RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 RASA1P20936 1047 aa6.77□□□□□ -1.33
VPS41-214ENST00000490924 AFF1P51825 1210 aaKnown RBP6.77□□□□□ -1.33
VPS41-214ENST00000490924 CASP7P55210 303 aa6.77□□□□□ -1.33
VPS41-214ENST00000490924 SEC13P55735 322 aa6.77□□□□□ -1.33
VPS41-214ENST00000490924 RTN1Q16799 776 aa6.77□□□□□ -1.33
VPS41-214ENST00000490924 MSL1Q68DK7 614 aa6.77□□□□□ -1.33
VPS41-214ENST00000490924 ADALQ6DHV7 355 aa6.77□□□□□ -1.33
VPS41-214ENST00000490924 SHISA2Q6UWI4 295 aa6.77□□□□□ -1.33
VPS41-214ENST00000490924 MPRIPQ6WCQ1 1025 aa6.77□□□□□ -1.33
VPS41-214ENST00000490924 SLC51AQ86UW1 340 aa6.77□□□□□ -1.33
VPS41-214ENST00000490924 IFNL2Q8IZJ0 200 aa6.77□□□□□ -1.33
VPS41-214ENST00000490924 TSEN2Q8NCE0 465 aaKnown RBP6.77□□□□□ -1.33
VPS41-214ENST00000490924 CCDC150Q8NCX0 1101 aa6.77□□□□□ -1.33
VPS41-214ENST00000490924 NSUN7Q8NE18 718 aaKnown RBP6.77□□□□□ -1.33
VPS41-214ENST00000490924 C7orf43Q8WVR3 580 aa6.77□□□□□ -1.33
VPS41-214ENST00000490924 RAPGEF4Q8WZA2 1011 aa6.77□□□□□ -1.33
VPS41-214ENST00000490924 ZNF512BQ96KM6 892 aaPredicted RBP6.77□□□□□ -1.33
VPS41-214ENST00000490924 FMNL2Q96PY5 1086 aa6.77□□□□□ -1.33
VPS41-214ENST00000490924 MTA3Q9BTC8 594 aa6.77□□□□□ -1.33
VPS41-214ENST00000490924 TRIM5Q9C035 493 aa6.77□□□□□ -1.33
VPS41-214ENST00000490924 PCMTD2Q9NV79 361 aa6.77□□□□□ -1.33
VPS41-214ENST00000490924 OGFRQ9NZT2 677 aa6.77□□□□□ -1.33
VPS41-214ENST00000490924 DBNLQ9UJU6 430 aaKnown RBP6.77□□□□□ -1.33
VPS41-214ENST00000490924 ALS2Q96Q42 1657 aa6.77□□□□□ -1.33
VPS41-214ENST00000490924 LAMB4A4D0S4 1761 aa6.77□□□□□ -1.33
VPS41-214ENST00000490924 ZMYM6O95789 1325 aa6.76□□□□□ -1.33
VPS41-214ENST00000490924 ZNF609O15014 1411 aa6.76□□□□□ -1.33
VPS41-214ENST00000490924 KDM6AO15550 1401 aaPredicted RBP6.76□□□□□ -1.33
VPS41-214ENST00000490924 TCHHQ07283 1943 aa6.76□□□□□ -1.33
VPS41-214ENST00000490924 TGFBR3LH3BV60 316 aa6.76□□□□□ -1.33
VPS41-214ENST00000490924 IKBKBO14920 756 aa6.76□□□□□ -1.33
VPS41-214ENST00000490924 AP5Z1O43299 807 aa6.76□□□□□ -1.33
VPS41-214ENST00000490924 PAX4O43316 350 aa6.76□□□□□ -1.33
VPS41-214ENST00000490924 KCNQ3O43525 872 aa6.76□□□□□ -1.33
VPS41-214ENST00000490924 MAP4K4O95819 1239 aaPredicted RBP6.76□□□□□ -1.33
VPS41-214ENST00000490924 CYP21A2P08686 494 aa6.76□□□□□ -1.33
VPS41-214ENST00000490924 PHKG2P15735 406 aa6.76□□□□□ -1.33
VPS41-214ENST00000490924 ZSCAN20P17040 1043 aaPredicted RBP6.76□□□□□ -1.33
VPS41-214ENST00000490924 RCAN1P53805 252 aa6.76□□□□□ -1.33
VPS41-214ENST00000490924 TPM4P67936 248 aa6.76□□□□□ -1.33
VPS41-214ENST00000490924 SNW1Q13573 536 aaKnown RBP6.76□□□□□ -1.33
VPS41-214ENST00000490924 PROSER3Q2NL68 480 aa6.76□□□□□ -1.33
VPS41-214ENST00000490924 CWF19L2Q2TBE0 894 aaKnown RBP6.76□□□□□ -1.33
VPS41-214ENST00000490924 FOXD4L6Q3SYB3 417 aaPredicted RBP6.76□□□□□ -1.33
VPS41-214ENST00000490924 CT47A1Q5JQC4 288 aaPredicted RBP6.76□□□□□ -1.33
VPS41-214ENST00000490924 POTEAQ6S8J7 498 aa6.76□□□□□ -1.33
VPS41-214ENST00000490924 IGF2-ASQ6U949 168 aa6.76□□□□□ -1.33
VPS41-214ENST00000490924 FOXD4L3Q6VB84 417 aaPredicted RBP6.76□□□□□ -1.33
VPS41-214ENST00000490924 ZNF589Q86UQ0 364 aaPredicted RBP6.76□□□□□ -1.33
VPS41-214ENST00000490924 FBXO11Q86XK2 927 aa6.76□□□□□ -1.33
VPS41-214ENST00000490924 LRRC8AQ8IWT6 810 aa6.76□□□□□ -1.33
VPS41-214ENST00000490924 CCDC191Q8NCU4 936 aa6.76□□□□□ -1.33
VPS41-214ENST00000490924 CCDC112Q8NEF3 446 aa6.76□□□□□ -1.33
VPS41-214ENST00000490924 BICD2Q8TD16 824 aa6.76□□□□□ -1.33
VPS41-214ENST00000490924 WFDC12Q8WWY7 111 aa6.76□□□□□ -1.33
VPS41-214ENST00000490924 BRF1Q92994 677 aa6.76□□□□□ -1.33
VPS41-214ENST00000490924 PGBD1Q96JS3 809 aa6.76□□□□□ -1.33
VPS41-214ENST00000490924 SRRTQ9BXP5 876 aaKnown RBP6.76□□□□□ -1.33
VPS41-214ENST00000490924 FRRS1LQ9P0K9 344 aa6.76□□□□□ -1.33
VPS41-214ENST00000490924 CLIP2Q9UDT6 1046 aa6.76□□□□□ -1.33
VPS41-214ENST00000490924 PRDM4Q9UKN5 801 aa6.76□□□□□ -1.33
VPS41-214ENST00000490924 PYCARDQ9ULZ3 195 aa6.76□□□□□ -1.33
VPS41-214ENST00000490924 PA2G4Q9UQ80 394 aaKnown RBP6.76□□□□□ -1.33
VPS41-214ENST00000490924 SETD1BQ9UPS6 1966 aaKnown RBP6.76□□□□□ -1.33
VPS41-214ENST00000490924 ATRNO75882 1429 aa6.76□□□□□ -1.33
VPS41-214ENST00000490924 GLI3P10071 1580 aa6.75□□□□□ -1.33
VPS41-214ENST00000490924 C1orf167Q5SNV9 1468 aa6.75□□□□□ -1.33
VPS41-214ENST00000490924 NID2Q14112 1375 aa6.75□□□□□ -1.33
VPS41-214ENST00000490924 IREB2P48200 963 aaKnown RBP6.75□□□□□ -1.33
VPS41-214ENST00000490924 TUBB4BP68371 445 aa6.75□□□□□ -1.33
VPS41-214ENST00000490924 CLDN10P78369 228 aa6.75□□□□□ -1.33
VPS41-214ENST00000490924 RBM10P98175 930 aaKnown RBP6.75□□□□□ -1.33
VPS41-214ENST00000490924 SCRN1Q12765 414 aa6.75□□□□□ -1.33
VPS41-214ENST00000490924 Q6ZUG5 572 aa6.75□□□□□ -1.33
VPS41-214ENST00000490924 CCDC186Q7Z3E2 898 aa6.75□□□□□ -1.33
VPS41-214ENST00000490924 LUZP1Q86V48 1076 aa6.75□□□□□ -1.33
VPS41-214ENST00000490924 SIX5Q8N196 739 aa6.75□□□□□ -1.33
VPS41-214ENST00000490924 USHBP1Q8N6Y0 703 aa6.75□□□□□ -1.33
VPS41-214ENST00000490924 NECAB1Q8N987 351 aa6.75□□□□□ -1.33
VPS41-214ENST00000490924 JMYQ8N9B5 988 aa6.75□□□□□ -1.33
VPS41-214ENST00000490924 XAGE3Q8WTP9 111 aa6.75□□□□□ -1.33
VPS41-214ENST00000490924 MRPS27Q92552 414 aaKnown RBP6.75□□□□□ -1.33
VPS41-214ENST00000490924 LTV1Q96GA3 475 aaPredicted RBP6.75□□□□□ -1.33
VPS41-214ENST00000490924 ERO1AQ96HE7 468 aa6.75□□□□□ -1.33
VPS41-214ENST00000490924 PLA2G12BQ9BX93 195 aa6.75□□□□□ -1.33
VPS41-214ENST00000490924 GSX2Q9BZM3 304 aa6.75□□□□□ -1.33
VPS41-214ENST00000490924 BOLA2Q9H3K6 86 aa6.75□□□□□ -1.33
VPS41-214ENST00000490924 L2HGDHQ9H9P8 463 aa6.75□□□□□ -1.33
VPS41-214ENST00000490924 RNF112Q9ULX5 631 aa6.75□□□□□ -1.33
VPS41-214ENST00000490924 AKAP2Q9Y2D5 859 aa6.75□□□□□ -1.33
VPS41-214ENST00000490924 PTPDC1A2A3K4 754 aa6.74□□□□□ -1.33
VPS41-214ENST00000490924 GOLGA6L9A6NEM1 432 aa6.74□□□□□ -1.33
VPS41-214ENST00000490924 BECN2A8MW95 431 aa6.74□□□□□ -1.33
VPS41-214ENST00000490924 ERVV-2B6SEH9 535 aa6.74□□□□□ -1.33
VPS41-214ENST00000490924 RNF113AO15541 343 aaKnown RBP6.74□□□□□ -1.33
VPS41-214ENST00000490924 ATP8B1O43520 1251 aa6.74□□□□□ -1.33
VPS41-214ENST00000490924 CDKL5O76039 1030 aa6.74□□□□□ -1.33
VPS41-214ENST00000490924 TPM1P09493 284 aa6.74□□□□□ -1.33
VPS41-214ENST00000490924 TNNT1P13805 278 aa6.74□□□□□ -1.33
VPS41-214ENST00000490924 CPA1P15085 419 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms