RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 SH2D4AQ9H788 454 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 PNMA2Q9UL42 364 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 SLC4A4Q9Y6R1 1079 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 BLMP54132 1417 aaPredicted RBP7.94□□□□□ -1.14
SYNE1-228ENST00000490135 MX2P20592 715 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 NBPF14Q5TI25 921 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 ANKRD20A3Q5VUR7 823 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 KLHL29Q96CT2 875 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 RBM47A0AV96 593 aaKnown RBP7.94□□□□□ -1.14
SYNE1-228ENST00000490135 MYL1P05976 194 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 RAB27AP51159 221 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 TBL3Q12788 808 aaKnown RBP7.94□□□□□ -1.14
SYNE1-228ENST00000490135 ALS2CLQ60I27 953 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 DRAXINQ8NBI3 349 aaPredicted RBP7.94□□□□□ -1.14
SYNE1-228ENST00000490135 ESYT1Q9BSJ8 1104 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 EPN3Q9H201 632 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 DKK3Q9UBP4 350 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 R3HDM2Q9Y2K5 976 aaKnown RBP7.94□□□□□ -1.14
SYNE1-228ENST00000490135 RPS6KA5O75582 802 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 ANP32DO95626 131 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 RRS1Q15050 365 aaKnown RBP7.94□□□□□ -1.14
SYNE1-228ENST00000490135 CYP26C1Q6V0L0 522 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 PLCB1Q9NQ66 1216 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 MRGBPQ9NV56 204 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 IVNS1ABPQ9Y6Y0 642 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 RTL9Q8NET4 1388 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 SPDYE2BA6NHP3 402 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 KRT14P02533 472 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 SPDYE6P0CI01 402 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 MYBL1P10243 752 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 CCND1P24385 295 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 NOP14P78316 857 aaKnown RBP7.93□□□□□ -1.14
SYNE1-228ENST00000490135 IL1RL1Q01638 556 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 TSTA3Q13630 321 aaPredicted RBP7.93□□□□□ -1.14
SYNE1-228ENST00000490135 TAF7Q15545 349 aaPredicted RBP7.93□□□□□ -1.14
SYNE1-228ENST00000490135 NXNQ6DKJ4 435 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 C4orf50Q6ZRC1 276 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 SSH1Q8WYL5 1049 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 POMGNT1Q8WZA1 660 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 SNRKQ9NRH2 765 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 THOC2Q8NI27 1593 aaKnown RBP7.93□□□□□ -1.14
SYNE1-228ENST00000490135 CUX1P39880 1505 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 CCDC169A6NNP5 214 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 KDM1AO60341 852 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 DKC1O60832 514 aaKnown RBP eCLIP7.93□□□□□ -1.14
SYNE1-228ENST00000490135 GSTA1P08263 222 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 GSTA2P09210 222 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 GUCY2FP51841 1108 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 AK2P54819 239 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 MYL5Q02045 173 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 GJC2Q5T442 439 aaPredicted RBP7.93□□□□□ -1.14
SYNE1-228ENST00000490135 FBXO9Q9UK97 447 aaPredicted RBP7.93□□□□□ -1.14
SYNE1-228ENST00000490135 TRIM75PA6NK02 468 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 NOP56O00567 594 aaKnown RBP7.93□□□□□ -1.14
SYNE1-228ENST00000490135 LMNAP02545 664 aaKnown RBP7.93□□□□□ -1.14
SYNE1-228ENST00000490135 PHBP35232 272 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 NLRP12P59046 1061 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 TSPY1Q01534 308 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 MTMR3Q13615 1198 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 ZNF449Q6P9G9 518 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 CCDC124Q96CT7 223 aaKnown RBP7.93□□□□□ -1.14
SYNE1-228ENST00000490135 TSPAN18Q96SJ8 248 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 IQSEC3Q9UPP2 1182 aaPredicted RBP7.93□□□□□ -1.14
SYNE1-228ENST00000490135 ZMYND10O75800 440 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 RTN3O95197 1032 aaPredicted RBP7.93□□□□□ -1.14
SYNE1-228ENST00000490135 ATP6V1G2O95670 118 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 KRT2P35908 639 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 SCNN1BP51168 640 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 RAD23BP54727 409 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 FNBP4Q8N3X1 1017 aaPredicted RBP7.93□□□□□ -1.14
SYNE1-228ENST00000490135 SKA2Q8WVK7 121 aaPredicted RBP7.93□□□□□ -1.14
SYNE1-228ENST00000490135 SPZ1Q9BXG8 430 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 ZBTB3Q9H5J0 574 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 ECT2Q9H8V3 914 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 ZNF148Q9UQR1 794 aa7.93□□□□□ -1.14
SYNE1-228ENST00000490135 NR1I2O75469 434 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 PLCG2P16885 1265 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 GNA11P29992 359 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 GCLCP48506 637 aaPredicted RBP7.92□□□□□ -1.14
SYNE1-228ENST00000490135 LONRF3Q496Y0 759 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 DCUN1D2Q6PH85 259 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 ZCWPW1Q9H0M4 648 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 CCDC68Q9H2F9 335 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 ECHDC1Q9NTX5 307 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 ASIC3Q9UHC3 531 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 TEKT2Q9UIF3 430 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 SAR1BQ9Y6B6 198 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 EME2A4GXA9 379 aaPredicted RBP7.92□□□□□ -1.14
SYNE1-228ENST00000490135 TTC4O95801 387 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 KCNA2P16389 499 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 KRT15P19012 456 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 ADKP55263 362 aaKnown RBP7.92□□□□□ -1.14
SYNE1-228ENST00000490135 NONOQ15233 471 aaKnown RBP eCLIP7.92□□□□□ -1.14
SYNE1-228ENST00000490135 UBE3BQ7Z3V4 1068 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 ANKRD35Q8N283 1001 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 P3H4Q92791 437 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 FUT8Q9BYC5 575 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 DNAAF2Q9NVR5 837 aaKnown RBP7.92□□□□□ -1.14
SYNE1-228ENST00000490135 SCINQ9Y6U3 715 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 ERBINQ96RT1 1412 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms