154Q6P9G4 183 aa13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 SMYD4Q8IYR2 804 aaPredicted RBP13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 CCDC197Q8NCU1 140 aa13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 ZFAND2BQ8WV99 257 aa13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 LACRTQ9GZZ8 138 aa13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 RHBDL2Q9NX52 303 aa13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 MAPK8IP1Q9UQF2 711 aa13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 HPSEQ9Y251 543 aa13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 POLR2DO15514 142 aaKnown RBP13.34□□□□□ -0.27
LIMCH1-213ENST00000511496 RIPK1Q13546 671 aa13.34□□□□□ -0.27
LIMCH1-213ENST00000511496 TSR1Q2NL82 804 aaKnown RBP13.34□□□□□ -0.27
LIMCH1-213ENST00000511496 LMNTD2Q8IXW0 634 aa13.34□□□□□ -0.27
LIMCH1-213ENST00000511496 ELOA2Q8IYF1 753 aaPredicted RBP13.34□□□□□ -0.27
LIMCH1-213ENST00000511496 MMGT1Q8N4V1 131 aa13.34□□□□□ -0.27
LIMCH1-213ENST00000511496 MAIP1Q8WWC4 291 aa13.34□□□□□ -0.27
LIMCH1-213ENST00000511496 PPP1R12CQ9BZL4 782 aa13.34□□□□□ -0.27
LIMCH1-213ENST00000511496 PHAXQ9H814 394 aaKnown RBP13.34□□□□□ -0.27
LIMCH1-213ENST00000511496 DLGAP2Q9P1A6 1054 aa13.34□□□□□ -0.27
LIMCH1-213ENST00000511496 ABCF2Q9UG63 623 aa13.34□□□□□ -0.27
LIMCH1-213ENST00000511496 SERTAD1Q9UHV2 236 aa13.34□□□□□ -0.27
LIMCH1-213ENST00000511496 QRICH2Q9H0J4 1663 aa13.34□□□□□ -0.27
LIMCH1-213ENST00000511496 SETD1AO15047 1707 aaKnown RBP13.34□□□□□ -0.27
LIMCH1-213ENST00000511496 hCG_2014768A0A024R1R8 64 aa13.34□□□□□ -0.27
LIMCH1-213ENST00000511496 GCOM1H8Y6P7 765 aaPredicted RBP13.34□□□□□ -0.27
LIMCH1-213ENST00000511496 CPLX1O14810 134 aa13.34□□□□□ -0.27
LIMCH1-213ENST00000511496 MAFGO15525 162 aa13.34□□□□□ -0.27
LIMCH1-213ENST00000511496 ZPR1O75312 459 aa13.34□□□□□ -0.27
LIMCH1-213ENST00000511496 MYZAPP0CAP1 466 aa13.34□□□□□ -0.27
LIMCH1-213ENST00000511496 GHRP10912 638 aa13.34□□□□□ -0.27
LIMCH1-213ENST00000511496 RFC5P40937 340 aa13.34□□□□□ -0.27
LIMCH1-213ENST00000511496 MPP3Q13368 585 aa13.34□□□□□ -0.27
LIMCH1-213ENST00000511496 ADAM9Q13443 819 aa13.34□□□□□ -0.27
LIMCH1-213ENST00000511496 ANO7Q6IWH7 933 aa13.34□□□□□ -0.27
LIMCH1-213ENST00000511496 ATL2Q8NHH9 583 aa13.34□□□□□ -0.27
LIMCH1-213ENST00000511496 CAVIN3Q969G5 261 aa13.34□□□□□ -0.27
LIMCH1-213ENST00000511496 TLR7Q9NYK1 1049 aaKnown RBP13.34□□□□□ -0.27
LIMCH1-213ENST00000511496 GALNT17Q6IS24 598 aa13.33□□□□□ -0.27
LIMCH1-213ENST00000511496 CHADLQ6NUI6 762 aa13.33□□□□□ -0.27
LIMCH1-213ENST00000511496 ANKS4BQ8N8V4 417 aa13.33□□□□□ -0.27
LIMCH1-213ENST00000511496 RPS6KC1Q96S38 1066 aa13.33□□□□□ -0.27
LIMCH1-213ENST00000511496 KIAA1210Q9ULL0 1709 aa13.33□□□□□ -0.28
LIMCH1-213ENST00000511496 HGSO14964 777 aaPredicted RBP13.33□□□□□ -0.28
LIMCH1-213ENST00000511496 PARP1P09874 1014 aaKnown RBP13.33□□□□□ -0.28
LIMCH1-213ENST00000511496 HERVK_113P62684 666 aa13.33□□□□□ -0.28
LIMCH1-213ENST00000511496 G3BP1Q13283 466 aaKnown RBP eCLIP13.33□□□□□ -0.28
LIMCH1-213ENST00000511496 HAUS3Q68CZ6 603 aa13.33□□□□□ -0.28
LIMCH1-213ENST00000511496 TAX1BP1Q86VP1 789 aa13.33□□□□□ -0.28
LIMCH1-213ENST00000511496 CREG2Q8IUH2 290 aa13.33□□□□□ -0.28
LIMCH1-213ENST00000511496 PUS7Q96PZ0 661 aaKnown RBP13.33□□□□□ -0.28
LIMCH1-213ENST00000511496 TAF1DQ9H5J8 278 aaPredicted RBP13.33□□□□□ -0.28
LIMCH1-213ENST00000511496 ARHGAP5Q13017 1502 aa13.33□□□□□ -0.28
LIMCH1-213ENST00000511496 LMTK2Q8IWU2 1503 aa13.33□□□□□ -0.28
LIMCH1-213ENST00000511496 CYP27A1Q02318 531 aa13.33□□□□□ -0.28
LIMCH1-213ENST00000511496 APTXQ7Z2E3 356 aaKnown RBP13.33□□□□□ -0.28
LIMCH1-213ENST00000511496 IFT20Q8IY31 132 aa13.33□□□□□ -0.28
LIMCH1-213ENST00000511496 MDM1Q8TC05 714 aa13.33□□□□□ -0.28
LIMCH1-213ENST00000511496 INCENPQ9NQS7 918 aa13.33□□□□□ -0.28
LIMCH1-213ENST00000511496 TAB2Q9NYJ8 693 aa13.33□□□□□ -0.28
LIMCH1-213ENST00000511496 GLI1P08151 1106 aa13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 HLTFQ14527 1009 aaKnown RBP eCLIP13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 P3H4Q92791 437 aa13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 NOVA2Q9UNW9 492 aaKnown RBP13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 AGAP1Q9UPQ3 857 aa13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 RCCD1A6NED2 376 aa13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 NQO1P15559 274 aaKnown RBP13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 CASP1P29466 404 aa13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 PBX1P40424 430 aa13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 GNAQP50148 359 aa13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 PLCD1P51178 756 aa13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 ZNF268Q14587 947 aaPredicted RBP13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 TRADDQ15628 312 aa13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 CDC37Q16543 378 aaPredicted RBP13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 FAM114A1Q8IWE2 563 aa13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 EAF2Q96CJ1 260 aaPredicted RBP13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 AIFM3Q96NN9 605 aa13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 IQCGQ9H095 443 aaKnown RBP13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 CNOT8Q9UFF9 292 aaKnown RBP13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 USP42Q9H9J4 1324 aaKnown RBP13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 HEXIM1O94992 359 aaKnown RBP13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 PAFAH1B1P43034 410 aa13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 AFMP43652 599 aa13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 TAF7Q15545 349 aaPredicted RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms