RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 DNAJB2P25686 324 aa17.66■□□□□ 0.42
TRAF4-212ENST00000498540 IRX5P78411 483 aaPredicted RBP17.66■□□□□ 0.42
TRAF4-212ENST00000498540 UBE3CQ15386 1083 aa17.66■□□□□ 0.42
TRAF4-212ENST00000498540 SNRNP48Q6IEG0 339 aaKnown RBP17.66■□□□□ 0.42
TRAF4-212ENST00000498540 CCSAPQ6IQ19 270 aaPredicted RBP17.66■□□□□ 0.42
TRAF4-212ENST00000498540 RPAP2Q8IXW5 612 aaPredicted RBP17.66■□□□□ 0.42
TRAF4-212ENST00000498540 USP38Q8NB14 1042 aa17.66■□□□□ 0.42
TRAF4-212ENST00000498540 KLHDC9Q8NEP7 349 aa17.66■□□□□ 0.42
TRAF4-212ENST00000498540 DDRGK1Q96HY6 314 aa17.66■□□□□ 0.42
TRAF4-212ENST00000498540 TOX2Q96NM4 488 aa17.66■□□□□ 0.42
TRAF4-212ENST00000498540 SLF1Q9BQI6 1058 aa17.66■□□□□ 0.42
TRAF4-212ENST00000498540 TEX13BQ9BXU2 312 aa17.66■□□□□ 0.42
TRAF4-212ENST00000498540 PUS7LQ9H0K6 701 aaKnown RBP17.66■□□□□ 0.42
TRAF4-212ENST00000498540 RIPK3Q9Y572 518 aa17.66■□□□□ 0.42
TRAF4-212ENST00000498540 MYH4Q9Y623 1939 aa17.66■□□□□ 0.42
TRAF4-212ENST00000498540 SYNGAP1Q96PV0 1343 aa17.66■□□□□ 0.42
TRAF4-212ENST00000498540 DCDC2CA8MYV0 355 aa17.65■□□□□ 0.42
TRAF4-212ENST00000498540 ADCY6O43306 1168 aa17.65■□□□□ 0.42
TRAF4-212ENST00000498540 HMMRO75330 724 aa17.65■□□□□ 0.42
TRAF4-212ENST00000498540 KCNA10Q16322 511 aa17.65■□□□□ 0.42
TRAF4-212ENST00000498540 MSL3Q8N5Y2 521 aaKnown RBP17.65■□□□□ 0.42
TRAF4-212ENST00000498540 NUP133Q8WUM0 1156 aa17.65■□□□□ 0.42
TRAF4-212ENST00000498540 ZHX1Q9UKY1 873 aaPredicted RBP17.65■□□□□ 0.42
TRAF4-212ENST00000498540 TBX21Q9UL17 535 aa17.65■□□□□ 0.42
TRAF4-212ENST00000498540 FAM184BQ9ULE4 1060 aa17.65■□□□□ 0.42
TRAF4-212ENST00000498540 DNAJC25-GNG10A0A024R161 153 aa17.64■□□□□ 0.41
TRAF4-212ENST00000498540 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.64■□□□□ 0.41
TRAF4-212ENST00000498540 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.64■□□□□ 0.41
TRAF4-212ENST00000498540 MOXD2PA6NHM9 499 aa17.64■□□□□ 0.41
TRAF4-212ENST00000498540 RAB11FIP3O75154 756 aa17.64■□□□□ 0.41
TRAF4-212ENST00000498540 TIMP1P01033 207 aa17.64■□□□□ 0.41
TRAF4-212ENST00000498540 RASA1P20936 1047 aa17.64■□□□□ 0.41
TRAF4-212ENST00000498540 MAMDC4Q6UXC1 1216 aa17.64■□□□□ 0.41
TRAF4-212ENST00000498540 STK11IPQ8N1F8 1099 aa17.64■□□□□ 0.41
TRAF4-212ENST00000498540 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.64■□□□□ 0.414e-10■■■□□ 18.2
TRAF4-212ENST00000498540 PRDM6Q9NQX0 595 aa17.64■□□□□ 0.41
TRAF4-212ENST00000498540 ARPP21Q9UBL0 812 aaPredicted RBP17.64■□□□□ 0.41
TRAF4-212ENST00000498540 NDUFB10O96000 172 aa17.63■□□□□ 0.41
TRAF4-212ENST00000498540 SLC4A3P48751 1232 aa17.63■□□□□ 0.41
TRAF4-212ENST00000498540 DDX11Q96FC9 970 aa17.63■□□□□ 0.41
TRAF4-212ENST00000498540 ZNF576Q9H609 170 aa17.63■□□□□ 0.41
TRAF4-212ENST00000498540 ZBTB40Q9NUA8 1239 aa17.63■□□□□ 0.41
TRAF4-212ENST00000498540 F5H6K3 240 aa17.62■□□□□ 0.41
TRAF4-212ENST00000498540 DUSP11O75319 330 aaKnown RBP17.62■□□□□ 0.41
TRAF4-212ENST00000498540 C6orf222P0C671 652 aaPredicted RBP17.62■□□□□ 0.41
TRAF4-212ENST00000498540 CST5P28325 142 aaPredicted RBP17.62■□□□□ 0.41
TRAF4-212ENST00000498540 KLRC3Q07444 240 aa17.62■□□□□ 0.41
TRAF4-212ENST00000498540 C16orf59Q7L2K0 433 aa17.62■□□□□ 0.41
TRAF4-212ENST00000498540 CPXCR1Q8N123 301 aa17.62■□□□□ 0.41
TRAF4-212ENST00000498540 TIFAQ96CG3 184 aa17.62■□□□□ 0.41
TRAF4-212ENST00000498540 FGD4Q96M96 766 aa17.62■□□□□ 0.41
TRAF4-212ENST00000498540 NYAP2Q9P242 653 aa17.62■□□□□ 0.41
TRAF4-212ENST00000498540 COG6Q9Y2V7 657 aa17.62■□□□□ 0.41
TRAF4-212ENST00000498540 ATP2A1O14983 1001 aa17.61■□□□□ 0.41
TRAF4-212ENST00000498540 ASGR1P07306 291 aa17.61■□□□□ 0.41
TRAF4-212ENST00000498540 PBX2P40425 430 aa17.61■□□□□ 0.41
TRAF4-212ENST00000498540 CDK7P50613 346 aa17.61■□□□□ 0.41
TRAF4-212ENST00000498540 ACVR2BQ13705 512 aa17.61■□□□□ 0.41
TRAF4-212ENST00000498540 MFSD5Q6N075 450 aa17.61■□□□□ 0.41
TRAF4-212ENST00000498540 ZNF467Q7Z7K2 595 aaPredicted RBP17.61■□□□□ 0.41
TRAF4-212ENST00000498540 PRPF38AQ8NAV1 312 aaKnown RBP17.61■□□□□ 0.41
TRAF4-212ENST00000498540 SYMPKQ92797 1274 aaKnown RBP17.61■□□□□ 0.41
TRAF4-212ENST00000498540 GLT1D1Q96MS3 346 aa17.61■□□□□ 0.41
TRAF4-212ENST00000498540 STRBPQ96SI9 672 aaKnown RBP17.61■□□□□ 0.41
TRAF4-212ENST00000498540 RAVER2Q9HCJ3 691 aaKnown RBP17.61■□□□□ 0.41
TRAF4-212ENST00000498540 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.61■□□□□ 0.41
TRAF4-212ENST00000498540 DDX19BQ9UMR2 479 aa17.61■□□□□ 0.41
TRAF4-212ENST00000498540 ELP1O95163 1332 aa17.61■□□□□ 0.41
TRAF4-212ENST00000498540 CHD9Q3L8U1 2897 aa17.6■□□□□ 0.41
TRAF4-212ENST00000498540 GSG1L2A8MUP6 293 aa17.6■□□□□ 0.41
TRAF4-212ENST00000498540 GRXCR1A8MXD5 290 aa17.6■□□□□ 0.41
TRAF4-212ENST00000498540 CCDC144BQ3MJ40 725 aa17.6■□□□□ 0.41
TRAF4-212ENST00000498540 SBK1Q52WX2 424 aa17.6■□□□□ 0.41
TRAF4-212ENST00000498540 TMEM240Q5SV17 173 aa17.6■□□□□ 0.41
TRAF4-212ENST00000498540 ZSCAN25Q6NSZ9 544 aa17.6■□□□□ 0.41
TRAF4-212ENST00000498540 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.6■□□□□ 0.41
TRAF4-212ENST00000498540 KIFC2Q96AC6 838 aa17.6■□□□□ 0.41
TRAF4-212ENST00000498540 UPF3AQ9H1J1 476 aaKnown RBP17.6■□□□□ 0.41
TRAF4-212ENST00000498540 MKNK2Q9HBH9 465 aa17.6■□□□□ 0.41
TRAF4-212ENST00000498540 MROH7Q68CQ1 1323 aa17.6■□□□□ 0.41
TRAF4-212ENST00000498540 GBF1Q92538 1859 aa17.6■□□□□ 0.41
TRAF4-212ENST00000498540 LRRC37A2A6NM11 1700 aa17.59■□□□□ 0.41
TRAF4-212ENST00000498540 IGKV6D-41A0A0C4DH26 115 aa17.59■□□□□ 0.41
TRAF4-212ENST00000498540 MINDY4BA8MYZ0 360 aa17.59■□□□□ 0.41
TRAF4-212ENST00000498540 ZBED4O75132 1171 aa17.59■□□□□ 0.41
TRAF4-212ENST00000498540 MS4A1P11836 297 aa17.59■□□□□ 0.41
TRAF4-212ENST00000498540 CSF2RAP15509 400 aa17.59■□□□□ 0.41
TRAF4-212ENST00000498540 GJA9P57773 515 aa17.59■□□□□ 0.41
TRAF4-212ENST00000498540 PPIGQ13427 754 aaKnown RBP eCLIP17.59■□□□□ 0.411e-9■■■□□ 14.9
TRAF4-212ENST00000498540 TJAP1Q5JTD0 557 aa17.59■□□□□ 0.41
TRAF4-212ENST00000498540 RASIP1Q5U651 963 aa17.59■□□□□ 0.41
TRAF4-212ENST00000498540 ARMCX2Q7L311 632 aa17.59■□□□□ 0.41
TRAF4-212ENST00000498540 PCSK9Q8NBP7 692 aaKnown RBP17.59■□□□□ 0.41
TRAF4-212ENST00000498540 PBX4Q9BYU1 374 aa17.59■□□□□ 0.41
TRAF4-212ENST00000498540 PPP1R12CQ9BZL4 782 aa17.59■□□□□ 0.41
TRAF4-212ENST00000498540 ABHD16BQ9H3Z7 469 aa17.59■□□□□ 0.41
TRAF4-212ENST00000498540 SLC38A10Q9HBR0 1119 aa17.59■□□□□ 0.41
TRAF4-212ENST00000498540 CLIP2Q9UDT6 1046 aa17.59■□□□□ 0.41
TRAF4-212ENST00000498540 MUC3AQ02505 3323 aa17.59■□□□□ 0.41
TRAF4-212ENST00000498540 A0A0U1RQG5 324 aaPredicted RBP17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms