RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 CCDC82Q8N4S0 544 aa14.23□□□□□ -0.13
SDC1-206ENST00000482879 GTF3C6Q969F1 213 aa14.23□□□□□ -0.13
SDC1-206ENST00000482879 ZIC5Q96T25 663 aa14.23□□□□□ -0.13
SDC1-206ENST00000482879 CPVLQ9H3G5 476 aa14.23□□□□□ -0.13
SDC1-206ENST00000482879 FBXO28Q9NVF7 368 aa14.23□□□□□ -0.13
SDC1-206ENST00000482879 RLFQ13129 1914 aa14.23□□□□□ -0.13
SDC1-206ENST00000482879 WDR33Q9C0J8 1336 aaKnown RBP14.22□□□□□ -0.13
SDC1-206ENST00000482879 PLA2G6O60733 806 aa14.22□□□□□ -0.13
SDC1-206ENST00000482879 OSBPP22059 807 aa14.22□□□□□ -0.13
SDC1-206ENST00000482879 VEGFBP49765 207 aa14.22□□□□□ -0.13
SDC1-206ENST00000482879 IRX3P78415 501 aaPredicted RBP14.22□□□□□ -0.13
SDC1-206ENST00000482879 SREBF2Q12772 1141 aa14.22□□□□□ -0.13
SDC1-206ENST00000482879 BECN1Q14457 450 aa14.22□□□□□ -0.13
SDC1-206ENST00000482879 COG2Q14746 738 aa14.22□□□□□ -0.13
SDC1-206ENST00000482879 SYDE2Q5VT97 1194 aa14.22□□□□□ -0.13
SDC1-206ENST00000482879 BTNL9Q6UXG8 535 aa14.22□□□□□ -0.13
SDC1-206ENST00000482879 ANKRD23Q86SG2 305 aa14.22□□□□□ -0.13
SDC1-206ENST00000482879 NBPF11Q86T75 865 aa14.22□□□□□ -0.13
SDC1-206ENST00000482879 SRBD1Q8N5C6 995 aaKnown RBP14.22□□□□□ -0.13
SDC1-206ENST00000482879 KIFC2Q96AC6 838 aa14.22□□□□□ -0.13
SDC1-206ENST00000482879 PTPN18Q99952 460 aa14.22□□□□□ -0.13
SDC1-206ENST00000482879 SLF1Q9BQI6 1058 aa14.22□□□□□ -0.13
SDC1-206ENST00000482879 VAT1LQ9HCJ6 419 aa14.22□□□□□ -0.13
SDC1-206ENST00000482879 PDHXO00330 501 aa14.21□□□□□ -0.13
SDC1-206ENST00000482879 SMARCA1P28370 1054 aa14.21□□□□□ -0.13
SDC1-206ENST00000482879 ST3GAL1Q11201 340 aa14.21□□□□□ -0.13
SDC1-206ENST00000482879 NTRK3Q16288 839 aa14.21□□□□□ -0.13
SDC1-206ENST00000482879 ADGRF4Q8IZF3 695 aa14.21□□□□□ -0.13
SDC1-206ENST00000482879 FAM43AQ8N2R8 423 aa14.21□□□□□ -0.13
SDC1-206ENST00000482879 PRPF38AQ8NAV1 312 aaKnown RBP14.21□□□□□ -0.13
SDC1-206ENST00000482879 ASCC2Q9H1I8 757 aaPredicted RBP14.21□□□□□ -0.13
SDC1-206ENST00000482879 HOXC10Q9NYD6 342 aa14.21□□□□□ -0.13
SDC1-206ENST00000482879 PPP1R9AQ9ULJ8 1098 aa14.21□□□□□ -0.13
SDC1-206ENST00000482879 PRR12Q9ULL5 1215 aa14.21□□□□□ -0.13
SDC1-206ENST00000482879 SLC45A1Q9Y2W3 748 aa14.21□□□□□ -0.13
SDC1-206ENST00000482879 SMCHD1A6NHR9 2005 aa14.2□□□□□ -0.14
SDC1-206ENST00000482879 COL11A1P12107 1806 aaPredicted RBP14.2□□□□□ -0.14
SDC1-206ENST00000482879 IGF2BP3O00425 579 aaKnown RBP eCLIP14.2□□□□□ -0.14
SDC1-206ENST00000482879 CYTH3O43739 400 aa14.2□□□□□ -0.14
SDC1-206ENST00000482879 PPFIA3O75145 1194 aa14.2□□□□□ -0.14
SDC1-206ENST00000482879 CDKL5O76039 1030 aa14.2□□□□□ -0.14
SDC1-206ENST00000482879 IFNAR1P17181 557 aa14.2□□□□□ -0.14
SDC1-206ENST00000482879 DSG3P32926 999 aa14.2□□□□□ -0.14
SDC1-206ENST00000482879 TM4SF4P48230 202 aa14.2□□□□□ -0.14
SDC1-206ENST00000482879 FUT2Q10981 343 aa14.2□□□□□ -0.14
SDC1-206ENST00000482879 CUL4AQ13619 759 aa14.2□□□□□ -0.14
SDC1-206ENST00000482879 SLC35G1Q2M3R5 365 aa14.2□□□□□ -0.14
SDC1-206ENST00000482879 OTUD7BQ6GQQ9 843 aa14.2□□□□□ -0.14
SDC1-206ENST00000482879 IFNL1Q8IU54 200 aa14.2□□□□□ -0.14
SDC1-206ENST00000482879 PIBF1Q8WXW3 757 aa14.2□□□□□ -0.14
SDC1-206ENST00000482879 P2RX7Q99572 595 aaKnown RBP14.2□□□□□ -0.14
SDC1-206ENST00000482879 SPZ1Q9BXG8 430 aa14.2□□□□□ -0.14
SDC1-206ENST00000482879 RIOX1Q9H6W3 641 aa14.2□□□□□ -0.14
SDC1-206ENST00000482879 PNMA3Q9UL41 463 aa14.2□□□□□ -0.14
SDC1-206ENST00000482879 DTNBO60941 627 aa14.19□□□□□ -0.14
SDC1-206ENST00000482879 CTDNEP1O95476 244 aa14.19□□□□□ -0.14
SDC1-206ENST00000482879 MAP2K2P36507 400 aa14.19□□□□□ -0.14
SDC1-206ENST00000482879 SNAP25P60880 206 aa14.19□□□□□ -0.14
SDC1-206ENST00000482879 AKAP17AQ02040 695 aaKnown RBP14.19□□□□□ -0.14
SDC1-206ENST00000482879 SSRP1Q08945 709 aaKnown RBP14.19□□□□□ -0.14
SDC1-206ENST00000482879 REM2Q8IYK8 340 aaPredicted RBP14.19□□□□□ -0.14
SDC1-206ENST00000482879 NSUN7Q8NE18 718 aaKnown RBP14.19□□□□□ -0.14
SDC1-206ENST00000482879 PHKBQ93100 1093 aa14.19□□□□□ -0.14
SDC1-206ENST00000482879 ATG4CQ96DT6 458 aa14.19□□□□□ -0.14
SDC1-206ENST00000482879 LLPHQ9BRT6 129 aaKnown RBP14.19□□□□□ -0.14
SDC1-206ENST00000482879 SLC26A6Q9BXS9 759 aa14.19□□□□□ -0.14
SDC1-206ENST00000482879 JMJD4Q9H9V9 463 aa14.19□□□□□ -0.14
SDC1-206ENST00000482879 CTDP1Q9Y5B0 961 aaPredicted RBP14.19□□□□□ -0.14
SDC1-206ENST00000482879 V9GY48 417 aaPredicted RBP14.19□□□□□ -0.14
SDC1-206ENST00000482879 MYPNQ86TC9 1320 aa14.18□□□□□ -0.14
SDC1-206ENST00000482879 CNTNAP5Q8WYK1 1306 aa14.18□□□□□ -0.14
SDC1-206ENST00000482879 hCG_1642624A0A1W2PR95 340 aa14.18□□□□□ -0.14
SDC1-206ENST00000482879 SPDYE16A6NNV3 312 aaPredicted RBP14.18□□□□□ -0.14
SDC1-206ENST00000482879 PRPF3O43395 683 aaKnown RBP14.18□□□□□ -0.14
SDC1-206ENST00000482879 ZBED4O75132 1171 aa14.18□□□□□ -0.14
SDC1-206ENST00000482879 FMNL1O95466 1100 aaPredicted RBP14.18□□□□□ -0.14
SDC1-206ENST00000482879 FDX1P10109 184 aa14.18□□□□□ -0.14
SDC1-206ENST00000482879 CYP2C8P10632 490 aa14.18□□□□□ -0.14
SDC1-206ENST00000482879 HOMER1Q86YM7 354 aa14.18□□□□□ -0.14
SDC1-206ENST00000482879 TRIM22Q8IYM9 498 aa14.18□□□□□ -0.14
SDC1-206ENST00000482879 RRP36Q96EU6 259 aaKnown RBP14.18□□□□□ -0.14
SDC1-206ENST00000482879 PIGSQ96S52 555 aa14.18□□□□□ -0.14
SDC1-206ENST00000482879 ZCCHC17Q9NP64 241 aaKnown RBP14.18□□□□□ -0.14
SDC1-206ENST00000482879 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.18□□□□□ -0.14
SDC1-206ENST00000482879 PTPDC1A2A3K4 754 aa14.17□□□□□ -0.14
SDC1-206ENST00000482879 VWA5AO00534 786 aa14.17□□□□□ -0.14
SDC1-206ENST00000482879 JAK2O60674 1132 aa14.17□□□□□ -0.14
SDC1-206ENST00000482879 HSP90AA1P07900 732 aaKnown RBP14.17□□□□□ -0.14
SDC1-206ENST00000482879 HERVK_113P62684 666 aa14.17□□□□□ -0.14
SDC1-206ENST00000482879 TAF1CQ15572 869 aaPredicted RBP14.17□□□□□ -0.14
SDC1-206ENST00000482879 CDC37Q16543 378 aaPredicted RBP14.17□□□□□ -0.14
SDC1-206ENST00000482879 CCDC174Q6PII3 467 aa14.17□□□□□ -0.14
SDC1-206ENST00000482879 SMCR8Q8TEV9 937 aaPredicted RBP14.17□□□□□ -0.14
SDC1-206ENST00000482879 MTMR8Q96EF0 704 aa14.17□□□□□ -0.14
SDC1-206ENST00000482879 DDX11Q96FC9 970 aa14.17□□□□□ -0.14
SDC1-206ENST00000482879 PARK7Q99497 189 aaKnown RBP14.17□□□□□ -0.14
SDC1-206ENST00000482879 RNF26Q9BY78 433 aaPredicted RBP14.17□□□□□ -0.14
SDC1-206ENST00000482879 RANBP17Q9H2T7 1088 aaKnown RBP14.17□□□□□ -0.14
SDC1-206ENST00000482879 FOXD4L1Q9NU39 408 aa14.17□□□□□ -0.14
SDC1-206ENST00000482879 ORC3Q9UBD5 711 aaPredicted RBP14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms