RNA–Protein interactions for RNA: ENST00000509409.5

TPM3-219, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 1,248 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-219ENST00000509409 CCDC129Q6ZRS4 1044 aa18.29■□□□□ 0.52
TPM3-219ENST00000509409 NEDD1Q8NHV4 660 aa18.29■□□□□ 0.52
TPM3-219ENST00000509409 CHMP4CQ96CF2 233 aa18.29■□□□□ 0.52
TPM3-219ENST00000509409 RAVER2Q9HCJ3 691 aaKnown RBP18.29■□□□□ 0.52
TPM3-219ENST00000509409 NRBP1Q9UHY1 535 aa18.29■□□□□ 0.52
TPM3-219ENST00000509409 ALPK3Q96L96 1907 aa18.29■□□□□ 0.52
TPM3-219ENST00000509409 RLFQ13129 1914 aa18.28■□□□□ 0.52
TPM3-219ENST00000509409 ADCYAP1R1P41586 468 aa18.28■□□□□ 0.52
TPM3-219ENST00000509409 IKQ13123 557 aaPredicted RBP18.28■□□□□ 0.52
TPM3-219ENST00000509409 FERMT2Q96AC1 680 aa18.28■□□□□ 0.52
TPM3-219ENST00000509409 EVI5LQ96CN4 794 aa18.28■□□□□ 0.52
TPM3-219ENST00000509409 YTHDC1Q96MU7 727 aaKnown RBP18.28■□□□□ 0.52
TPM3-219ENST00000509409 CNPY2Q9Y2B0 182 aa18.28■□□□□ 0.52
TPM3-219ENST00000509409 RIPK3Q9Y572 518 aa18.28■□□□□ 0.52
TPM3-219ENST00000509409 SZT2Q5T011 3432 aa18.27■□□□□ 0.52
TPM3-219ENST00000509409 BMP3P12645 472 aa18.27■□□□□ 0.52
TPM3-219ENST00000509409 TAL1P17542 331 aaPredicted RBP18.27■□□□□ 0.52
TPM3-219ENST00000509409 CTDSPL2Q05D32 466 aa18.27■□□□□ 0.52
TPM3-219ENST00000509409 PPP4R3BQ5MIZ7 849 aa18.27■□□□□ 0.52
TPM3-219ENST00000509409 GMCL1P1Q8NEA9 526 aa18.27■□□□□ 0.52
TPM3-219ENST00000509409 XPNPEP3Q9NQH7 507 aa18.27■□□□□ 0.52
TPM3-219ENST00000509409 SYNPO2Q9UMS6 1093 aa18.27■□□□□ 0.52
TPM3-219ENST00000509409 TSPY2A6NKD2 308 aa18.26■□□□□ 0.51
TPM3-219ENST00000509409 TMEM232C9JQI7 657 aa18.26■□□□□ 0.51
TPM3-219ENST00000509409 LRIT3Q3SXY7 679 aa18.26■□□□□ 0.51
TPM3-219ENST00000509409 RNF180Q86T96 592 aa18.26■□□□□ 0.51
TPM3-219ENST00000509409 ANKRD35Q8N283 1001 aa18.26■□□□□ 0.51
TPM3-219ENST00000509409 SLC38A10Q9HBR0 1119 aa18.26■□□□□ 0.51
TPM3-219ENST00000509409 INCENPQ9NQS7 918 aa18.26■□□□□ 0.51
TPM3-219ENST00000509409 PRDM5Q9NQX1 630 aaPredicted RBP18.26■□□□□ 0.51
TPM3-219ENST00000509409 ATP2A1O14983 1001 aa18.25■□□□□ 0.51
TPM3-219ENST00000509409 PGK1P00558 417 aa18.25■□□□□ 0.51
TPM3-219ENST00000509409 AKR1A1P14550 325 aa18.25■□□□□ 0.51
TPM3-219ENST00000509409 SLC1A4P43007 532 aa18.25■□□□□ 0.51
TPM3-219ENST00000509409 PDE1AP54750 535 aa18.25■□□□□ 0.51
TPM3-219ENST00000509409 HDAC1Q13547 482 aaPredicted RBP18.25■□□□□ 0.51
TPM3-219ENST00000509409 CHURC1Q8WUH1 139 aa18.25■□□□□ 0.51
TPM3-219ENST00000509409 FBXO40Q9UH90 709 aa18.25■□□□□ 0.51
TPM3-219ENST00000509409 STX8Q9UNK0 236 aa18.25■□□□□ 0.51
TPM3-219ENST00000509409 A0A0G2JMZ2 1700 aa18.25■□□□□ 0.51
TPM3-219ENST00000509409 SALL3Q9BXA9 1300 aa18.24■□□□□ 0.51
TPM3-219ENST00000509409 ZNF236Q9UL36 1845 aa18.24■□□□□ 0.51
TPM3-219ENST00000509409 RANBP6O60518 1105 aaKnown RBP18.24■□□□□ 0.51
TPM3-219ENST00000509409 ZNF865P0CJ78 1059 aaPredicted RBP18.24■□□□□ 0.51
TPM3-219ENST00000509409 FDX1P10109 184 aa18.24■□□□□ 0.51
TPM3-219ENST00000509409 MCCP23508 829 aa18.24■□□□□ 0.51
TPM3-219ENST00000509409 TRIM60Q495X7 471 aa18.24■□□□□ 0.51
TPM3-219ENST00000509409 MSL3Q8N5Y2 521 aaKnown RBP18.24■□□□□ 0.51
TPM3-219ENST00000509409 CHST13Q8NET6 341 aa18.24■□□□□ 0.51
TPM3-219ENST00000509409 HELLSQ9NRZ9 838 aa18.24■□□□□ 0.51
TPM3-219ENST00000509409 TOMM22Q9NS69 142 aa18.24■□□□□ 0.51
TPM3-219ENST00000509409 HOMER2Q9NSB8 354 aa18.24■□□□□ 0.51
TPM3-219ENST00000509409 ZHX1Q9UKY1 873 aaPredicted RBP18.24■□□□□ 0.51
TPM3-219ENST00000509409 FAM184BQ9ULE4 1060 aa18.24■□□□□ 0.51
TPM3-219ENST00000509409 MTMR7Q9Y216 660 aa18.24■□□□□ 0.51
TPM3-219ENST00000509409 TRIM6-TRIM34B2RNG4 842 aa18.23■□□□□ 0.51
TPM3-219ENST00000509409 STAT2P52630 851 aa18.23■□□□□ 0.51
TPM3-219ENST00000509409 OAZ1P54368 228 aa18.23■□□□□ 0.51
TPM3-219ENST00000509409 VPS53Q5VIR6 699 aa18.23■□□□□ 0.51
TPM3-219ENST00000509409 FAM160B2Q86V87 743 aa18.23■□□□□ 0.51
TPM3-219ENST00000509409 DEFB123Q8N688 67 aa18.23■□□□□ 0.51
TPM3-219ENST00000509409 STAG1Q8WVM7 1258 aa18.23■□□□□ 0.51
TPM3-219ENST00000509409 SYNGAP1Q96PV0 1343 aa18.23■□□□□ 0.51
TPM3-219ENST00000509409 PLIN4Q96Q06 1357 aa18.22■□□□□ 0.51
TPM3-219ENST00000509409 SNAI1O95863 264 aaPredicted RBP18.22■□□□□ 0.51
TPM3-219ENST00000509409 MCMDC2Q4G0Z9 681 aa18.22■□□□□ 0.51
TPM3-219ENST00000509409 GPR153Q6NV75 609 aa18.22■□□□□ 0.51
TPM3-219ENST00000509409 RILPL2Q969X0 211 aa18.22■□□□□ 0.51
TPM3-219ENST00000509409 LENG1Q96BZ8 264 aaPredicted RBP18.22■□□□□ 0.51
TPM3-219ENST00000509409 GMCL1Q96IK5 515 aa18.22■□□□□ 0.51
TPM3-219ENST00000509409 LNPKQ9C0E8 428 aa18.22■□□□□ 0.51
TPM3-219ENST00000509409 RWDD1Q9H446 243 aaPredicted RBP18.22■□□□□ 0.51
TPM3-219ENST00000509409 PHF24Q9UPV7 400 aa18.22■□□□□ 0.51
TPM3-219ENST00000509409 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.22■□□□□ 0.51
TPM3-219ENST00000509409 DNAJC25-GNG10A0A024R161 153 aa18.21■□□□□ 0.51
TPM3-219ENST00000509409 FOXP2O15409 715 aa18.21■□□□□ 0.51
TPM3-219ENST00000509409 NMT2O60551 498 aa18.21■□□□□ 0.51
TPM3-219ENST00000509409 ALX1Q15699 326 aa18.21■□□□□ 0.51
TPM3-219ENST00000509409 RRP12Q5JTH9 1297 aaKnown RBP18.21■□□□□ 0.51
TPM3-219ENST00000509409 RCSD1Q6JBY9 416 aa18.21■□□□□ 0.51
TPM3-219ENST00000509409 B4GALNT3Q6L9W6 998 aa18.21■□□□□ 0.51
TPM3-219ENST00000509409 MAMDC4Q6UXC1 1216 aa18.21■□□□□ 0.51
TPM3-219ENST00000509409 KCTD1Q719H9 257 aa18.21■□□□□ 0.51
TPM3-219ENST00000509409 Q7L0L9 218 aa18.21■□□□□ 0.51
TPM3-219ENST00000509409 FAM227BQ96M60 508 aa18.21■□□□□ 0.51
TPM3-219ENST00000509409 DNAH12Q6ZR08 3092 aa18.2■□□□□ 0.5
TPM3-219ENST00000509409 POTEB2H3BUK9 544 aa18.2■□□□□ 0.5
TPM3-219ENST00000509409 TLE2Q04725 743 aa18.2■□□□□ 0.5
TPM3-219ENST00000509409 ACVR2BQ13705 512 aa18.2■□□□□ 0.5
TPM3-219ENST00000509409 SNX17Q15036 470 aa18.2■□□□□ 0.5
TPM3-219ENST00000509409 CCDC174Q6PII3 467 aa18.2■□□□□ 0.5
TPM3-219ENST00000509409 ZNF467Q7Z7K2 595 aaPredicted RBP18.2■□□□□ 0.5
TPM3-219ENST00000509409 BADQ92934 168 aa18.2■□□□□ 0.5
TPM3-219ENST00000509409 AGBL1Q96MI9 1066 aa18.2■□□□□ 0.5
TPM3-219ENST00000509409 ACAD9Q9H845 621 aa18.2■□□□□ 0.5
TPM3-219ENST00000509409 IL17RBQ9NRM6 502 aa18.2■□□□□ 0.5
TPM3-219ENST00000509409 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.2■□□□□ 0.5
TPM3-219ENST00000509409 ANAPC4Q9UJX5 808 aa18.2■□□□□ 0.5
TPM3-219ENST00000509409 ZNFX1Q9P2E3 1918 aaKnown RBP18.19■□□□□ 0.5
TPM3-219ENST00000509409 COL11A1P12107 1806 aaPredicted RBP18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms