RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 APBA2Q99767 749 aa16.72■□□□□ 0.27
VAMP4-203ENST00000474047 ESYT1Q9BSJ8 1104 aa16.72■□□□□ 0.27
VAMP4-203ENST00000474047 SLC5A4Q9NY91 659 aa16.72■□□□□ 0.27
VAMP4-203ENST00000474047 ZSWIM5Q9P217 1185 aa16.72■□□□□ 0.27
VAMP4-203ENST00000474047 FDX1P10109 184 aa16.71■□□□□ 0.27
VAMP4-203ENST00000474047 FCER1AP12319 257 aa16.71■□□□□ 0.27
VAMP4-203ENST00000474047 RALYLQ86SE5 291 aaKnown RBP16.71■□□□□ 0.27
VAMP4-203ENST00000474047 RIOX2Q8IUF8 465 aa16.71■□□□□ 0.27
VAMP4-203ENST00000474047 NKX2-3Q8TAU0 364 aa16.71■□□□□ 0.27
VAMP4-203ENST00000474047 PARP14Q460N5 1801 aa16.7■□□□□ 0.26
VAMP4-203ENST00000474047 CDC45O75419 566 aa16.7■□□□□ 0.26
VAMP4-203ENST00000474047 EN2P19622 333 aaPredicted RBP16.7■□□□□ 0.26
VAMP4-203ENST00000474047 NOVP48745 357 aa16.7■□□□□ 0.26
VAMP4-203ENST00000474047 GRB14Q14449 540 aa16.7■□□□□ 0.26
VAMP4-203ENST00000474047 SNRNP48Q6IEG0 339 aaKnown RBP16.7■□□□□ 0.26
VAMP4-203ENST00000474047 DGKHQ86XP1 1220 aa16.7■□□□□ 0.26
VAMP4-203ENST00000474047 MAP4K1Q92918 833 aa16.7■□□□□ 0.26
VAMP4-203ENST00000474047 ZSCAN10Q96SZ4 725 aaPredicted RBP16.7■□□□□ 0.26
VAMP4-203ENST00000474047 TEX13BQ9BXU2 312 aa16.7■□□□□ 0.26
VAMP4-203ENST00000474047 UNC93B1Q9H1C4 597 aa16.7■□□□□ 0.26
VAMP4-203ENST00000474047 KAT14Q9H8E8 782 aa16.7■□□□□ 0.26
VAMP4-203ENST00000474047 ANO2Q9NQ90 1003 aa16.7■□□□□ 0.26
VAMP4-203ENST00000474047 RBM8AQ9Y5S9 174 aaKnown RBP16.7■□□□□ 0.26
VAMP4-203ENST00000474047 COL11A1P12107 1806 aaPredicted RBP16.7■□□□□ 0.26
VAMP4-203ENST00000474047 CYP21A2P08686 494 aa16.7■□□□□ 0.26
VAMP4-203ENST00000474047 ADORA2AP29274 412 aa16.7■□□□□ 0.26
VAMP4-203ENST00000474047 KCTD2Q14681 263 aa16.7■□□□□ 0.26
VAMP4-203ENST00000474047 TRIB2Q92519 343 aa16.7■□□□□ 0.26
VAMP4-203ENST00000474047 USP6NLQ92738 828 aa16.7■□□□□ 0.26
VAMP4-203ENST00000474047 MMP19Q99542 508 aa16.7■□□□□ 0.26
VAMP4-203ENST00000474047 RAVER2Q9HCJ3 691 aaKnown RBP16.7■□□□□ 0.26
VAMP4-203ENST00000474047 GPCPD1Q9NPB8 672 aa16.7■□□□□ 0.26
VAMP4-203ENST00000474047 ZNF214Q9UL59 606 aaPredicted RBP16.7■□□□□ 0.26
VAMP4-203ENST00000474047 KIAA0100Q14667 2235 aaKnown RBP16.69■□□□□ 0.26
VAMP4-203ENST00000474047 A0A0G2JMZ2 1700 aa16.69■□□□□ 0.26
VAMP4-203ENST00000474047 MFSD14CQ5VZR4 134 aa16.69■□□□□ 0.26
VAMP4-203ENST00000474047 SLC38A10Q9HBR0 1119 aa16.69■□□□□ 0.26
VAMP4-203ENST00000474047 HMX1Q9NP08 348 aaPredicted RBP16.69■□□□□ 0.26
VAMP4-203ENST00000474047 FRMPD2Q68DX3 1309 aaPredicted RBP16.69■□□□□ 0.26
VAMP4-203ENST00000474047 PLXNB2O15031 1838 aa16.68■□□□□ 0.26
VAMP4-203ENST00000474047 ERICH2A1L162 156 aa16.68■□□□□ 0.26
VAMP4-203ENST00000474047 PLA2G6O60733 806 aa16.68■□□□□ 0.26
VAMP4-203ENST00000474047 GJB1P08034 283 aa16.68■□□□□ 0.26
VAMP4-203ENST00000474047 CCL14Q16627 93 aa16.68■□□□□ 0.26
VAMP4-203ENST00000474047 ABRAQ8N0Z2 381 aa16.68■□□□□ 0.26
VAMP4-203ENST00000474047 REPS2Q8NFH8 660 aa16.68■□□□□ 0.26
VAMP4-203ENST00000474047 NCOA7Q8NI08 942 aa16.68■□□□□ 0.26
VAMP4-203ENST00000474047 TNKSO95271 1327 aa16.68■□□□□ 0.26
VAMP4-203ENST00000474047 E7EWF7 191 aa16.67■□□□□ 0.26
VAMP4-203ENST00000474047 PRKAR2AP13861 404 aaKnown RBP16.67■□□□□ 0.26
VAMP4-203ENST00000474047 OAZ1P54368 228 aa16.67■□□□□ 0.26
VAMP4-203ENST00000474047 TRIM32Q13049 653 aa16.67■□□□□ 0.26
VAMP4-203ENST00000474047 PNMA1Q8ND90 353 aa16.67■□□□□ 0.26
VAMP4-203ENST00000474047 RPTORQ8N122 1335 aa16.67■□□□□ 0.26
VAMP4-203ENST00000474047 ATP2A1O14983 1001 aa16.67■□□□□ 0.26
VAMP4-203ENST00000474047 TFRCP02786 760 aaKnown RBP16.67■□□□□ 0.26
VAMP4-203ENST00000474047 HOXC6P09630 235 aa16.67■□□□□ 0.26
VAMP4-203ENST00000474047 SLC16A2P36021 539 aa16.67■□□□□ 0.26
VAMP4-203ENST00000474047 SART3Q15020 963 aaKnown RBP16.67■□□□□ 0.26
VAMP4-203ENST00000474047 IFIT1BQ5T764 474 aaKnown RBP16.67■□□□□ 0.26
VAMP4-203ENST00000474047 CCDC174Q6PII3 467 aa16.67■□□□□ 0.26
VAMP4-203ENST00000474047 RASGRP2Q7LDG7 609 aa16.67■□□□□ 0.26
VAMP4-203ENST00000474047 ENAHQ8N8S7 591 aaPredicted RBP16.67■□□□□ 0.26
VAMP4-203ENST00000474047 DDX11Q96FC9 970 aa16.67■□□□□ 0.26
VAMP4-203ENST00000474047 DEFB118Q96PH6 123 aa16.67■□□□□ 0.26
VAMP4-203ENST00000474047 LSG1Q9H089 658 aaKnown RBP16.67■□□□□ 0.26
VAMP4-203ENST00000474047 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.67■□□□□ 0.26
VAMP4-203ENST00000474047 PRR12Q9ULL5 1215 aa16.67■□□□□ 0.26
VAMP4-203ENST00000474047 PDHBP11177 359 aa16.66■□□□□ 0.26
VAMP4-203ENST00000474047 GJA8P48165 433 aa16.66■□□□□ 0.26
VAMP4-203ENST00000474047 SYDE2Q5VT97 1194 aa16.66■□□□□ 0.26
VAMP4-203ENST00000474047 TTBK2Q6IQ55 1244 aa16.66■□□□□ 0.26
VAMP4-203ENST00000474047 NPLOC4Q8TAT6 608 aa16.66■□□□□ 0.26
VAMP4-203ENST00000474047 U2AF1L4Q8WU68 220 aaKnown RBP16.66■□□□□ 0.26
VAMP4-203ENST00000474047 HOMER2Q9NSB8 354 aa16.66■□□□□ 0.26
VAMP4-203ENST00000474047 FBXO40Q9UH90 709 aa16.66■□□□□ 0.26
VAMP4-203ENST00000474047 IFIT3O14879 490 aaKnown RBP16.65■□□□□ 0.26
VAMP4-203ENST00000474047 SGPL1O95470 568 aa16.65■□□□□ 0.26
VAMP4-203ENST00000474047 SNAP25P60880 206 aa16.65■□□□□ 0.26
VAMP4-203ENST00000474047 CACNB2Q08289 660 aaPredicted RBP16.65■□□□□ 0.26
VAMP4-203ENST00000474047 GPATCH4Q5T3I0 446 aaKnown RBP16.65■□□□□ 0.26
VAMP4-203ENST00000474047 RNF20Q5VTR2 975 aa16.65■□□□□ 0.26
VAMP4-203ENST00000474047 CYB5R4Q7L1T6 521 aa16.65■□□□□ 0.26
VAMP4-203ENST00000474047 ANKS1AQ92625 1134 aa16.65■□□□□ 0.26
VAMP4-203ENST00000474047 RIPK3Q9Y572 518 aa16.65■□□□□ 0.26
VAMP4-203ENST00000474047 RBBP6Q7Z6E9 1792 aaKnown RBP16.65■□□□□ 0.26
VAMP4-203ENST00000474047 COBLO75128 1261 aa16.65■□□□□ 0.26
VAMP4-203ENST00000474047 PGK2P07205 417 aa16.65■□□□□ 0.26
VAMP4-203ENST00000474047 ALAS1P13196 640 aa16.65■□□□□ 0.26
VAMP4-203ENST00000474047 CNGA1P29973 690 aa16.65■□□□□ 0.26
VAMP4-203ENST00000474047 ZNF543Q08ER8 600 aa16.65■□□□□ 0.26
VAMP4-203ENST00000474047 ANKRD35Q8N283 1001 aa16.65■□□□□ 0.26
VAMP4-203ENST00000474047 CHST13Q8NET6 341 aa16.65■□□□□ 0.26
VAMP4-203ENST00000474047 FLRT1Q9NZU1 646 aa16.65■□□□□ 0.26
VAMP4-203ENST00000474047 HTTP42858 3142 aa16.64■□□□□ 0.25
VAMP4-203ENST00000474047 GOLGA8HP0CJ92 632 aa16.64■□□□□ 0.25
VAMP4-203ENST00000474047 CYP2C19P33261 490 aa16.64■□□□□ 0.25
VAMP4-203ENST00000474047 OLFML2BQ68BL8 750 aa16.64■□□□□ 0.25
VAMP4-203ENST00000474047 BTNL9Q6UXG8 535 aa16.64■□□□□ 0.25
VAMP4-203ENST00000474047 AGBL1Q96MI9 1066 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms