RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 CLEC10AQ8IUN9 316 aa17.22■□□□□ 0.35
PRPF40A-211ENST00000493468 TMEM57Q8N5G2 664 aa17.22■□□□□ 0.35
PRPF40A-211ENST00000493468 IL27Q8NEV9 243 aa17.22■□□□□ 0.35
PRPF40A-211ENST00000493468 CLUAP1Q96AJ1 413 aa17.22■□□□□ 0.35
PRPF40A-211ENST00000493468 MSRAQ9UJ68 235 aa17.22■□□□□ 0.35
PRPF40A-211ENST00000493468 XIRP2A4UGR9 3374 aa17.21■□□□□ 0.35
PRPF40A-211ENST00000493468 A0A0U1RQG5 324 aaPredicted RBP17.21■□□□□ 0.35
PRPF40A-211ENST00000493468 SNAI1O95863 264 aaPredicted RBP17.21■□□□□ 0.35
PRPF40A-211ENST00000493468 SLC9C2Q5TAH2 1124 aa17.21■□□□□ 0.35
PRPF40A-211ENST00000493468 ZNF365Q70YC5 407 aa17.21■□□□□ 0.35
PRPF40A-211ENST00000493468 FAM126BQ8IXS8 530 aa17.21■□□□□ 0.35
PRPF40A-211ENST00000493468 SDR42E1Q8WUS8 393 aa17.21■□□□□ 0.35
PRPF40A-211ENST00000493468 HERVK_113Q902F9 699 aa17.21■□□□□ 0.35
PRPF40A-211ENST00000493468 FRAT1Q92837 279 aaPredicted RBP17.21■□□□□ 0.35
PRPF40A-211ENST00000493468 C1QTNF1Q9BXJ1 281 aa17.21■□□□□ 0.35
PRPF40A-211ENST00000493468 UPF3AQ9H1J1 476 aaKnown RBP17.21■□□□□ 0.35
PRPF40A-211ENST00000493468 MTIF3Q9H2K0 278 aaKnown RBP17.21■□□□□ 0.35
PRPF40A-211ENST00000493468 FBXO28Q9NVF7 368 aa17.21■□□□□ 0.35
PRPF40A-211ENST00000493468 CXXC1Q9P0U4 656 aaPredicted RBP17.21■□□□□ 0.35
PRPF40A-211ENST00000493468 ARIH1Q9Y4X5 557 aaPredicted RBP17.21■□□□□ 0.35
PRPF40A-211ENST00000493468 TRANK1O15050 2925 aa17.2■□□□□ 0.34
PRPF40A-211ENST00000493468 TCF20Q9UGU0 1960 aaKnown RBP17.2■□□□□ 0.34
PRPF40A-211ENST00000493468 DNAJC25-GNG10A0A024R161 153 aa17.2■□□□□ 0.34
PRPF40A-211ENST00000493468 TCRBV5S4A2TA0A5A2 114 aa17.2■□□□□ 0.34
PRPF40A-211ENST00000493468 MYADML2A6NDP7 307 aa17.2■□□□□ 0.34
PRPF40A-211ENST00000493468 ARVCFO00192 962 aa17.2■□□□□ 0.34
PRPF40A-211ENST00000493468 TLR3O15455 904 aaKnown RBP17.2■□□□□ 0.34
PRPF40A-211ENST00000493468 ASGR1P07306 291 aa17.2■□□□□ 0.34
PRPF40A-211ENST00000493468 CYP2D6P10635 497 aa17.2■□□□□ 0.34
PRPF40A-211ENST00000493468 HOXD11P31277 338 aaPredicted RBP17.2■□□□□ 0.34
PRPF40A-211ENST00000493468 SAMD1Q6SPF0 538 aaPredicted RBP17.2■□□□□ 0.34
PRPF40A-211ENST00000493468 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.2■□□□□ 0.34
PRPF40A-211ENST00000493468 LCORLQ8N3X6 602 aa17.2■□□□□ 0.34
PRPF40A-211ENST00000493468 DYNLL2Q96FJ2 89 aa17.2■□□□□ 0.34
PRPF40A-211ENST00000493468 TEX13BQ9BXU2 312 aa17.2■□□□□ 0.34
PRPF40A-211ENST00000493468 TSPYL2Q9H2G4 693 aaPredicted RBP17.2■□□□□ 0.34
PRPF40A-211ENST00000493468 GOPCQ9HD26 462 aa17.2■□□□□ 0.34
PRPF40A-211ENST00000493468 IL23AQ9NPF7 189 aa17.2■□□□□ 0.34
PRPF40A-211ENST00000493468 ATP8A2Q9NTI2 1148 aa17.2■□□□□ 0.34
PRPF40A-211ENST00000493468 ZNF532Q9HCE3 1301 aa17.2■□□□□ 0.34
PRPF40A-211ENST00000493468 MYH7P12883 1935 aa17.19■□□□□ 0.34
PRPF40A-211ENST00000493468 C6orf222P0C671 652 aaPredicted RBP17.19■□□□□ 0.34
PRPF40A-211ENST00000493468 GJA9P57773 515 aa17.19■□□□□ 0.34
PRPF40A-211ENST00000493468 NKX3-2P78367 333 aa17.19■□□□□ 0.34
PRPF40A-211ENST00000493468 ERC1Q8IUD2 1116 aa17.19■□□□□ 0.34
PRPF40A-211ENST00000493468 KANSL2Q9H9L4 492 aa17.19■□□□□ 0.34
PRPF40A-211ENST00000493468 SPC25Q9HBM1 224 aa17.19■□□□□ 0.34
PRPF40A-211ENST00000493468 ZHX1Q9UKY1 873 aaPredicted RBP17.19■□□□□ 0.34
PRPF40A-211ENST00000493468 CD4P01730 458 aa17.18■□□□□ 0.34
PRPF40A-211ENST00000493468 EEF2P13639 858 aaKnown RBP17.18■□□□□ 0.34
PRPF40A-211ENST00000493468 IGFBP4P22692 258 aa17.18■□□□□ 0.34
PRPF40A-211ENST00000493468 CCDC85BQ15834 202 aaPredicted RBP17.18■□□□□ 0.34
PRPF40A-211ENST00000493468 C16orf86Q6ZW13 317 aa17.18■□□□□ 0.34
PRPF40A-211ENST00000493468 AACSQ86V21 672 aa17.18■□□□□ 0.34
PRPF40A-211ENST00000493468 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.18■□□□□ 0.34
PRPF40A-211ENST00000493468 SLC28A3Q9HAS3 691 aa17.18■□□□□ 0.34
PRPF40A-211ENST00000493468 ATP2A1O14983 1001 aa17.17■□□□□ 0.34
PRPF40A-211ENST00000493468 ACRP10323 421 aa17.17■□□□□ 0.34
PRPF40A-211ENST00000493468 CDK8P49336 464 aa17.17■□□□□ 0.34
PRPF40A-211ENST00000493468 ACVR2BQ13705 512 aa17.17■□□□□ 0.34
PRPF40A-211ENST00000493468 AAK1Q2M2I8 961 aa17.17■□□□□ 0.34
PRPF40A-211ENST00000493468 FAM83BQ5T0W9 1011 aa17.17■□□□□ 0.34
PRPF40A-211ENST00000493468 C12orf60Q5U649 245 aa17.17■□□□□ 0.34
PRPF40A-211ENST00000493468 ZKSCAN2Q63HK3 967 aa17.17■□□□□ 0.34
PRPF40A-211ENST00000493468 DDX11Q96FC9 970 aa17.17■□□□□ 0.34
PRPF40A-211ENST00000493468 PPP1R12CQ9BZL4 782 aa17.17■□□□□ 0.34
PRPF40A-211ENST00000493468 NKX2-4Q9H2Z4 354 aa17.17■□□□□ 0.34
PRPF40A-211ENST00000493468 ABHD16BQ9H3Z7 469 aa17.17■□□□□ 0.34
PRPF40A-211ENST00000493468 C1orf115Q9H7X2 142 aa17.17■□□□□ 0.34
PRPF40A-211ENST00000493468 APBB1O00213 710 aa17.16■□□□□ 0.34
PRPF40A-211ENST00000493468 ADCY6O43306 1168 aa17.16■□□□□ 0.34
PRPF40A-211ENST00000493468 BMP1P13497 986 aa17.16■□□□□ 0.34
PRPF40A-211ENST00000493468 SNRNP48Q6IEG0 339 aaKnown RBP17.16■□□□□ 0.34
PRPF40A-211ENST00000493468 AMOTL1Q8IY63 956 aa17.16■□□□□ 0.34
PRPF40A-211ENST00000493468 SLC43A3Q8NBI5 491 aa17.16■□□□□ 0.34
PRPF40A-211ENST00000493468 SLF1Q9BQI6 1058 aa17.16■□□□□ 0.34
PRPF40A-211ENST00000493468 SEZ6LQ9BYH1 1024 aa17.16■□□□□ 0.34
PRPF40A-211ENST00000493468 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.16■□□□□ 0.34
PRPF40A-211ENST00000493468 YBX2Q9Y2T7 364 aaKnown RBP17.16■□□□□ 0.34
PRPF40A-211ENST00000493468 LRRC37A2A6NM11 1700 aa17.16■□□□□ 0.34
PRPF40A-211ENST00000493468 MYH4Q9Y623 1939 aa17.15■□□□□ 0.34
PRPF40A-211ENST00000493468 CTAGE5O15320 804 aa17.15■□□□□ 0.34
PRPF40A-211ENST00000493468 FGBP02675 491 aa17.15■□□□□ 0.34
PRPF40A-211ENST00000493468 CYP2C18P33260 490 aa17.15■□□□□ 0.34
PRPF40A-211ENST00000493468 CCDC144BQ3MJ40 725 aa17.15■□□□□ 0.34
PRPF40A-211ENST00000493468 GNASQ5JWF2 1037 aa17.15■□□□□ 0.34
PRPF40A-211ENST00000493468 VTI1AQ96AJ9 217 aa17.15■□□□□ 0.34
PRPF40A-211ENST00000493468 ARMT1Q9H993 441 aa17.15■□□□□ 0.34
PRPF40A-211ENST00000493468 ZBED9Q6R2W3 1325 aa17.15■□□□□ 0.34
PRPF40A-211ENST00000493468 CABYRO75952 493 aa17.14■□□□□ 0.33
PRPF40A-211ENST00000493468 IRX5P78411 483 aaPredicted RBP17.14■□□□□ 0.33
PRPF40A-211ENST00000493468 FGD4Q96M96 766 aa17.14■□□□□ 0.33
PRPF40A-211ENST00000493468 HIPK3Q9H422 1215 aa17.14■□□□□ 0.33
PRPF40A-211ENST00000493468 RIPK3Q9Y572 518 aa17.14■□□□□ 0.33
PRPF40A-211ENST00000493468 GOLIM4O00461 696 aa17.13■□□□□ 0.33
PRPF40A-211ENST00000493468 ERC2O15083 957 aa17.13■□□□□ 0.33
PRPF40A-211ENST00000493468 PRKAB2O43741 272 aa17.13■□□□□ 0.33
PRPF40A-211ENST00000493468 MBD4O95243 580 aa17.13■□□□□ 0.33
PRPF40A-211ENST00000493468 POU3F3P20264 500 aaPredicted RBP17.13■□□□□ 0.33
PRPF40A-211ENST00000493468 HSP90AB4PQ58FF6 505 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms