RNA–Protein interactions for RNA: ENST00000477547.6

SEC13-215, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 2

Gene SEC13, Length 1,313 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-215ENST00000477547 NOM1Q5C9Z4 860 aaKnown RBP17.87■□□□□ 0.45
SEC13-215ENST00000477547 GPATCH4Q5T3I0 446 aaKnown RBP17.87■□□□□ 0.45
SEC13-215ENST00000477547 OTUD7BQ6GQQ9 843 aa17.87■□□□□ 0.45
SEC13-215ENST00000477547 SAMD1Q6SPF0 538 aaPredicted RBP17.87■□□□□ 0.45
SEC13-215ENST00000477547 CCDC144CPQ8IYA2 1237 aa17.87■□□□□ 0.45
SEC13-215ENST00000477547 PARK7Q99497 189 aaKnown RBP17.87■□□□□ 0.45
SEC13-215ENST00000477547 LARP6Q9BRS8 491 aaKnown RBP17.87■□□□□ 0.45
SEC13-215ENST00000477547 ALDH8A1Q9H2A2 487 aaPredicted RBP17.87■□□□□ 0.45
SEC13-215ENST00000477547 ZCCHC17Q9NP64 241 aaKnown RBP17.87■□□□□ 0.45
SEC13-215ENST00000477547 GPCPD1Q9NPB8 672 aa17.87■□□□□ 0.45
SEC13-215ENST00000477547 MGAMO43451 1857 aa17.86■□□□□ 0.45
SEC13-215ENST00000477547 GOLGA8HP0CJ92 632 aa17.86■□□□□ 0.45
SEC13-215ENST00000477547 HOXA7P31268 230 aaPredicted RBP17.86■□□□□ 0.45
SEC13-215ENST00000477547 KIF5BP33176 963 aa17.86■□□□□ 0.45
SEC13-215ENST00000477547 STAT2P52630 851 aa17.86■□□□□ 0.45
SEC13-215ENST00000477547 RCAN1P53805 252 aa17.86■□□□□ 0.45
SEC13-215ENST00000477547 ASCC2Q9H1I8 757 aaPredicted RBP17.86■□□□□ 0.45
SEC13-215ENST00000477547 FBXO28Q9NVF7 368 aa17.86■□□□□ 0.45
SEC13-215ENST00000477547 TMEM232C9JQI7 657 aa17.85■□□□□ 0.45
SEC13-215ENST00000477547 OSBPP22059 807 aa17.85■□□□□ 0.45
SEC13-215ENST00000477547 METAP2P50579 478 aaKnown RBP eCLIP17.85■□□□□ 0.451e-7■■□□□ 13.9
SEC13-215ENST00000477547 EVCP57679 992 aa17.85■□□□□ 0.45
SEC13-215ENST00000477547 TAF1CQ15572 869 aaPredicted RBP17.85■□□□□ 0.45
SEC13-215ENST00000477547 RTN1Q16799 776 aa17.85■□□□□ 0.45
SEC13-215ENST00000477547 CATSPERGQ6ZRH7 1159 aa17.85■□□□□ 0.45
SEC13-215ENST00000477547 SMCR8Q8TEV9 937 aaPredicted RBP17.85■□□□□ 0.45
SEC13-215ENST00000477547 MAP3K14Q99558 947 aa17.85■□□□□ 0.45
SEC13-215ENST00000477547 SLF1Q9BQI6 1058 aa17.85■□□□□ 0.45
SEC13-215ENST00000477547 FEM1BQ9UK73 627 aa17.85■□□□□ 0.45
SEC13-215ENST00000477547 MYPNQ86TC9 1320 aa17.84■□□□□ 0.45
SEC13-215ENST00000477547 CENPFP49454 3210 aa17.84■□□□□ 0.45
SEC13-215ENST00000477547 PLXNB2O15031 1838 aa17.84■□□□□ 0.45
SEC13-215ENST00000477547 CYP2C8P10632 490 aa17.84■□□□□ 0.45
SEC13-215ENST00000477547 FXR1P51114 621 aaKnown RBP eCLIP17.84■□□□□ 0.45
SEC13-215ENST00000477547 TTBK2Q6IQ55 1244 aa17.84■□□□□ 0.45
SEC13-215ENST00000477547 FAM160B2Q86V87 743 aa17.84■□□□□ 0.45
SEC13-215ENST00000477547 STAG2Q8N3U4 1231 aa17.84■□□□□ 0.45
SEC13-215ENST00000477547 IL27Q8NEV9 243 aa17.84■□□□□ 0.45
SEC13-215ENST00000477547 MAD2L2Q9UI95 211 aa17.84■□□□□ 0.45
SEC13-215ENST00000477547 PPP1R9AQ9ULJ8 1098 aa17.84■□□□□ 0.45
SEC13-215ENST00000477547 TPCN1Q9ULQ1 816 aa17.84■□□□□ 0.45
SEC13-215ENST00000477547 ZSWIM8A7E2V4 1837 aa17.84■□□□□ 0.45
SEC13-215ENST00000477547 PALM3A6NDB9 673 aaPredicted RBP17.83■□□□□ 0.44
SEC13-215ENST00000477547 SPDYE16A6NNV3 312 aaPredicted RBP17.83■□□□□ 0.44
SEC13-215ENST00000477547 LARGE1O95461 756 aa17.83■□□□□ 0.44
SEC13-215ENST00000477547 ALDH1A1P00352 501 aa17.83■□□□□ 0.44
SEC13-215ENST00000477547 SLC16A2P36021 539 aa17.83■□□□□ 0.44
SEC13-215ENST00000477547 HERVK_113P62684 666 aa17.83■□□□□ 0.44
SEC13-215ENST00000477547 STK3Q13188 491 aa17.83■□□□□ 0.44
SEC13-215ENST00000477547 SYDE2Q5VT97 1194 aa17.83■□□□□ 0.44
SEC13-215ENST00000477547 KIFC2Q96AC6 838 aa17.83■□□□□ 0.44
SEC13-215ENST00000477547 ATG4CQ96DT6 458 aa17.83■□□□□ 0.44
SEC13-215ENST00000477547 CPVLQ9H3G5 476 aa17.83■□□□□ 0.44
SEC13-215ENST00000477547 RBM28Q9NW13 759 aaKnown RBP17.83■□□□□ 0.44
SEC13-215ENST00000477547 TRIM17Q9Y577 477 aa17.83■□□□□ 0.44
SEC13-215ENST00000477547 SMCHD1A6NHR9 2005 aa17.82■□□□□ 0.44
SEC13-215ENST00000477547 KLRF2D3W0D1 207 aa17.82■□□□□ 0.44
SEC13-215ENST00000477547 DHX16O60231 1041 aaKnown RBP17.82■□□□□ 0.44
SEC13-215ENST00000477547 PLEKHA8P1O95397 391 aa17.82■□□□□ 0.44
SEC13-215ENST00000477547 CD2BP2O95400 341 aaKnown RBP17.82■□□□□ 0.44
SEC13-215ENST00000477547 PDIA3P30101 505 aaKnown RBP17.82■□□□□ 0.44
SEC13-215ENST00000477547 COG2Q14746 738 aa17.82■□□□□ 0.44
SEC13-215ENST00000477547 TMTC3Q6ZXV5 915 aa17.82■□□□□ 0.44
SEC13-215ENST00000477547 FANCBQ8NB91 859 aa17.82■□□□□ 0.44
SEC13-215ENST00000477547 CHURC1Q8WUH1 139 aa17.82■□□□□ 0.44
SEC13-215ENST00000477547 ZNF274Q96GC6 653 aaPredicted RBP17.82■□□□□ 0.44
SEC13-215ENST00000477547 CFHR5Q9BXR6 569 aa17.82■□□□□ 0.44
SEC13-215ENST00000477547 ADGRA2Q96PE1 1338 aa17.82■□□□□ 0.44
SEC13-215ENST00000477547 PLA2G6O60733 806 aa17.81■□□□□ 0.44
SEC13-215ENST00000477547 DSG3P32926 999 aa17.81■□□□□ 0.44
SEC13-215ENST00000477547 GNAQP50148 359 aa17.81■□□□□ 0.44
SEC13-215ENST00000477547 CCT2P78371 535 aaKnown RBP17.81■□□□□ 0.44
SEC13-215ENST00000477547 CRHR2Q13324 411 aa17.81■□□□□ 0.44
SEC13-215ENST00000477547 BTNL9Q6UXG8 535 aa17.81■□□□□ 0.44
SEC13-215ENST00000477547 OTOP1Q7RTM1 612 aa17.81■□□□□ 0.44
SEC13-215ENST00000477547 GTF3C2Q8WUA4 911 aaPredicted RBP17.81■□□□□ 0.44
SEC13-215ENST00000477547 UBA5Q9GZZ9 404 aa17.81■□□□□ 0.44
SEC13-215ENST00000477547 SLKQ9H2G2 1235 aaPredicted RBP17.81■□□□□ 0.44
SEC13-215ENST00000477547 NCOA5Q9HCD5 579 aaKnown RBP17.81■□□□□ 0.44
SEC13-215ENST00000477547 PRR12Q9ULL5 1215 aa17.81■□□□□ 0.44
SEC13-215ENST00000477547 LIMCH1Q9UPQ0 1083 aa17.81■□□□□ 0.44
SEC13-215ENST00000477547 CNTNAP5Q8WYK1 1306 aa17.81■□□□□ 0.44
SEC13-215ENST00000477547 CCDC196A0A1B0GTZ2 297 aa17.8■□□□□ 0.44
SEC13-215ENST00000477547 CDC27P30260 824 aa17.8■□□□□ 0.44
SEC13-215ENST00000477547 ME3Q16798 604 aa17.8■□□□□ 0.44
SEC13-215ENST00000477547 PRPF38AQ8NAV1 312 aaKnown RBP17.8■□□□□ 0.44
SEC13-215ENST00000477547 P2RX7Q99572 595 aaKnown RBP17.8■□□□□ 0.44
SEC13-215ENST00000477547 PAGR1Q9BTK6 254 aa17.8■□□□□ 0.44
SEC13-215ENST00000477547 ZFYVE28Q9HCC9 887 aa17.8■□□□□ 0.44
SEC13-215ENST00000477547 PFKFB2O60825 505 aa17.79■□□□□ 0.44
SEC13-215ENST00000477547 EN2P19622 333 aaPredicted RBP17.79■□□□□ 0.44
SEC13-215ENST00000477547 MCM2P49736 904 aa17.79■□□□□ 0.44
SEC13-215ENST00000477547 LBX2Q6XYB7 198 aa17.79■□□□□ 0.44
SEC13-215ENST00000477547 GTF3C6Q969F1 213 aa17.79■□□□□ 0.44
SEC13-215ENST00000477547 LZTS2Q9BRK4 669 aa17.79■□□□□ 0.44
SEC13-215ENST00000477547 SPZ1Q9BXG8 430 aa17.79■□□□□ 0.44
SEC13-215ENST00000477547 HOXC10Q9NYD6 342 aa17.79■□□□□ 0.44
SEC13-215ENST00000477547 CTDP1Q9Y5B0 961 aaPredicted RBP17.79■□□□□ 0.44
SEC13-215ENST00000477547 BRCA2P51587 3418 aa17.79■□□□□ 0.44
SEC13-215ENST00000477547 KIAA0100Q14667 2235 aaKnown RBP17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms