RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 KIFC2Q96AC6 838 aa16.23■□□□□ 0.19
COL6A3-211ENST00000491233 TINF2Q9BSI4 451 aa16.23■□□□□ 0.19
COL6A3-211ENST00000491233 NRBP1Q9UHY1 535 aa16.23■□□□□ 0.19
COL6A3-211ENST00000491233 SYNPO2Q9UMS6 1093 aa16.23■□□□□ 0.19
COL6A3-211ENST00000491233 DIS3Q9Y2L1 958 aaKnown RBP16.23■□□□□ 0.19
COL6A3-211ENST00000491233 RIPK3Q9Y572 518 aa16.23■□□□□ 0.19
COL6A3-211ENST00000491233 SLC4A3P48751 1232 aa16.22■□□□□ 0.19
COL6A3-211ENST00000491233 TFAP4Q01664 338 aa16.22■□□□□ 0.19
COL6A3-211ENST00000491233 SLFN13Q68D06 897 aa16.22■□□□□ 0.19
COL6A3-211ENST00000491233 FEM1BQ9UK73 627 aa16.22■□□□□ 0.19
COL6A3-211ENST00000491233 ISY1Q9ULR0 285 aaKnown RBP16.22■□□□□ 0.19
COL6A3-211ENST00000491233 ATP11BQ9Y2G3 1177 aa16.22■□□□□ 0.19
COL6A3-211ENST00000491233 CTDP1Q9Y5B0 961 aaPredicted RBP16.22■□□□□ 0.19
COL6A3-211ENST00000491233 ATP2A1O14983 1001 aa16.21■□□□□ 0.19
COL6A3-211ENST00000491233 ZBED4O75132 1171 aa16.21■□□□□ 0.19
COL6A3-211ENST00000491233 TAL1P17542 331 aaPredicted RBP16.21■□□□□ 0.19
COL6A3-211ENST00000491233 PDE1AP54750 535 aa16.21■□□□□ 0.19
COL6A3-211ENST00000491233 HDAC1Q13547 482 aaPredicted RBP16.21■□□□□ 0.19
COL6A3-211ENST00000491233 LRRC41Q15345 812 aa16.21■□□□□ 0.19
COL6A3-211ENST00000491233 EVI5LQ96CN4 794 aa16.21■□□□□ 0.19
COL6A3-211ENST00000491233 SLC38A10Q9HBR0 1119 aa16.21■□□□□ 0.19
COL6A3-211ENST00000491233 RAVER2Q9HCJ3 691 aaKnown RBP16.21■□□□□ 0.19
COL6A3-211ENST00000491233 XPNPEP3Q9NQH7 507 aa16.21■□□□□ 0.19
COL6A3-211ENST00000491233 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.21■□□□□ 0.19
COL6A3-211ENST00000491233 LRRC37A2A6NM11 1700 aa16.21■□□□□ 0.19
COL6A3-211ENST00000491233 RARBP10826 455 aa16.2■□□□□ 0.18
COL6A3-211ENST00000491233 BMP3P12645 472 aa16.2■□□□□ 0.18
COL6A3-211ENST00000491233 ADCYAP1R1P41586 468 aa16.2■□□□□ 0.18
COL6A3-211ENST00000491233 CTDSPL2Q05D32 466 aa16.2■□□□□ 0.18
COL6A3-211ENST00000491233 VPS53Q5VIR6 699 aa16.2■□□□□ 0.18
COL6A3-211ENST00000491233 SLC39A5Q6ZMH5 540 aa16.2■□□□□ 0.18
COL6A3-211ENST00000491233 FERMT2Q96AC1 680 aa16.2■□□□□ 0.18
COL6A3-211ENST00000491233 LENG1Q96BZ8 264 aaPredicted RBP16.2■□□□□ 0.18
COL6A3-211ENST00000491233 DDX11Q96FC9 970 aa16.2■□□□□ 0.18
COL6A3-211ENST00000491233 YTHDC1Q96MU7 727 aaKnown RBP16.2■□□□□ 0.18
COL6A3-211ENST00000491233 LBHD1Q9BQE6 289 aaPredicted RBP16.2■□□□□ 0.18
COL6A3-211ENST00000491233 CNPY2Q9Y2B0 182 aa16.2■□□□□ 0.18
COL6A3-211ENST00000491233 DNAJC25-GNG10A0A024R161 153 aa16.19■□□□□ 0.18
COL6A3-211ENST00000491233 TSPY2A6NKD2 308 aa16.19■□□□□ 0.18
COL6A3-211ENST00000491233 ZNF865P0CJ78 1059 aaPredicted RBP16.19■□□□□ 0.18
COL6A3-211ENST00000491233 AKR1A1P14550 325 aa16.19■□□□□ 0.18
COL6A3-211ENST00000491233 SNX17Q15036 470 aa16.19■□□□□ 0.18
COL6A3-211ENST00000491233 LRIT3Q3SXY7 679 aa16.19■□□□□ 0.18
COL6A3-211ENST00000491233 TRIM60Q495X7 471 aa16.19■□□□□ 0.18
COL6A3-211ENST00000491233 CHMP4CQ96CF2 233 aa16.19■□□□□ 0.18
COL6A3-211ENST00000491233 PRKAG2Q9UGJ0 569 aa16.19■□□□□ 0.18
COL6A3-211ENST00000491233 LAMA4Q16363 1823 aa16.19■□□□□ 0.18
COL6A3-211ENST00000491233 SZT2Q5T011 3432 aa16.19■□□□□ 0.18
COL6A3-211ENST00000491233 A0A0D9SFI3 127 aa16.18■□□□□ 0.18
COL6A3-211ENST00000491233 TMEM232C9JQI7 657 aa16.18■□□□□ 0.18
COL6A3-211ENST00000491233 PGK1P00558 417 aa16.18■□□□□ 0.18
COL6A3-211ENST00000491233 OAZ1P54368 228 aa16.18■□□□□ 0.18
COL6A3-211ENST00000491233 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.18■□□□□ 0.18
COL6A3-211ENST00000491233 MSL3Q8N5Y2 521 aaKnown RBP16.18■□□□□ 0.18
COL6A3-211ENST00000491233 GMCL1Q96IK5 515 aa16.18■□□□□ 0.18
COL6A3-211ENST00000491233 LNPKQ9C0E8 428 aa16.18■□□□□ 0.18
COL6A3-211ENST00000491233 INCENPQ9NQS7 918 aa16.18■□□□□ 0.18
COL6A3-211ENST00000491233 PRDM5Q9NQX1 630 aaPredicted RBP16.18■□□□□ 0.18
COL6A3-211ENST00000491233 HELLSQ9NRZ9 838 aa16.18■□□□□ 0.18
COL6A3-211ENST00000491233 ZHX1Q9UKY1 873 aaPredicted RBP16.18■□□□□ 0.18
COL6A3-211ENST00000491233 STX8Q9UNK0 236 aa16.18■□□□□ 0.18
COL6A3-211ENST00000491233 PHF24Q9UPV7 400 aa16.18■□□□□ 0.18
COL6A3-211ENST00000491233 SYNGAP1Q96PV0 1343 aa16.18■□□□□ 0.18
COL6A3-211ENST00000491233 LCTP09848 1927 aa16.17■□□□□ 0.18
COL6A3-211ENST00000491233 NMT2O60551 498 aa16.17■□□□□ 0.18
COL6A3-211ENST00000491233 SLC1A4P43007 532 aa16.17■□□□□ 0.18
COL6A3-211ENST00000491233 STAT2P52630 851 aa16.17■□□□□ 0.18
COL6A3-211ENST00000491233 IKQ13123 557 aaPredicted RBP16.17■□□□□ 0.18
COL6A3-211ENST00000491233 PPP4R3BQ5MIZ7 849 aa16.17■□□□□ 0.18
COL6A3-211ENST00000491233 RASGRP2Q7LDG7 609 aa16.17■□□□□ 0.18
COL6A3-211ENST00000491233 RNF180Q86T96 592 aa16.17■□□□□ 0.18
COL6A3-211ENST00000491233 FAM160B2Q86V87 743 aa16.17■□□□□ 0.18
COL6A3-211ENST00000491233 ANKRD35Q8N283 1001 aa16.17■□□□□ 0.18
COL6A3-211ENST00000491233 CHST13Q8NET6 341 aa16.17■□□□□ 0.18
COL6A3-211ENST00000491233 FAM227BQ96M60 508 aa16.17■□□□□ 0.18
COL6A3-211ENST00000491233 FGD4Q96M96 766 aa16.17■□□□□ 0.18
COL6A3-211ENST00000491233 HOMER2Q9NSB8 354 aa16.17■□□□□ 0.18
COL6A3-211ENST00000491233 FBXO40Q9UH90 709 aa16.17■□□□□ 0.18
COL6A3-211ENST00000491233 ANAPC4Q9UJX5 808 aa16.17■□□□□ 0.18
COL6A3-211ENST00000491233 TACC3Q9Y6A5 838 aa16.17■□□□□ 0.18
COL6A3-211ENST00000491233 RANBP6O60518 1105 aaKnown RBP16.16■□□□□ 0.18
COL6A3-211ENST00000491233 ADAMTS4O75173 837 aa16.16■□□□□ 0.18
COL6A3-211ENST00000491233 SNAI1O95863 264 aaPredicted RBP16.16■□□□□ 0.18
COL6A3-211ENST00000491233 FDX1P10109 184 aa16.16■□□□□ 0.18
COL6A3-211ENST00000491233 MCCP23508 829 aa16.16■□□□□ 0.18
COL6A3-211ENST00000491233 MAMDC4Q6UXC1 1216 aa16.16■□□□□ 0.18
COL6A3-211ENST00000491233 ZNF467Q7Z7K2 595 aaPredicted RBP16.16■□□□□ 0.18
COL6A3-211ENST00000491233 PDLIM7Q9NR12 457 aa16.16■□□□□ 0.18
COL6A3-211ENST00000491233 IL17RBQ9NRM6 502 aa16.16■□□□□ 0.18
COL6A3-211ENST00000491233 SYNRGQ9UMZ2 1314 aa16.16■□□□□ 0.18
COL6A3-211ENST00000491233 ORC4O43929 436 aa16.15■□□□□ 0.18
COL6A3-211ENST00000491233 NMIQ13287 307 aaPredicted RBP16.15■□□□□ 0.18
COL6A3-211ENST00000491233 ALX1Q15699 326 aa16.15■□□□□ 0.18
COL6A3-211ENST00000491233 C1orf53Q5VUE5 145 aa16.15■□□□□ 0.18
COL6A3-211ENST00000491233 GPR153Q6NV75 609 aa16.15■□□□□ 0.18
COL6A3-211ENST00000491233 KCTD1Q719H9 257 aa16.15■□□□□ 0.18
COL6A3-211ENST00000491233 Q7L0L9 218 aa16.15■□□□□ 0.18
COL6A3-211ENST00000491233 CHURC1Q8WUH1 139 aa16.15■□□□□ 0.18
COL6A3-211ENST00000491233 STAG1Q8WVM7 1258 aa16.15■□□□□ 0.18
COL6A3-211ENST00000491233 ACAD9Q9H845 621 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms