RNA–Protein interactions for RNA: ENST00000478349.6

SMARCE1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 5

Gene SMARCE1, Length 1,090 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-209ENST00000478349 NEDD1Q8NHV4 660 aa17.16■□□□□ 0.34
SMARCE1-209ENST00000478349 CEP95Q96GE4 821 aa17.16■□□□□ 0.34
SMARCE1-209ENST00000478349 XPNPEP3Q9NQH7 507 aa17.16■□□□□ 0.34
SMARCE1-209ENST00000478349 PGK2P07205 417 aa17.15■□□□□ 0.34
SMARCE1-209ENST00000478349 ATN1P54259 1190 aaPredicted RBP17.15■□□□□ 0.34
SMARCE1-209ENST00000478349 RTP1P59025 263 aa17.15■□□□□ 0.34
SMARCE1-209ENST00000478349 IKQ13123 557 aaPredicted RBP17.15■□□□□ 0.34
SMARCE1-209ENST00000478349 ZNF792Q3KQV3 632 aa17.15■□□□□ 0.34
SMARCE1-209ENST00000478349 ANKRD45Q5TZF3 282 aa17.15■□□□□ 0.34
SMARCE1-209ENST00000478349 REPS2Q8NFH8 660 aa17.15■□□□□ 0.34
SMARCE1-209ENST00000478349 KIFC2Q96AC6 838 aa17.15■□□□□ 0.34
SMARCE1-209ENST00000478349 NUP88Q99567 741 aaPredicted RBP17.15■□□□□ 0.34
SMARCE1-209ENST00000478349 ATP11BQ9Y2G3 1177 aa17.15■□□□□ 0.34
SMARCE1-209ENST00000478349 SYNGAP1Q96PV0 1343 aa17.15■□□□□ 0.34
SMARCE1-209ENST00000478349 TSPY2A6NKD2 308 aa17.14■□□□□ 0.33
SMARCE1-209ENST00000478349 BMP3P12645 472 aa17.14■□□□□ 0.33
SMARCE1-209ENST00000478349 STAT2P52630 851 aa17.14■□□□□ 0.33
SMARCE1-209ENST00000478349 HDAC1Q13547 482 aaPredicted RBP17.14■□□□□ 0.33
SMARCE1-209ENST00000478349 FAM160B2Q86V87 743 aa17.14■□□□□ 0.33
SMARCE1-209ENST00000478349 CHST13Q8NET6 341 aa17.14■□□□□ 0.33
SMARCE1-209ENST00000478349 CHURC1Q8WUH1 139 aa17.14■□□□□ 0.33
SMARCE1-209ENST00000478349 SLC1A4P43007 532 aa17.13■□□□□ 0.33
SMARCE1-209ENST00000478349 TFAP4Q01664 338 aa17.13■□□□□ 0.33
SMARCE1-209ENST00000478349 LRRC41Q15345 812 aa17.13■□□□□ 0.33
SMARCE1-209ENST00000478349 FAM47AQ5JRC9 791 aa17.13■□□□□ 0.33
SMARCE1-209ENST00000478349 C1orf53Q5VUE5 145 aa17.13■□□□□ 0.33
SMARCE1-209ENST00000478349 SLFN13Q68D06 897 aa17.13■□□□□ 0.33
SMARCE1-209ENST00000478349 ZNF467Q7Z7K2 595 aaPredicted RBP17.13■□□□□ 0.33
SMARCE1-209ENST00000478349 CPXCR1Q8N123 301 aa17.13■□□□□ 0.33
SMARCE1-209ENST00000478349 LRRC47Q8N1G4 583 aaKnown RBP17.13■□□□□ 0.33
SMARCE1-209ENST00000478349 ANKRD35Q8N283 1001 aa17.13■□□□□ 0.33
SMARCE1-209ENST00000478349 GMCL1Q96IK5 515 aa17.13■□□□□ 0.33
SMARCE1-209ENST00000478349 SLC38A10Q9HBR0 1119 aa17.13■□□□□ 0.33
SMARCE1-209ENST00000478349 HELLSQ9NRZ9 838 aa17.13■□□□□ 0.33
SMARCE1-209ENST00000478349 RANBP2P49792 3224 aaKnown RBP17.13■□□□□ 0.33
SMARCE1-209ENST00000478349 RLFQ13129 1914 aa17.12■□□□□ 0.33
SMARCE1-209ENST00000478349 SLC4A3P48751 1232 aa17.12■□□□□ 0.33
SMARCE1-209ENST00000478349 MDM2Q00987 491 aaPredicted RBP17.12■□□□□ 0.33
SMARCE1-209ENST00000478349 PRAMEF19Q5SWL8 479 aa17.12■□□□□ 0.33
SMARCE1-209ENST00000478349 ANO1Q5XXA6 986 aa17.12■□□□□ 0.33
SMARCE1-209ENST00000478349 SLC39A5Q6ZMH5 540 aa17.12■□□□□ 0.33
SMARCE1-209ENST00000478349 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.12■□□□□ 0.33
SMARCE1-209ENST00000478349 OTUD7AQ8TE49 926 aaPredicted RBP17.12■□□□□ 0.33
SMARCE1-209ENST00000478349 SEC62Q99442 399 aaKnown RBP17.12■□□□□ 0.33
SMARCE1-209ENST00000478349 SPC25Q9HBM1 224 aa17.12■□□□□ 0.33
SMARCE1-209ENST00000478349 FAM184BQ9ULE4 1060 aa17.12■□□□□ 0.33
SMARCE1-209ENST00000478349 STX8Q9UNK0 236 aa17.12■□□□□ 0.33
SMARCE1-209ENST00000478349 ALPK3Q96L96 1907 aa17.11■□□□□ 0.33
SMARCE1-209ENST00000478349 GREB1LQ9C091 1923 aaPredicted RBP17.11■□□□□ 0.33
SMARCE1-209ENST00000478349 SOX1O00570 391 aaPredicted RBP17.11■□□□□ 0.33
SMARCE1-209ENST00000478349 ADCYAP1R1P41586 468 aa17.11■□□□□ 0.33
SMARCE1-209ENST00000478349 MFAP1P55081 439 aaKnown RBP17.11■□□□□ 0.33
SMARCE1-209ENST00000478349 SNX17Q15036 470 aa17.11■□□□□ 0.33
SMARCE1-209ENST00000478349 TKFCQ3LXA3 575 aa17.11■□□□□ 0.33
SMARCE1-209ENST00000478349 NUP133Q8WUM0 1156 aa17.11■□□□□ 0.33
SMARCE1-209ENST00000478349 LRCH3Q96II8 777 aa17.11■□□□□ 0.33
SMARCE1-209ENST00000478349 CRBNQ96SW2 442 aa17.11■□□□□ 0.33
SMARCE1-209ENST00000478349 RAVER2Q9HCJ3 691 aaKnown RBP17.11■□□□□ 0.33
SMARCE1-209ENST00000478349 PRDM5Q9NQX1 630 aaPredicted RBP17.11■□□□□ 0.33
SMARCE1-209ENST00000478349 PHF24Q9UPV7 400 aa17.11■□□□□ 0.33
SMARCE1-209ENST00000478349 SALL3Q9BXA9 1300 aa17.11■□□□□ 0.33
SMARCE1-209ENST00000478349 TMEM232C9JQI7 657 aa17.1■□□□□ 0.33
SMARCE1-209ENST00000478349 PDE1AP54750 535 aa17.1■□□□□ 0.33
SMARCE1-209ENST00000478349 MAMDC4Q6UXC1 1216 aa17.1■□□□□ 0.33
SMARCE1-209ENST00000478349 TSEN34Q9BSV6 310 aaKnown RBP17.1■□□□□ 0.33
SMARCE1-209ENST00000478349 ACAD9Q9H845 621 aa17.1■□□□□ 0.33
SMARCE1-209ENST00000478349 ANAPC4Q9UJX5 808 aa17.1■□□□□ 0.33
SMARCE1-209ENST00000478349 ZHX1Q9UKY1 873 aaPredicted RBP17.1■□□□□ 0.33
SMARCE1-209ENST00000478349 FRMPD3Q5JV73 1810 aa17.1■□□□□ 0.33
SMARCE1-209ENST00000478349 DNAJC25-GNG10A0A024R161 153 aa17.09■□□□□ 0.33
SMARCE1-209ENST00000478349 RANBP6O60518 1105 aaKnown RBP17.09■□□□□ 0.33
SMARCE1-209ENST00000478349 PLA2G6O60733 806 aa17.09■□□□□ 0.33
SMARCE1-209ENST00000478349 TRIM60Q495X7 471 aa17.09■□□□□ 0.33
SMARCE1-209ENST00000478349 DEFB123Q8N688 67 aa17.09■□□□□ 0.33
SMARCE1-209ENST00000478349 STAG1Q8WVM7 1258 aa17.09■□□□□ 0.33
SMARCE1-209ENST00000478349 ABHD16BQ9H3Z7 469 aa17.09■□□□□ 0.33
SMARCE1-209ENST00000478349 RWDD1Q9H446 243 aaPredicted RBP17.09■□□□□ 0.33
SMARCE1-209ENST00000478349 TOMM22Q9NS69 142 aa17.09■□□□□ 0.33
SMARCE1-209ENST00000478349 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.09■□□□□ 0.33
SMARCE1-209ENST00000478349 ZMYM6O95789 1325 aa17.08■□□□□ 0.32
SMARCE1-209ENST00000478349 MOXD2PA6NHM9 499 aa17.08■□□□□ 0.32
SMARCE1-209ENST00000478349 ORC4O43929 436 aa17.08■□□□□ 0.32
SMARCE1-209ENST00000478349 ZNF865P0CJ78 1059 aaPredicted RBP17.08■□□□□ 0.32
SMARCE1-209ENST00000478349 PCP11498 1178 aaKnown RBP17.08■□□□□ 0.32
SMARCE1-209ENST00000478349 NT5C2P49902 561 aa17.08■□□□□ 0.32
SMARCE1-209ENST00000478349 ALX1Q15699 326 aa17.08■□□□□ 0.32
SMARCE1-209ENST00000478349 MCMDC2Q4G0Z9 681 aa17.08■□□□□ 0.32
SMARCE1-209ENST00000478349 FERMT2Q96AC1 680 aa17.08■□□□□ 0.32
SMARCE1-209ENST00000478349 HOMER2Q9NSB8 354 aa17.08■□□□□ 0.32
SMARCE1-209ENST00000478349 PNMA2Q9UL42 364 aa17.08■□□□□ 0.32
SMARCE1-209ENST00000478349 RIPK3Q9Y572 518 aa17.08■□□□□ 0.32
SMARCE1-209ENST00000478349 TACC3Q9Y6A5 838 aa17.08■□□□□ 0.32
SMARCE1-209ENST00000478349 PARP14Q460N5 1801 aa17.07■□□□□ 0.32
SMARCE1-209ENST00000478349 MROH7Q68CQ1 1323 aa17.07■□□□□ 0.32
SMARCE1-209ENST00000478349 TRIM6-TRIM34B2RNG4 842 aa17.07■□□□□ 0.32
SMARCE1-209ENST00000478349 POTEB2H3BUK9 544 aa17.07■□□□□ 0.32
SMARCE1-209ENST00000478349 DUSP11O75319 330 aaKnown RBP17.07■□□□□ 0.32
SMARCE1-209ENST00000478349 PGK1P00558 417 aa17.07■□□□□ 0.32
SMARCE1-209ENST00000478349 CCDC129Q6ZRS4 1044 aa17.07■□□□□ 0.32
SMARCE1-209ENST00000478349 PCSK9Q8NBP7 692 aaKnown RBP17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms