RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 MMP19Q99542 508 aa22.07■■□□□ 1.12
COL7A1-209ENST00000474432 ATP2A1O14983 1001 aa22.06■■□□□ 1.12
COL7A1-209ENST00000474432 NMT2O60551 498 aa22.06■■□□□ 1.12
COL7A1-209ENST00000474432 FGAP02671 866 aa22.06■■□□□ 1.12
COL7A1-209ENST00000474432 CNGA1P29973 690 aa22.06■■□□□ 1.12
COL7A1-209ENST00000474432 SLFN13Q68D06 897 aa22.06■■□□□ 1.12
COL7A1-209ENST00000474432 SUPT16HQ9Y5B9 1047 aaKnown RBP22.06■■□□□ 1.12
COL7A1-209ENST00000474432 HSPD1P10809 573 aaKnown RBP22.05■■□□□ 1.12
COL7A1-209ENST00000474432 C7orf61Q8IZ16 206 aa22.05■■□□□ 1.12
COL7A1-209ENST00000474432 TEX13BQ9BXU2 312 aa22.05■■□□□ 1.12
COL7A1-209ENST00000474432 SLC38A10Q9HBR0 1119 aa22.05■■□□□ 1.12
COL7A1-209ENST00000474432 ORC4O43929 436 aa22.04■■□□□ 1.12
COL7A1-209ENST00000474432 MSCO60682 206 aa22.04■■□□□ 1.12
COL7A1-209ENST00000474432 LRRC26Q2I0M4 334 aa22.04■■□□□ 1.12
COL7A1-209ENST00000474432 SNRNP48Q6IEG0 339 aaKnown RBP22.04■■□□□ 1.12
COL7A1-209ENST00000474432 KIFC2Q96AC6 838 aa22.04■■□□□ 1.12
COL7A1-209ENST00000474432 SLC5A4Q9NY91 659 aa22.04■■□□□ 1.12
COL7A1-209ENST00000474432 FEM1BQ9UK73 627 aa22.04■■□□□ 1.12
COL7A1-209ENST00000474432 DIS3Q9Y2L1 958 aaKnown RBP22.04■■□□□ 1.12
COL7A1-209ENST00000474432 DNAJC25-GNG10A0A024R161 153 aa22.03■■□□□ 1.12
COL7A1-209ENST00000474432 TRIM6-TRIM34B2RNG4 842 aa22.03■■□□□ 1.12
COL7A1-209ENST00000474432 SEPT4O43236 478 aa22.03■■□□□ 1.12
COL7A1-209ENST00000474432 BMP3P12645 472 aa22.03■■□□□ 1.12
COL7A1-209ENST00000474432 SDSP20132 328 aa22.03■■□□□ 1.12
COL7A1-209ENST00000474432 COPB2P35606 906 aa22.03■■□□□ 1.12
COL7A1-209ENST00000474432 KCTD2Q14681 263 aa22.03■■□□□ 1.12
COL7A1-209ENST00000474432 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.03■■□□□ 1.12
COL7A1-209ENST00000474432 RASGRP2Q7LDG7 609 aa22.03■■□□□ 1.12
COL7A1-209ENST00000474432 RILPL2Q969X0 211 aa22.03■■□□□ 1.12
COL7A1-209ENST00000474432 GMCL1Q96IK5 515 aa22.03■■□□□ 1.12
COL7A1-209ENST00000474432 RAVER2Q9HCJ3 691 aaKnown RBP22.03■■□□□ 1.12
COL7A1-209ENST00000474432 PCDH10Q9P2E7 1040 aa22.03■■□□□ 1.12
COL7A1-209ENST00000474432 ZMYND8Q9ULU4 1186 aaPredicted RBP22.03■■□□□ 1.12
COL7A1-209ENST00000474432 ZMYM6O95789 1325 aa22.03■■□□□ 1.12
COL7A1-209ENST00000474432 TSPY2A6NKD2 308 aa22.02■■□□□ 1.12
COL7A1-209ENST00000474432 ANO1Q5XXA6 986 aa22.02■■□□□ 1.12
COL7A1-209ENST00000474432 CPXCR1Q8N123 301 aa22.02■■□□□ 1.12
COL7A1-209ENST00000474432 GDF15Q99988 308 aa22.02■■□□□ 1.12
COL7A1-209ENST00000474432 TINF2Q9BSI4 451 aa22.02■■□□□ 1.12
COL7A1-209ENST00000474432 CCDC171Q6TFL3 1326 aa22.02■■□□□ 1.12
COL7A1-209ENST00000474432 ZBED4O75132 1171 aa22.01■■□□□ 1.11
COL7A1-209ENST00000474432 TAL1P17542 331 aaPredicted RBP22.01■■□□□ 1.11
COL7A1-209ENST00000474432 ZNF536O15090 1300 aa22.01■■□□□ 1.11
COL7A1-209ENST00000474432 SZT2Q5T011 3432 aa22■■□□□ 1.11
COL7A1-209ENST00000474432 TMEM232C9JQI7 657 aa22■■□□□ 1.11
COL7A1-209ENST00000474432 DNM1LO00429 736 aa22■■□□□ 1.11
COL7A1-209ENST00000474432 RANBP6O60518 1105 aaKnown RBP22■■□□□ 1.11
COL7A1-209ENST00000474432 SYN1P17600 705 aa22■■□□□ 1.11
COL7A1-209ENST00000474432 MCCP23508 829 aa22■■□□□ 1.11
COL7A1-209ENST00000474432 GJC2Q5T442 439 aaPredicted RBP22■■□□□ 1.11
COL7A1-209ENST00000474432 CHMP4CQ96CF2 233 aa22■■□□□ 1.11
COL7A1-209ENST00000474432 FGD4Q96M96 766 aa22■■□□□ 1.11
COL7A1-209ENST00000474432 SENP6Q9GZR1 1112 aaPredicted RBP22■■□□□ 1.11
COL7A1-209ENST00000474432 STX8Q9UNK0 236 aa22■■□□□ 1.11
COL7A1-209ENST00000474432 PLA2G6O60733 806 aa21.99■■□□□ 1.11
COL7A1-209ENST00000474432 ZNF865P0CJ78 1059 aaPredicted RBP21.99■■□□□ 1.11
COL7A1-209ENST00000474432 OAZ1P54368 228 aa21.99■■□□□ 1.11
COL7A1-209ENST00000474432 STAG1Q8WVM7 1258 aa21.99■■□□□ 1.11
COL7A1-209ENST00000474432 NRBP1Q9UHY1 535 aa21.99■■□□□ 1.11
COL7A1-209ENST00000474432 MCM3APO60318 1980 aa21.99■■□□□ 1.11
COL7A1-209ENST00000474432 DNAH12Q6ZR08 3092 aa21.99■■□□□ 1.11
COL7A1-209ENST00000474432 PDE4AP27815 886 aa21.98■■□□□ 1.11
COL7A1-209ENST00000474432 SLC1A4P43007 532 aa21.98■■□□□ 1.11
COL7A1-209ENST00000474432 STAT2P52630 851 aa21.98■■□□□ 1.11
COL7A1-209ENST00000474432 HAND2P61296 217 aa21.98■■□□□ 1.11
COL7A1-209ENST00000474432 RCSD1Q6JBY9 416 aa21.98■■□□□ 1.11
COL7A1-209ENST00000474432 KCTD1Q719H9 257 aa21.98■■□□□ 1.11
COL7A1-209ENST00000474432 TBC1D10CQ8IV04 446 aa21.98■■□□□ 1.11
COL7A1-209ENST00000474432 LAMA4Q16363 1823 aa21.97■■□□□ 1.11
COL7A1-209ENST00000474432 SNAI1O95863 264 aaPredicted RBP21.97■■□□□ 1.11
COL7A1-209ENST00000474432 BMP8BP34820 402 aa21.97■■□□□ 1.11
COL7A1-209ENST00000474432 SLC4A3P48751 1232 aa21.97■■□□□ 1.11
COL7A1-209ENST00000474432 PPP4R3BQ5MIZ7 849 aa21.97■■□□□ 1.11
COL7A1-209ENST00000474432 MAMDC4Q6UXC1 1216 aa21.97■■□□□ 1.11
COL7A1-209ENST00000474432 FAM160B2Q86V87 743 aa21.97■■□□□ 1.11
COL7A1-209ENST00000474432 ARRDC4Q8NCT1 418 aa21.97■■□□□ 1.11
COL7A1-209ENST00000474432 TCP11L1Q9NUJ3 509 aa21.97■■□□□ 1.11
COL7A1-209ENST00000474432 A0A1W2PPC1 479 aa21.96■■□□□ 1.11
COL7A1-209ENST00000474432 FDX1P10109 184 aa21.96■■□□□ 1.11
COL7A1-209ENST00000474432 LRRC41Q15345 812 aa21.96■■□□□ 1.11
COL7A1-209ENST00000474432 CHST13Q8NET6 341 aa21.96■■□□□ 1.11
COL7A1-209ENST00000474432 CHURC1Q8WUH1 139 aa21.96■■□□□ 1.11
COL7A1-209ENST00000474432 DDX11Q96FC9 970 aa21.96■■□□□ 1.11
COL7A1-209ENST00000474432 AGBL1Q96MI9 1066 aa21.96■■□□□ 1.11
COL7A1-209ENST00000474432 TMEM47Q9BQJ4 181 aa21.96■■□□□ 1.11
COL7A1-209ENST00000474432 PRR12Q9ULL5 1215 aa21.96■■□□□ 1.11
COL7A1-209ENST00000474432 LAMA3Q16787 3333 aa21.96■■□□□ 1.11
COL7A1-209ENST00000474432 MAGEA10P43363 369 aaPredicted RBP21.95■■□□□ 1.1
COL7A1-209ENST00000474432 ATN1P54259 1190 aaPredicted RBP21.95■■□□□ 1.1
COL7A1-209ENST00000474432 SNAP25P60880 206 aa21.95■■□□□ 1.1
COL7A1-209ENST00000474432 RRP12Q5JTH9 1297 aaKnown RBP21.95■■□□□ 1.1
COL7A1-209ENST00000474432 AKNAD1Q5T1N1 836 aa21.95■■□□□ 1.1
COL7A1-209ENST00000474432 ZNF467Q7Z7K2 595 aaPredicted RBP21.95■■□□□ 1.1
COL7A1-209ENST00000474432 MSL3Q8N5Y2 521 aaKnown RBP21.95■■□□□ 1.1
COL7A1-209ENST00000474432 IL25Q9H293 177 aa21.95■■□□□ 1.1
COL7A1-209ENST00000474432 TTBK2Q6IQ55 1244 aa21.94■■□□□ 1.1
COL7A1-209ENST00000474432 CWC27Q6UX04 472 aaKnown RBP21.94■■□□□ 1.1
COL7A1-209ENST00000474432 LENG1Q96BZ8 264 aaPredicted RBP21.94■■□□□ 1.1
COL7A1-209ENST00000474432 FBXO40Q9UH90 709 aa21.94■■□□□ 1.1
COL7A1-209ENST00000474432 CTDP1Q9Y5B0 961 aaPredicted RBP21.94■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms