RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 TSPY2A6NKD2 308 aa17.1■□□□□ 0.33
HMGCS1-203ENST00000507004 PLA2G6O60733 806 aa17.1■□□□□ 0.33
HMGCS1-203ENST00000507004 MCMDC2Q4G0Z9 681 aa17.1■□□□□ 0.33
HMGCS1-203ENST00000507004 ZNF467Q7Z7K2 595 aaPredicted RBP17.1■□□□□ 0.33
HMGCS1-203ENST00000507004 SMC5Q8IY18 1101 aa17.1■□□□□ 0.33
HMGCS1-203ENST00000507004 TRPV1Q8NER1 839 aa17.1■□□□□ 0.33
HMGCS1-203ENST00000507004 GMCL1Q96IK5 515 aa17.1■□□□□ 0.33
HMGCS1-203ENST00000507004 SENP6Q9GZR1 1112 aaPredicted RBP17.1■□□□□ 0.33
HMGCS1-203ENST00000507004 SLC38A10Q9HBR0 1119 aa17.1■□□□□ 0.33
HMGCS1-203ENST00000507004 PRKAG2Q9UGJ0 569 aa17.1■□□□□ 0.33
HMGCS1-203ENST00000507004 ZMYM6O95789 1325 aa17.1■□□□□ 0.33
HMGCS1-203ENST00000507004 ALPK3Q96L96 1907 aa17.09■□□□□ 0.33
HMGCS1-203ENST00000507004 ORC4O43929 436 aa17.09■□□□□ 0.33
HMGCS1-203ENST00000507004 RARBP10826 455 aa17.09■□□□□ 0.33
HMGCS1-203ENST00000507004 STAT2P52630 851 aa17.09■□□□□ 0.33
HMGCS1-203ENST00000507004 KIFC2Q96AC6 838 aa17.09■□□□□ 0.33
HMGCS1-203ENST00000507004 NUP88Q99567 741 aaPredicted RBP17.09■□□□□ 0.33
HMGCS1-203ENST00000507004 ZMYND8Q9ULU4 1186 aaPredicted RBP17.09■□□□□ 0.33
HMGCS1-203ENST00000507004 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.09■□□□□ 0.33
HMGCS1-203ENST00000507004 SYNGAP1Q96PV0 1343 aa17.09■□□□□ 0.33
HMGCS1-203ENST00000507004 MYH4Q9Y623 1939 aa17.09■□□□□ 0.33
HMGCS1-203ENST00000507004 ZNFX1Q9P2E3 1918 aaKnown RBP17.08■□□□□ 0.33
HMGCS1-203ENST00000507004 FRMPD3Q5JV73 1810 aa17.08■□□□□ 0.33
HMGCS1-203ENST00000507004 AKR1A1P14550 325 aa17.08■□□□□ 0.32
HMGCS1-203ENST00000507004 SLC1A4P43007 532 aa17.08■□□□□ 0.32
HMGCS1-203ENST00000507004 TKFCQ3LXA3 575 aa17.08■□□□□ 0.32
HMGCS1-203ENST00000507004 GPR153Q6NV75 609 aa17.08■□□□□ 0.32
HMGCS1-203ENST00000507004 RNF180Q86T96 592 aa17.08■□□□□ 0.32
HMGCS1-203ENST00000507004 LRRC47Q8N1G4 583 aaKnown RBP17.08■□□□□ 0.32
HMGCS1-203ENST00000507004 STAG1Q8WVM7 1258 aa17.08■□□□□ 0.32
HMGCS1-203ENST00000507004 STX8Q9UNK0 236 aa17.08■□□□□ 0.32
HMGCS1-203ENST00000507004 COL11A1P12107 1806 aaPredicted RBP17.07■□□□□ 0.32
HMGCS1-203ENST00000507004 FGRP09769 529 aa17.07■□□□□ 0.32
HMGCS1-203ENST00000507004 LRRC26Q2I0M4 334 aa17.07■□□□□ 0.32
HMGCS1-203ENST00000507004 FAM47AQ5JRC9 791 aa17.07■□□□□ 0.32
HMGCS1-203ENST00000507004 C1orf53Q5VUE5 145 aa17.07■□□□□ 0.32
HMGCS1-203ENST00000507004 RCSD1Q6JBY9 416 aa17.07■□□□□ 0.32
HMGCS1-203ENST00000507004 MAMDC4Q6UXC1 1216 aa17.07■□□□□ 0.32
HMGCS1-203ENST00000507004 CPXCR1Q8N123 301 aa17.07■□□□□ 0.32
HMGCS1-203ENST00000507004 LBHD1Q9BQE6 289 aaPredicted RBP17.07■□□□□ 0.32
HMGCS1-203ENST00000507004 OSBPL3Q9H4L5 887 aa17.07■□□□□ 0.32
HMGCS1-203ENST00000507004 PNMA2Q9UL42 364 aa17.07■□□□□ 0.32
HMGCS1-203ENST00000507004 DNAJC25-GNG10A0A024R161 153 aa17.06■□□□□ 0.32
HMGCS1-203ENST00000507004 TRIM6-TRIM34B2RNG4 842 aa17.06■□□□□ 0.32
HMGCS1-203ENST00000507004 HIP1O00291 1037 aa17.06■□□□□ 0.32
HMGCS1-203ENST00000507004 RANBP6O60518 1105 aaKnown RBP17.06■□□□□ 0.32
HMGCS1-203ENST00000507004 PGK2P07205 417 aa17.06■□□□□ 0.32
HMGCS1-203ENST00000507004 MAGEA10P43363 369 aaPredicted RBP17.06■□□□□ 0.32
HMGCS1-203ENST00000507004 IKQ13123 557 aaPredicted RBP17.06■□□□□ 0.32
HMGCS1-203ENST00000507004 ANKRD35Q8N283 1001 aa17.06■□□□□ 0.32
HMGCS1-203ENST00000507004 YTHDC1Q96MU7 727 aaKnown RBP17.06■□□□□ 0.32
HMGCS1-203ENST00000507004 LNPKQ9C0E8 428 aa17.06■□□□□ 0.32
HMGCS1-203ENST00000507004 RNF41Q9H4P4 317 aaPredicted RBP17.06■□□□□ 0.32
HMGCS1-203ENST00000507004 XPNPEP3Q9NQH7 507 aa17.06■□□□□ 0.32
HMGCS1-203ENST00000507004 ISY1Q9ULR0 285 aaKnown RBP17.06■□□□□ 0.32
HMGCS1-203ENST00000507004 TMEM232C9JQI7 657 aa17.05■□□□□ 0.32
HMGCS1-203ENST00000507004 SYN1P17600 705 aa17.05■□□□□ 0.32
HMGCS1-203ENST00000507004 NOVP48745 357 aa17.05■□□□□ 0.32
HMGCS1-203ENST00000507004 LRRC41Q15345 812 aa17.05■□□□□ 0.32
HMGCS1-203ENST00000507004 LRIT3Q3SXY7 679 aa17.05■□□□□ 0.32
HMGCS1-203ENST00000507004 GJC2Q5T442 439 aaPredicted RBP17.05■□□□□ 0.32
HMGCS1-203ENST00000507004 CCDC129Q6ZRS4 1044 aa17.05■□□□□ 0.32
HMGCS1-203ENST00000507004 CHD1LQ86WJ1 897 aa17.05■□□□□ 0.32
HMGCS1-203ENST00000507004 TDHQ8IZJ6 230 aa17.05■□□□□ 0.32
HMGCS1-203ENST00000507004 DCAF4Q8WV16 495 aa17.05■□□□□ 0.32
HMGCS1-203ENST00000507004 TSEN34Q9BSV6 310 aaKnown RBP17.05■□□□□ 0.32
HMGCS1-203ENST00000507004 UBE2OQ9C0C9 1292 aaKnown RBP17.05■□□□□ 0.32
HMGCS1-203ENST00000507004 ACAD9Q9H845 621 aa17.05■□□□□ 0.32
HMGCS1-203ENST00000507004 RAVER2Q9HCJ3 691 aaKnown RBP17.05■□□□□ 0.32
HMGCS1-203ENST00000507004 TCP11L1Q9NUJ3 509 aa17.05■□□□□ 0.32
HMGCS1-203ENST00000507004 FAM184BQ9ULE4 1060 aa17.05■□□□□ 0.32
HMGCS1-203ENST00000507004 CCDC171Q6TFL3 1326 aa17.04■□□□□ 0.32
HMGCS1-203ENST00000507004 FOXP2O15409 715 aa17.04■□□□□ 0.32
HMGCS1-203ENST00000507004 FGAP02671 866 aa17.04■□□□□ 0.32
HMGCS1-203ENST00000507004 RTP1P59025 263 aa17.04■□□□□ 0.32
HMGCS1-203ENST00000507004 CTDSPL2Q05D32 466 aa17.04■□□□□ 0.32
HMGCS1-203ENST00000507004 SNX17Q15036 470 aa17.04■□□□□ 0.32
HMGCS1-203ENST00000507004 PRAMEF19Q5SWL8 479 aa17.04■□□□□ 0.32
HMGCS1-203ENST00000507004 SLC39A5Q6ZMH5 540 aa17.04■□□□□ 0.32
HMGCS1-203ENST00000507004 TTC14Q96N46 770 aa17.04■□□□□ 0.32
HMGCS1-203ENST00000507004 ABHD16BQ9H3Z7 469 aa17.04■□□□□ 0.32
HMGCS1-203ENST00000507004 SPC25Q9HBM1 224 aa17.04■□□□□ 0.32
HMGCS1-203ENST00000507004 PHF24Q9UPV7 400 aa17.04■□□□□ 0.32
HMGCS1-203ENST00000507004 RIPK3Q9Y572 518 aa17.04■□□□□ 0.32
HMGCS1-203ENST00000507004 PLXNA1Q9UIW2 1896 aa17.03■□□□□ 0.32
HMGCS1-203ENST00000507004 ZNF865P0CJ78 1059 aaPredicted RBP17.03■□□□□ 0.32
HMGCS1-203ENST00000507004 HSPD1P10809 573 aaKnown RBP17.03■□□□□ 0.32
HMGCS1-203ENST00000507004 TOP1P11387 765 aaKnown RBP17.03■□□□□ 0.32
HMGCS1-203ENST00000507004 MCCP23508 829 aa17.03■□□□□ 0.32
HMGCS1-203ENST00000507004 NUCB1Q02818 461 aa17.03■□□□□ 0.32
HMGCS1-203ENST00000507004 CCDC178Q5BJE1 867 aa17.03■□□□□ 0.32
HMGCS1-203ENST00000507004 VPS53Q5VIR6 699 aa17.03■□□□□ 0.32
HMGCS1-203ENST00000507004 RILPL2Q969X0 211 aa17.03■□□□□ 0.32
HMGCS1-203ENST00000507004 TOMM22Q9NS69 142 aa17.03■□□□□ 0.32
HMGCS1-203ENST00000507004 A0A0D9SFI3 127 aa17.02■□□□□ 0.32
HMGCS1-203ENST00000507004 MOXD2PA6NHM9 499 aa17.02■□□□□ 0.32
HMGCS1-203ENST00000507004 DUSP11O75319 330 aaKnown RBP17.02■□□□□ 0.32
HMGCS1-203ENST00000507004 MYCNP04198 464 aaPredicted RBP17.02■□□□□ 0.32
HMGCS1-203ENST00000507004 SLC4A3P48751 1232 aa17.02■□□□□ 0.32
HMGCS1-203ENST00000507004 ATN1P54259 1190 aaPredicted RBP17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms