RNA–Protein interactions for RNA: ENST00000505589.1

NEDD9-210, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 571 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-210ENST00000505589 ZNF287Q9HBT7 754 aa11.91□□□□□ -0.5
NEDD9-210ENST00000505589 SPTBN5Q9NRC6 3674 aaKnown RBP11.91□□□□□ -0.5
NEDD9-210ENST00000505589 CDK5RAP2Q96SN8 1893 aa11.91□□□□□ -0.5
NEDD9-210ENST00000505589 RAD21O60216 631 aa11.9□□□□□ -0.5
NEDD9-210ENST00000505589 ZEB2O60315 1214 aa11.9□□□□□ -0.5
NEDD9-210ENST00000505589 FGBP02675 491 aa11.9□□□□□ -0.5
NEDD9-210ENST00000505589 PGK2P07205 417 aa11.9□□□□□ -0.5
NEDD9-210ENST00000505589 C6orf222P0C671 652 aaPredicted RBP11.9□□□□□ -0.5
NEDD9-210ENST00000505589 EEF2P13639 858 aaKnown RBP11.9□□□□□ -0.5
NEDD9-210ENST00000505589 CDK7P50613 346 aa11.9□□□□□ -0.5
NEDD9-210ENST00000505589 EPHB4P54760 987 aa11.9□□□□□ -0.5
NEDD9-210ENST00000505589 ACVR2BQ13705 512 aa11.9□□□□□ -0.5
NEDD9-210ENST00000505589 GNASQ5JWF2 1037 aa11.9□□□□□ -0.5
NEDD9-210ENST00000505589 TMEM240Q5SV17 173 aa11.9□□□□□ -0.5
NEDD9-210ENST00000505589 C12orf60Q5U649 245 aa11.9□□□□□ -0.5
NEDD9-210ENST00000505589 ITPRIPQ8IWB1 547 aa11.9□□□□□ -0.5
NEDD9-210ENST00000505589 ANKRD35Q8N283 1001 aa11.9□□□□□ -0.5
NEDD9-210ENST00000505589 KIF1BPQ96EK5 621 aa11.9□□□□□ -0.5
NEDD9-210ENST00000505589 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.9□□□□□ -0.55e-33■■□□□ 12.3
NEDD9-210ENST00000505589 CHMP4BQ9H444 224 aaKnown RBP11.9□□□□□ -0.5
NEDD9-210ENST00000505589 TLR7Q9NYK1 1049 aaKnown RBP11.9□□□□□ -0.5
NEDD9-210ENST00000505589 TBX21Q9UL17 535 aa11.9□□□□□ -0.5
NEDD9-210ENST00000505589 APBB1O00213 710 aa11.89□□□□□ -0.51
NEDD9-210ENST00000505589 ATP2A1O14983 1001 aa11.89□□□□□ -0.51
NEDD9-210ENST00000505589 HMMRO75330 724 aa11.89□□□□□ -0.51
NEDD9-210ENST00000505589 ASGR1P07306 291 aa11.89□□□□□ -0.51
NEDD9-210ENST00000505589 AKR1B1P15121 316 aa11.89□□□□□ -0.51
NEDD9-210ENST00000505589 GJA9P57773 515 aa11.89□□□□□ -0.51
NEDD9-210ENST00000505589 C16orf86Q6ZW13 317 aa11.89□□□□□ -0.51
NEDD9-210ENST00000505589 SIAH1Q8IUQ4 282 aa11.89□□□□□ -0.51
NEDD9-210ENST00000505589 CHST13Q8NET6 341 aa11.89□□□□□ -0.51
NEDD9-210ENST00000505589 RHPN1Q8TCX5 695 aa11.89□□□□□ -0.51
NEDD9-210ENST00000505589 PPM1EQ8WY54 764 aa11.89□□□□□ -0.51
NEDD9-210ENST00000505589 FAM122AQ96E09 287 aa11.89□□□□□ -0.51
NEDD9-210ENST00000505589 SLF1Q9BQI6 1058 aa11.89□□□□□ -0.51
NEDD9-210ENST00000505589 PBX4Q9BYU1 374 aa11.89□□□□□ -0.51
NEDD9-210ENST00000505589 MKNK2Q9HBH9 465 aa11.89□□□□□ -0.51
NEDD9-210ENST00000505589 ZHX1Q9UKY1 873 aaPredicted RBP11.89□□□□□ -0.51
NEDD9-210ENST00000505589 ZNF214Q9UL59 606 aaPredicted RBP11.89□□□□□ -0.51
NEDD9-210ENST00000505589 ARIH1Q9Y4X5 557 aaPredicted RBP11.89□□□□□ -0.51
NEDD9-210ENST00000505589 SMCHD1A6NHR9 2005 aa11.89□□□□□ -0.51
NEDD9-210ENST00000505589 PRUNE2Q8WUY3 3088 aa11.88□□□□□ -0.51
NEDD9-210ENST00000505589 USP17L12C9JPN9 530 aa11.88□□□□□ -0.51
NEDD9-210ENST00000505589 USP17L21D6R901 530 aa11.88□□□□□ -0.51
NEDD9-210ENST00000505589 CCER2I3L3R5 266 aa11.88□□□□□ -0.51
NEDD9-210ENST00000505589 GOLIM4O00461 696 aa11.88□□□□□ -0.51
NEDD9-210ENST00000505589 RAB11FIP3O75154 756 aa11.88□□□□□ -0.51
NEDD9-210ENST00000505589 IGFBP4P22692 258 aa11.88□□□□□ -0.51
NEDD9-210ENST00000505589 UBE3CQ15386 1083 aa11.88□□□□□ -0.51
NEDD9-210ENST00000505589 KIAA1755Q5JYT7 1200 aa11.88□□□□□ -0.51
NEDD9-210ENST00000505589 RASIP1Q5U651 963 aa11.88□□□□□ -0.51
NEDD9-210ENST00000505589 CCSAPQ6IQ19 270 aaPredicted RBP11.88□□□□□ -0.51
NEDD9-210ENST00000505589 RPAP2Q8IXW5 612 aaPredicted RBP11.88□□□□□ -0.51
NEDD9-210ENST00000505589 HERVK_113Q902F9 699 aa11.88□□□□□ -0.51
NEDD9-210ENST00000505589 DYNLL2Q96FJ2 89 aa11.88□□□□□ -0.51
NEDD9-210ENST00000505589 UHRF1Q96T88 793 aaPredicted RBP11.88□□□□□ -0.51
NEDD9-210ENST00000505589 IL23AQ9NPF7 189 aa11.88□□□□□ -0.51
NEDD9-210ENST00000505589 SYNPO2Q9UMS6 1093 aa11.88□□□□□ -0.51
NEDD9-210ENST00000505589 MUC3AQ02505 3323 aa11.88□□□□□ -0.51
NEDD9-210ENST00000505589 ZNFX1Q9P2E3 1918 aaKnown RBP11.88□□□□□ -0.51
NEDD9-210ENST00000505589 SYNRGQ9UMZ2 1314 aa11.87□□□□□ -0.51
NEDD9-210ENST00000505589 TCRBV5S4A2TA0A5A2 114 aa11.87□□□□□ -0.51
NEDD9-210ENST00000505589 SNAI1O95863 264 aaPredicted RBP11.87□□□□□ -0.51
NEDD9-210ENST00000505589 CSF2RAP15509 400 aa11.87□□□□□ -0.51
NEDD9-210ENST00000505589 TAL1P17542 331 aaPredicted RBP11.87□□□□□ -0.51
NEDD9-210ENST00000505589 ADD2P35612 726 aa11.87□□□□□ -0.51
NEDD9-210ENST00000505589 OAZ1P54368 228 aa11.87□□□□□ -0.51
NEDD9-210ENST00000505589 FAM83BQ5T0W9 1011 aa11.87□□□□□ -0.51
NEDD9-210ENST00000505589 SNRNP48Q6IEG0 339 aaKnown RBP11.87□□□□□ -0.51
NEDD9-210ENST00000505589 ZNF365Q70YC5 407 aa11.87□□□□□ -0.51
NEDD9-210ENST00000505589 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.87□□□□□ -0.51
NEDD9-210ENST00000505589 LCORLQ8N3X6 602 aa11.87□□□□□ -0.51
NEDD9-210ENST00000505589 ADAMTS19Q8TE59 1207 aa11.87□□□□□ -0.51
NEDD9-210ENST00000505589 DNAJC2Q99543 621 aaKnown RBP11.87□□□□□ -0.51
NEDD9-210ENST00000505589 ARMT1Q9H993 441 aa11.87□□□□□ -0.51
NEDD9-210ENST00000505589 PAG1Q9NWQ8 432 aa11.87□□□□□ -0.51
NEDD9-210ENST00000505589 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.87□□□□□ -0.51
NEDD9-210ENST00000505589 NYAP2Q9P242 653 aa11.87□□□□□ -0.51
NEDD9-210ENST00000505589 ARPP21Q9UBL0 812 aaPredicted RBP11.87□□□□□ -0.51
NEDD9-210ENST00000505589 FEM1BQ9UK73 627 aa11.87□□□□□ -0.51
NEDD9-210ENST00000505589 EXOC6BQ9Y2D4 811 aa11.87□□□□□ -0.51
NEDD9-210ENST00000505589 DNAJC25-GNG10A0A024R161 153 aa11.86□□□□□ -0.51
NEDD9-210ENST00000505589 ASB14A6NK59 587 aa11.86□□□□□ -0.51
NEDD9-210ENST00000505589 F5H6K3 240 aa11.86□□□□□ -0.51
NEDD9-210ENST00000505589 NKX3-2P78367 333 aa11.86□□□□□ -0.51
NEDD9-210ENST00000505589 KLRC3Q07444 240 aa11.86□□□□□ -0.51
NEDD9-210ENST00000505589 CCDC144BQ3MJ40 725 aa11.86□□□□□ -0.51
NEDD9-210ENST00000505589 PPP4R3BQ5MIZ7 849 aa11.86□□□□□ -0.51
NEDD9-210ENST00000505589 CEP85Q6P2H3 762 aa11.86□□□□□ -0.51
NEDD9-210ENST00000505589 GIMAP6Q6P9H5 292 aa11.86□□□□□ -0.51
NEDD9-210ENST00000505589 ZNF444Q8N0Y2 327 aaPredicted RBP11.86□□□□□ -0.51
NEDD9-210ENST00000505589 REPS2Q8NFH8 660 aa11.86□□□□□ -0.51
NEDD9-210ENST00000505589 AP5M1Q9H0R1 490 aa11.86□□□□□ -0.51
NEDD9-210ENST00000505589 UPF3AQ9H1J1 476 aaKnown RBP11.86□□□□□ -0.51
NEDD9-210ENST00000505589 PRDM12Q9H4Q4 367 aa11.86□□□□□ -0.51
NEDD9-210ENST00000505589 C1orf115Q9H7X2 142 aa11.86□□□□□ -0.51
NEDD9-210ENST00000505589 FBXO28Q9NVF7 368 aa11.86□□□□□ -0.51
NEDD9-210ENST00000505589 CXXC1Q9P0U4 656 aaPredicted RBP11.86□□□□□ -0.51
NEDD9-210ENST00000505589 Q9Y3F1 56 aa11.86□□□□□ -0.51
NEDD9-210ENST00000505589 SLC4A4Q9Y6R1 1079 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms