RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 TEX13BQ9BXU2 312 aa17.64■□□□□ 0.41
TRIM54-204ENST00000488321 KRT23Q9C075 422 aa17.64■□□□□ 0.41
TRIM54-204ENST00000488321 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.64■□□□□ 0.41
TRIM54-204ENST00000488321 HMX1Q9NP08 348 aaPredicted RBP17.64■□□□□ 0.41
TRIM54-204ENST00000488321 U3KPZ7 1027 aaPredicted RBP17.64■□□□□ 0.41
TRIM54-204ENST00000488321 COPB2P35606 906 aa17.63■□□□□ 0.41
TRIM54-204ENST00000488321 GJA8P48165 433 aa17.63■□□□□ 0.41
TRIM54-204ENST00000488321 KCTD2Q14681 263 aa17.63■□□□□ 0.41
TRIM54-204ENST00000488321 BMP2KLQ5H9B9 411 aa17.63■□□□□ 0.41
TRIM54-204ENST00000488321 RCSD1Q6JBY9 416 aa17.63■□□□□ 0.41
TRIM54-204ENST00000488321 KIAA1211Q6ZU35 1233 aa17.63■□□□□ 0.41
TRIM54-204ENST00000488321 DCAF4Q8WV16 495 aa17.63■□□□□ 0.41
TRIM54-204ENST00000488321 TTC14Q96N46 770 aa17.63■□□□□ 0.41
TRIM54-204ENST00000488321 MMP19Q99542 508 aa17.63■□□□□ 0.41
TRIM54-204ENST00000488321 CNNM2Q9H8M5 875 aa17.63■□□□□ 0.41
TRIM54-204ENST00000488321 RAVER2Q9HCJ3 691 aaKnown RBP17.63■□□□□ 0.41
TRIM54-204ENST00000488321 HOXC6P09630 235 aa17.62■□□□□ 0.41
TRIM54-204ENST00000488321 NT5C2P49902 561 aa17.62■□□□□ 0.41
TRIM54-204ENST00000488321 TRDNQ13061 729 aa17.62■□□□□ 0.41
TRIM54-204ENST00000488321 CCDC178Q5BJE1 867 aa17.62■□□□□ 0.41
TRIM54-204ENST00000488321 MFSD14CQ5VZR4 134 aa17.62■□□□□ 0.41
TRIM54-204ENST00000488321 NPLOC4Q8TAT6 608 aa17.62■□□□□ 0.41
TRIM54-204ENST00000488321 SLC38A10Q9HBR0 1119 aa17.62■□□□□ 0.41
TRIM54-204ENST00000488321 SLC5A4Q9NY91 659 aa17.62■□□□□ 0.41
TRIM54-204ENST00000488321 FLRT1Q9NZU1 646 aa17.62■□□□□ 0.41
TRIM54-204ENST00000488321 RPTORQ8N122 1335 aa17.62■□□□□ 0.41
TRIM54-204ENST00000488321 MGAMO43451 1857 aa17.61■□□□□ 0.41
TRIM54-204ENST00000488321 SGPL1O95470 568 aa17.61■□□□□ 0.41
TRIM54-204ENST00000488321 TFRCP02786 760 aaKnown RBP17.61■□□□□ 0.41
TRIM54-204ENST00000488321 CYP21A2P08686 494 aa17.61■□□□□ 0.41
TRIM54-204ENST00000488321 CACNB2Q08289 660 aaPredicted RBP17.61■□□□□ 0.41
TRIM54-204ENST00000488321 ABRAQ8N0Z2 381 aa17.61■□□□□ 0.41
TRIM54-204ENST00000488321 SHISA4Q96DD7 197 aa17.61■□□□□ 0.41
TRIM54-204ENST00000488321 ZSCAN10Q96SZ4 725 aaPredicted RBP17.61■□□□□ 0.41
TRIM54-204ENST00000488321 UBAC1Q9BSL1 405 aa17.61■□□□□ 0.41
TRIM54-204ENST00000488321 GPCPD1Q9NPB8 672 aa17.61■□□□□ 0.41
TRIM54-204ENST00000488321 PAK6Q9NQU5 681 aaPredicted RBP17.61■□□□□ 0.41
TRIM54-204ENST00000488321 ZSWIM5Q9P217 1185 aa17.61■□□□□ 0.41
TRIM54-204ENST00000488321 RIPK3Q9Y572 518 aa17.61■□□□□ 0.41
TRIM54-204ENST00000488321 FRMPD2Q68DX3 1309 aaPredicted RBP17.61■□□□□ 0.41
TRIM54-204ENST00000488321 BRCA2P51587 3418 aa17.6■□□□□ 0.41
TRIM54-204ENST00000488321 COBLO75128 1261 aa17.6■□□□□ 0.41
TRIM54-204ENST00000488321 FDX1P10109 184 aa17.6■□□□□ 0.41
TRIM54-204ENST00000488321 CYP2C19P33261 490 aa17.6■□□□□ 0.41
TRIM54-204ENST00000488321 SNAP25P60880 206 aa17.6■□□□□ 0.41
TRIM54-204ENST00000488321 MAP3K21Q5TCX8 1036 aa17.6■□□□□ 0.41
TRIM54-204ENST00000488321 CCDC174Q6PII3 467 aa17.6■□□□□ 0.41
TRIM54-204ENST00000488321 DGKHQ86XP1 1220 aa17.6■□□□□ 0.41
TRIM54-204ENST00000488321 ESYT1Q9BSJ8 1104 aa17.6■□□□□ 0.41
TRIM54-204ENST00000488321 KAT14Q9H8E8 782 aa17.6■□□□□ 0.41
TRIM54-204ENST00000488321 A0A0G2JMZ2 1700 aa17.6■□□□□ 0.41
TRIM54-204ENST00000488321 TNKSO95271 1327 aa17.59■□□□□ 0.41
TRIM54-204ENST00000488321 ATP2A1O14983 1001 aa17.59■□□□□ 0.41
TRIM54-204ENST00000488321 PLA2G6O60733 806 aa17.59■□□□□ 0.41
TRIM54-204ENST00000488321 PGK2P07205 417 aa17.59■□□□□ 0.41
TRIM54-204ENST00000488321 PDHBP11177 359 aa17.59■□□□□ 0.41
TRIM54-204ENST00000488321 SLC16A2P36021 539 aa17.59■□□□□ 0.41
TRIM54-204ENST00000488321 OAZ1P54368 228 aa17.59■□□□□ 0.41
TRIM54-204ENST00000488321 TTBK2Q6IQ55 1244 aa17.59■□□□□ 0.41
TRIM54-204ENST00000488321 CASC1Q6TDU7 716 aa17.59■□□□□ 0.41
TRIM54-204ENST00000488321 RALYLQ86SE5 291 aaKnown RBP17.59■□□□□ 0.41
TRIM54-204ENST00000488321 MAP4K1Q92918 833 aa17.59■□□□□ 0.41
TRIM54-204ENST00000488321 ANO2Q9NQ90 1003 aa17.59■□□□□ 0.41
TRIM54-204ENST00000488321 HOMER2Q9NSB8 354 aa17.59■□□□□ 0.41
TRIM54-204ENST00000488321 PRR12Q9ULL5 1215 aa17.59■□□□□ 0.41
TRIM54-204ENST00000488321 RBM8AQ9Y5S9 174 aaKnown RBP17.59■□□□□ 0.41
TRIM54-204ENST00000488321 CNGA1P29973 690 aa17.58■□□□□ 0.4
TRIM54-204ENST00000488321 CCND3P30281 292 aaPredicted RBP17.58■□□□□ 0.4
TRIM54-204ENST00000488321 ENAHQ8N8S7 591 aaPredicted RBP17.58■□□□□ 0.4
TRIM54-204ENST00000488321 PNMA1Q8ND90 353 aa17.58■□□□□ 0.4
TRIM54-204ENST00000488321 DDX11Q96FC9 970 aa17.58■□□□□ 0.4
TRIM54-204ENST00000488321 E7EWF7 191 aa17.57■□□□□ 0.4
TRIM54-204ENST00000488321 CDC45O75419 566 aa17.57■□□□□ 0.4
TRIM54-204ENST00000488321 FARP2O94887 1054 aaPredicted RBP17.57■□□□□ 0.4
TRIM54-204ENST00000488321 ZNF543Q08ER8 600 aa17.57■□□□□ 0.4
TRIM54-204ENST00000488321 SYDE2Q5VT97 1194 aa17.57■□□□□ 0.4
TRIM54-204ENST00000488321 OLFML2BQ68BL8 750 aa17.57■□□□□ 0.4
TRIM54-204ENST00000488321 CYB5R4Q7L1T6 521 aa17.57■□□□□ 0.4
TRIM54-204ENST00000488321 ANKRD35Q8N283 1001 aa17.57■□□□□ 0.4
TRIM54-204ENST00000488321 MAML3Q96JK9 1138 aa17.57■□□□□ 0.4
TRIM54-204ENST00000488321 AGBL1Q96MI9 1066 aa17.57■□□□□ 0.4
TRIM54-204ENST00000488321 FBXO40Q9UH90 709 aa17.57■□□□□ 0.4
TRIM54-204ENST00000488321 TAF6LQ9Y6J9 622 aa17.57■□□□□ 0.4
TRIM54-204ENST00000488321 GOLGA8HP0CJ92 632 aa17.56■□□□□ 0.4
TRIM54-204ENST00000488321 ALAS1P13196 640 aa17.56■□□□□ 0.4
TRIM54-204ENST00000488321 IFIT1BQ5T764 474 aaKnown RBP17.56■□□□□ 0.4
TRIM54-204ENST00000488321 CHST13Q8NET6 341 aa17.56■□□□□ 0.4
TRIM54-204ENST00000488321 NCOA7Q8NI08 942 aa17.56■□□□□ 0.4
TRIM54-204ENST00000488321 LSG1Q9H089 658 aaKnown RBP17.56■□□□□ 0.4
TRIM54-204ENST00000488321 CRISPLD2Q9H0B8 497 aa17.56■□□□□ 0.4
TRIM54-204ENST00000488321 RNF146Q9NTX7 359 aa17.56■□□□□ 0.4
TRIM54-204ENST00000488321 RLFQ13129 1914 aa17.56■□□□□ 0.4
TRIM54-204ENST00000488321 ZNF536O15090 1300 aa17.55■□□□□ 0.4
TRIM54-204ENST00000488321 ERICH2A1L162 156 aa17.55■□□□□ 0.4
TRIM54-204ENST00000488321 SNHG28P0DPA3 235 aa17.55■□□□□ 0.4
TRIM54-204ENST00000488321 ZNF792Q3KQV3 632 aa17.55■□□□□ 0.4
TRIM54-204ENST00000488321 GPATCH4Q5T3I0 446 aaKnown RBP17.55■□□□□ 0.4
TRIM54-204ENST00000488321 BTNL9Q6UXG8 535 aa17.55■□□□□ 0.4
TRIM54-204ENST00000488321 ANKS1AQ92625 1134 aa17.55■□□□□ 0.4
TRIM54-204ENST00000488321 ACAD9Q9H845 621 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms